pycom09g03960

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0001253
Physical Location & Seq
Forward (+)
2955048 .. 2957068
2021 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g03960.5

Sequence Viewer

Length: 1146 bp
ATGGAAGATGTAGCTAGTGCTGGAATTGCAGACGGGGAGCCACAACCGGCCCCACCCTCTCCAACCATACCACCTAAATTGAAGCCAGAAGTAGTGACTCCAAAATATTCTATCATGAGTAGGCGTGGAACTGGAACTACTGGGAAAGAGATAAATTTGCTCGCAAATCACTTCAAAGTTTCTGTGAATGTTCCAGATGCTGTATTTTACCAGTATTCTGTTTCTATTACTTCTGAAGATAAGAAAGTTGTTGAAGGCAAGGGAATCGGGAGAAAACTTATTGACAGGCTTTATCAAACATACTCTTCAGAACTTGGTTGTAAAATGTTTGCATACGATGGGGAGAAAGCACTGTACACAGTGGGTCCTCTGCCACAGAACAAGCTTGAGTTCACAGTTGTTCTGGAGGAGACGTTTGCAAAGCATGAAAATGGAAGCACCAATGGGACCGAAAAACGGTCAAGACATTCTTTTCGGTCAAGAACTTTCAGCTTAGAGATAAGTTATGCTGCCAAAATACCTCTGAAACCAATTTCTCTTGCCCTCAAGGGAGCCGATGTAGAAAATACGCAAGATTCACTGAGAGTGCTTGATATTATTCTGCGGCAGCAAGCAGCTAACAGGGGTTGCCTTCTAGTTCGACAGTCATTCTTCCATGATGACTCTAGAAACTTTACTGATGTTGGAGGAGGTGTAAAAGGTGTTCGGGGATTTCATTCTAGTTTTCGTCCAACTCAGGGTGGCTTATCCTTGAATATGGATGTATCTACAACAATGATCTTAACACCTGGACCTGTGATTGATTTTCTGTTAGCTAACCAGGATGTAAGAGAACCTCGCTACATAGACTGGGTAAAGGCCAAGAGAATGCTGAAAAATATGAGGATTAATGCAAGACACCGTAACATGGAATTCAAAATAATAGGCTTAAGTGAGAAGCCATGTAATCAGCAATGTTTTCCTATGAAGTTAAAATGTGGTGACAATGGCACGAGTGAGGAGCAGACTGTGGAGATTACTGTTTATGAGTATTTCACTAAACACTGTGGTGTAGAAATCACCTCTTCTCAGTACATGCCATGCCTTGATGTTGGCAAGCCCAAAAGGCCTAACTATCTGCCTCTGGAGGAAAAAATACCAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

382

Amino Acids

42.58

Weight (kDa)

8.97

Isoelectric Point (pI)

