Rroxscaffold_2G00091780

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001253
Physical Location & Seq
Forward (+)
13320672 .. 13330239
9568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00091780.1

Sequence Viewer

Length: 2277 bp
ATGGAGGATTTGCCTCCGCCACCTCCTATTGTACCACCGAATGTGAAGCCAGAAGTTGTAGCTCTGGCTCCTCCTAAGCACTCTATTATGGTTAGGCCACATGGGAGTGGAACCACAGGGCGGCGCATACAATTGAGCACTAACCACTTCAAAGTTTCTGTGAAGAATCCAGATGTTGTGTTCTACCAGTACTCTGTTCTGATAACTTATGAAGATAAGAGACCTGTTGAAGGCATGGGACTTGGGAGAAAGCTGCACTGTTCCAATCGGTCGAAAACATTCAATGTAGAGATAAGTTATGCTGCCAAAATACCTCTCAAGTCAATTGCTCTTGCTCTTCAAGGAGCTGAAGTAGACAACACTCAGGATGCATTGAGAGTGCTTGATATTATTCTACGGCAGAAAGCAGCTAAGATGTATATGGGATGCCTTCTAGTACGACAGTCATTCTTCCATGATGACTCCAGGAACTTTGTTGAGATTGGAGGAGGTGTGACTGGTGTCCGGGATGTATCTACAACAATGATTGTGACGCCTGGACCTGTTATTGATTTTCTGTTAACCAACCAGGGTGTACGAGAACCCCGCTACATTGACTGGGTAAAGGCCAAAAGAATGCTGAAAAATATGAGGATTACAACAAGACACCGTAACATGGAGTGCAAAATCACTGGGTTGAGTGAGAAGACCTGCAATAATCAGTTGTTTAATCTGAAGCTAAGAAGTGGTGATGGCACGAGTGAGGGGGAAACTGTGGAGATTACGGTGTATGAATATTTCGTCAAACACTGTGGCATAGAGCTCACCTATTCTCAACACATGCCATGCCTTGATGTTGGCAAGCCAAAGAGGCCCACTTATGTTCCAGTTGAGCTATGTTCACTTGTTTCACTACAAAGGTATACAAAAGCATTATCTTCCCAGCAAAGAGCCTCCTTAGTGGAAAAATCAAGGCAGAAGCCTCTGGAGAGAATAAAGAGTGTGACTGATGCTTTAAGAAATTACCGCTATGATGAGGATCCTGTGCTTGCTGAATGCGGTATATCTATAGAGAAGCAACTGATTCAGATGGATGGCCGTATTCTTGAGACCCCAAAGTTAAAGGTAGGTGGCAATGAGGACATGATGCCCTTTAAGGGACGATGGAACTTCAAAGGAAAGTCATTTTTGGATCCTACTCGCATTAACTCTTGGCTAGCTGTCAACTTCTCTGGACGCTGTGACCTTAGTCAAATCTCTCGGGAGCTTATCAATGTTGGGAAGAAGACTGGAATTCAAATTGAGCGCCCCAAAACTCTAATTGAGGAAGATCCGCGAGCTGAAAGACTAGGCCCTGTTGCTAGAGTAGACAAGATGTTTGAACAGATTCAGGCTAAGCTCCAAGAACCACCTGAGTTCATTCTGTGTGTCATACCCAAGAAAGGTTCTGATATCTATGATATTCCTTCAGTTGCTGCGGTTGTTAGCTCTTGTAGTTGGCCTCTTATATCAAGGTACAGAGCAGCTGTTAGAACACAATCTCCTAAGGTGGAGATGATTGATGGTCTATACAAGCCACTTCCTAATGGAAATGATGATGGTATTATCAGGGAACTGCTTCTGGACTTCTATAACACAAGCAAAGGACGCAAACCAACTCAGATCATTGTTTTCAGGGATGGCGTCAGTGAATCACAGTTTAATCAAGTGCTGAACATTGAGCTGGATCAAATTGTAAAGGCTTACCAGCACCTTGGGGAGGAAAATGTTCCAAAGTTCACTCTCATTATAGCTCAAAAGAATCATCACACAAAGCTATTCCAAGCTAATAGCCCTGACAATGTTCCACCAGGGACAGTTGTTGACACAAAAATCGTGCACCCAAGGATCTATGATTTCTACATGTGTGCTCAGGCTGGCATGATTGGAACTTCGAGGCCGGCTCACTATCATGTCTTGCTTGATGAGATTGGCTTTTCCCCTGATGACTTGCAGAACCTGATTCACTCCCTTTCTTATGTGTACCAAAGGAGCTGTACTGCAATATCCATTGTGGCACCCATATGCTATGCGCACCTTGCTGCAGCACAAGTGGGGCAGTTTATGAAGTTTGAAGATCTATCAGAAACTTCATCAGCTAAAGGTAGTGTCACAACATCAGAGAGCATCCCAGTTCCCGAGCTCCCTAGGCTTCATAGAAAGATGTTATTAGGACAACTCCAGCTTTTGGTGTTATGTGAGATAGAGCGCTATAGGCATTCTCGTTGTGGACAACTTTTGAGACCTCATGTGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