40.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 604
AcsI RAATTY 2 cut(s) 154, 911
AcuI CTGAAG 2 cut(s) 255, 291
AfaI GTAC 2 cut(s) 356, 1073
AfiI CCNNNNNNNGG 3 cut(s) 456, 737, 907
AflII CTTAAG 1 cut(s) 928
AgsI TTSAA 5 cut(s) 82, 175, 254, 754, 916
AjnI CCWGG 2 cut(s) 787, 819
AleI CACNNNNGTG 1 cut(s) 1047
AluBI AGCT 5 cut(s) 14, 385, 492, 617, 815
AluI AGCT 5 cut(s) 14, 385, 492, 617, 815
Alw26I GTCTC 1 cut(s) 404
AlwNI CAGNNNCTG 1 cut(s) 200
AoxI GGCC 3 cut(s) 48, 858, 1106
ApeKI GCWGC 3 cut(s) 509, 607, 614
ApoI RAATTY 2 cut(s) 154, 911
ArsI GACNNNNNNTTYG 2 cut(s) 456, 488
AseI ATTAAT 1 cut(s) 888
AspS9I GGNCC 4 cut(s) 49, 365, 447, 791
AsuHPI GGTGA 2 cut(s) 992, 1051
AvaII GGWCC 3 cut(s) 365, 447, 791
BauI CACGAG 1 cut(s) 991
BbvI GCAGC 3 cut(s) 496, 619, 626
BccI CCATC 1 cut(s) 332
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BciT130I CCWGG 2 cut(s) 789, 821
BcoDI GTCTC 1 cut(s) 404
BfaI CTAG 4 cut(s) 15, 635, 666, 720
BfrI CTTAAG 1 cut(s) 928
BglI GCCNNNNNGGC 1 cut(s) 1105
BisI GCNGC 4 cut(s) 510, 605, 608, 615
BlsI GCNGC 4 cut(s) 511, 606, 609, 616
Bme1390I CCNGG 2 cut(s) 789, 821
Bme18I GGWCC 3 cut(s) 365, 447, 791
BmgT120I GGNCC 4 cut(s) 49, 365, 447, 791
BmiI GGNNCC 5 cut(s) 39, 51, 366, 448, 553
BmrFI CCNGG 2 cut(s) 789, 821
BmrI ACTGGG 2 cut(s) 150, 859
BmsI GCATC 1 cut(s) 187
BmuI ACTGGG 2 cut(s) 150, 859
BpmI CTGGAG 2 cut(s) 425, 1145
BpuEI CTTGAG 2 cut(s) 407, 530
BsaXI ACNNNNNCTCC 6 cut(s) 398, 428, 543, 573, 678, 708
Bsc4I CCNNNNNNNGG 3 cut(s) 456, 737, 907
Bse118I RCCGGY 1 cut(s) 46
Bse1I ACTGG 5 cut(s) 136, 145, 211, 854, 1139
Bse3DI GCAATG 1 cut(s) 959
BseBI CCWGG 2 cut(s) 789, 821
BseGI GGATG 2 cut(s) 766, 829
BseLI CCNNNNNNNGG 3 cut(s) 456, 737, 907
BseMI GCAATG 1 cut(s) 959
BseMII CTCAG 3 cut(s) 572, 749, 1082
BseNI ACTGG 5 cut(s) 136, 145, 211, 854, 1139
BseRI GAGGAG 3 cut(s) 422, 702, 1013
BseXI GCAGC 3 cut(s) 496, 619, 626
BshFI GGCC 3 cut(s) 50, 860, 1108
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 1 cut(s) 460
BslI CCNNNNNNNGG 3 cut(s) 456, 737, 907
BsmAI GTCTC 1 cut(s) 404
BsmBI CGTCTC 1 cut(s) 404
BsmFI GGGAC 1 cut(s) 460
BsmI GAATGC 1 cut(s) 873
BsnI GGCC 3 cut(s) 50, 860, 1108
Bsp1407I TGTACA 1 cut(s) 354
Bsp143I GATC 1 cut(s) 777
BspACI CCGC 1 cut(s) 604
BspANI GGCC 3 cut(s) 50, 860, 1108
BspCNI CTCAG 3 cut(s) 573, 748, 1081
BspHI TCATGA 1 cut(s) 114
BspLI GGNNCC 5 cut(s) 39, 51, 366, 448, 553
BspTI CTTAAG 1 cut(s) 928
BsrDI GCAATG 1 cut(s) 959
BsrFI RCCGGY 1 cut(s) 46
BsrGI TGTACA 1 cut(s) 354
BsrI ACTGG 5 cut(s) 136, 145, 211, 854, 1139
BssAI RCCGGY 1 cut(s) 46
BssMI GATC 1 cut(s) 777
BssSI CACGAG 1 cut(s) 991
Bst2BI CACGAG 1 cut(s) 991
Bst2UI CCWGG 2 cut(s) 789, 821
Bst4CI ACNGT 9 cut(s) 354, 361, 397, 459, 645, 902, 1009, 1021, 1046
Bst6I CTCTTC 2 cut(s) 310, 1069
BstAFI CTTAAG 1 cut(s) 928
BstAUI TGTACA 1 cut(s) 354
BstC8I GCNNGC 3 cut(s) 162, 612, 1097
BstDEI CTNAG 4 cut(s) 493, 581, 735, 1068
BstF5I GGATG 2 cut(s) 766, 829
BstKTI GATC 1 cut(s) 780
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 1 cut(s) 777
BstMWI GCNNNNNNNGC 2 cut(s) 26, 1105
BstNI CCWGG 2 cut(s) 789, 821
BstNSI RCATGY 1 cut(s) 1078
BstSCI CCNGG 2 cut(s) 787, 819
BstV1I GCAGC 3 cut(s) 496, 619, 626
BsuRI GGCC 3 cut(s) 50, 860, 1108
BtsCI GGATG 2 cut(s) 766, 829
BtsIMutI CAGTG 4 cut(s) 350, 366, 578, 1042
Cac8I GCNNGC 3 cut(s) 162, 612, 1097
CaiI CAGNNNCTG 1 cut(s) 200
CciI TCATGA 1 cut(s) 114
Cfr10I RCCGGY 1 cut(s) 46
Cfr13I GGNCC 4 cut(s) 49, 365, 447, 791
Csp6I GTAC 2 cut(s) 355, 1072
CspCI CAANNNNNGTGG 2 cut(s) 60, 95
CviAII CATG 7 cut(s) 115, 425, 656, 907, 942, 1075, 1080
CviQI GTAC 2 cut(s) 355, 1072
DdeI CTNAG 4 cut(s) 493, 581, 735, 1068
DpnI GATC 1 cut(s) 779
DpnII GATC 1 cut(s) 777
Eam1104I CTCTTC 2 cut(s) 310, 1069
EarI CTCTTC 2 cut(s) 310, 1069
Eco147I AGGCCT 1 cut(s) 1108
Eco47I GGWCC 3 cut(s) 365, 447, 791
Eco57I CTGAAG 2 cut(s) 255, 291
EcoO109I RGGNCCY 1 cut(s) 365
EcoRI GAATTC 1 cut(s) 911
EcoRII CCWGG 2 cut(s) 787, 819
Esp3I CGTCTC 1 cut(s) 404
FaeI CATG 7 cut(s) 118, 428, 659, 910, 945, 1078, 1083
FalI AAGNNNNNCTT 2 cut(s) 454, 486
FaqI GGGAC 1 cut(s) 460
FatI CATG 7 cut(s) 114, 424, 655, 906, 941, 1074, 1079
Fnu4HI GCNGC 4 cut(s) 510, 605, 608, 615
FokI GGATG 2 cut(s) 773, 836
Fsp4HI GCNGC 4 cut(s) 510, 605, 608, 615
FspBI CTAG 4 cut(s) 15, 635, 666, 720
GluI GCNGC 4 cut(s) 510, 605, 608, 615
GsuI CTGGAG 2 cut(s) 425, 1145
HaeIII GGCC 3 cut(s) 50, 860, 1108
HapII CCGG 1 cut(s) 47
Hin1II CATG 7 cut(s) 118, 428, 659, 910, 945, 1078, 1083
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 4 cut(s) 97, 264, 575, 662
HpaII CCGG 1 cut(s) 47
HphI GGTGA 2 cut(s) 992, 1051
Hpy166II GTNNAC 2 cut(s) 357, 393
Hpy188I TCNGA 3 cut(s) 235, 310, 525
Hpy188III TCNNGA 8 cut(s) 115, 194, 268, 404, 462, 480, 666, 1124
Hpy8I GTNNAC 2 cut(s) 357, 393
HpyAV CCTTC 2 cut(s) 248, 641
HpyCH4III ACNGT 9 cut(s) 354, 361, 397, 459, 645, 902, 1009, 1021, 1046
HpyCH4IV ACGT 1 cut(s) 413
HpyCH4V TGCA 4 cut(s) 29, 332, 419, 893
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 1105
HpyF3I CTNAG 4 cut(s) 493, 581, 735, 1068
HpySE526I ACGT 1 cut(s) 413
Hsp92II CATG 7 cut(s) 118, 428, 659, 910, 945, 1078, 1083
Kzo9I GATC 1 cut(s) 777
LmnI GCTCC 3 cut(s) 37, 551, 1000
Lsp1109I GCAGC 3 cut(s) 496, 619, 626
LweI GCATC 1 cut(s) 187
MaeI CTAG 4 cut(s) 15, 635, 666, 720
MaeII ACGT 1 cut(s) 413
MaeIII GTNAC 3 cut(s) 94, 902, 980
MalI GATC 1 cut(s) 779
MboI GATC 1 cut(s) 777
MboII GAAGA 5 cut(s) 17, 248, 297, 643, 1056
MluCI AATT 5 cut(s) 24, 77, 154, 531, 911
MlyI GAGTC 2 cut(s) 91, 656
MmeI TCCRAC 3 cut(s) 86, 664, 755
MseI TTAA 4 cut(s) 782, 888, 929, 971
MslI CAYNNNNRTG 2 cut(s) 429, 1047
MspCI CTTAAG 1 cut(s) 928
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 789, 821
Mva1269I GAATGC 1 cut(s) 873
MvaI CCWGG 2 cut(s) 789, 821
MwoI GCNNNNNNNGC 2 cut(s) 26, 1105
NdeII GATC 1 cut(s) 777
NlaIII CATG 7 cut(s) 118, 428, 659, 910, 945, 1078, 1083
NlaIV GGNNCC 5 cut(s) 39, 51, 366, 448, 553
NmuCI GTSAC 2 cut(s) 94, 980
NspI RCATGY 1 cut(s) 1078
OliI CACNNNNGTG 1 cut(s) 1047
PagI TCATGA 1 cut(s) 114
PceI AGGCCT 1 cut(s) 1108
PctI GAATGC 1 cut(s) 873
PfeI GAWTC 2 cut(s) 264, 575
PkrI GCNGC 4 cut(s) 511, 606, 609, 616
PleI GAGTC 2 cut(s) 91, 656
PpsI GAGTC 2 cut(s) 91, 656
PpuMI RGGWCCY 1 cut(s) 365
PshBI ATTAAT 1 cut(s) 888
Psp5II RGGWCCY 1 cut(s) 365
Psp6I CCWGG 2 cut(s) 787, 819
PspGI CCWGG 2 cut(s) 787, 819
PspN4I GGNNCC 5 cut(s) 39, 51, 366, 448, 553
PspPI GGNCC 4 cut(s) 49, 365, 447, 791
PspPPI RGGWCCY 1 cut(s) 365
PsrI GAACNNNNNNTAC 4 cut(s) 121, 153, 687, 719
PstNI CAGNNNCTG 1 cut(s) 200
RsaI GTAC 2 cut(s) 356, 1073
RsaNI GTAC 2 cut(s) 355, 1072
RseI CAYNNNNRTG 2 cut(s) 429, 1047
SaqAI TTAA 4 cut(s) 782, 888, 929, 971
SatI GCNGC 4 cut(s) 510, 605, 608, 615
Sau3AI GATC 1 cut(s) 777
Sau96I GGNCC 4 cut(s) 49, 365, 447, 791
SchI GAGTC 2 cut(s) 91, 656
ScrFI CCNGG 2 cut(s) 789, 821
SfaNI GCATC 1 cut(s) 187
SinI GGWCC 3 cut(s) 365, 447, 791
SmiMI CAYNNNNRTG 2 cut(s) 429, 1047
SmlI CTYRAG 3 cut(s) 386, 545, 928
SmoI CTYRAG 3 cut(s) 386, 545, 928
Sse9I AATT 5 cut(s) 24, 77, 154, 531, 911
SseBI AGGCCT 1 cut(s) 1108
SsiI CCGC 1 cut(s) 604
SspI AATATT 1 cut(s) 107
SspMI CTAG 4 cut(s) 15, 635, 666, 720
StuI AGGCCT 1 cut(s) 1108
StyD4I CCNGG 2 cut(s) 787, 819
TaaI ACNGT 9 cut(s) 354, 361, 397, 459, 645, 902, 1009, 1021, 1046
TaiI ACGT 1 cut(s) 416
TaqI TCGA 1 cut(s) 640
TaqII GACCGA 2 cut(s) 464, 465
TasI AATT 5 cut(s) 24, 77, 154, 531, 911
TatI WGTACW 2 cut(s) 354, 1071
TauI GCSGC 1 cut(s) 607
TfiI GAWTC 2 cut(s) 264, 575
Tru1I TTAA 4 cut(s) 782, 888, 929, 971
Tru9I TTAA 4 cut(s) 782, 888, 929, 971
TscAI CASTG 4 cut(s) 357, 366, 585, 1049
TseFI GTSAC 2 cut(s) 94, 980
TseI GCWGC 3 cut(s) 509, 607, 614
Tsp45I GTSAC 2 cut(s) 94, 980
TspDTI ATGAA 3 cut(s) 441, 704, 980
TspRI CASTG 4 cut(s) 357, 366, 585, 1049
Vha464I CTTAAG 1 cut(s) 928
VpaK11BI GGWCC 3 cut(s) 365, 447, 791
VspI ATTAAT 1 cut(s) 888
XapI RAATTY 2 cut(s) 154, 911
XbaI TCTAGA 1 cut(s) 665
XceI RCATGY 1 cut(s) 1078
XspI CTAG 4 cut(s) 15, 635, 666, 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.