758

Amino Acids

85.41

Weight (kDa)

9.05

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAZ PF02170 183 - 313 3.8e-29 PAZ domain
ArgoL2 PF16488 323 - 368 4.4e-12 Argonaute linker 2 domain
ArgoMid PF16487 376 - 434 7.3e-06 Mid domain of argonaute
Piwi PF02171 479 - 696 4.8e-76 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 2052
Acc36I ACCTGC 1 cut(s) 698
AccB1I GGYRCC 1 cut(s) 2035
AccB7I CCANNNNNTGG 1 cut(s) 2206
AccI GTMKAC 3 cut(s) 354, 902, 1347
AccII CGCG 1 cut(s) 1315
AciI CCGC 7 cut(s) 17, 121, 586, 1006, 1038, 1313, 1457
AclWI GGATC 7 cut(s) 1013, 1026, 1166, 1179, 1304, 1713, 1874
AcoI YGGCCR 1 cut(s) 1075
AcsI RAATTY 1 cut(s) 1272
AcuI CTGAAG 3 cut(s) 369, 734, 1431
AcyI GRCGYC 2 cut(s) 533, 1662
AfaI GTAC 7 cut(s) 33, 191, 438, 576, 1496, 2003, 2017
AfeI AGCGCT 1 cut(s) 2228
AfiI CCNNNNNNNGG 7 cut(s) 120, 230, 655, 1136, 1421, 1738, 2206
AflIII ACRYGT 1 cut(s) 1881
AgsI TTSAA 8 cut(s) 151, 230, 283, 341, 1153, 1277, 1361, 2093
AjnI CCWGG 4 cut(s) 464, 535, 567, 1828
AloI GAACNNNNNNTCC 2 cut(s) 1504, 1536
Alw21I GWGCWC 5 cut(s) 140, 804, 1860, 1891, 2163
Alw26I GTCTC 3 cut(s) 214, 1082, 2254
Alw44I GTGCAC 1 cut(s) 1856
AlwI GGATC 7 cut(s) 1013, 1026, 1166, 1179, 1304, 1713, 1874
AlwNI CAGNNNCTG 2 cut(s) 1454, 1978
Ama87I CYCGRG 2 cut(s) 1239, 2156
Aor51HI AGCGCT 1 cut(s) 2228
AoxI GGCC 7 cut(s) 95, 606, 851, 1075, 1330, 1478, 1916
ApaLI GTGCAC 1 cut(s) 1856
ApeKI GCWGC 7 cut(s) 253, 302, 407, 1454, 1502, 2060, 2063
ApoI RAATTY 1 cut(s) 1272
ArsI GACNNNNNNTTYG 2 cut(s) 1340, 1372
Asp700I GAANNNNTTC 4 cut(s) 278, 1365, 1596, 1746
AspA2I CCTAGG 1 cut(s) 2165
AspLEI GCGC 4 cut(s) 126, 1287, 2053, 2229
AspS9I GGNCC 3 cut(s) 539, 852, 1331
AsuC2I CCSGG 1 cut(s) 506
AsuHPI GGTGA 2 cut(s) 740, 796
AsuNHI GCTAGC 1 cut(s) 1195
AvaI CYCGRG 2 cut(s) 1239, 2156
AvaII GGWCC 1 cut(s) 539
AvrII CCTAGG 1 cut(s) 2165
AxyI CCTNAGG 1 cut(s) 1524
BaeGI GKGCMC 1 cut(s) 1860
BamHI GGATCC 2 cut(s) 1018, 1171
BanI GGYRCC 1 cut(s) 2035
BanII GRGCYC 2 cut(s) 804, 2163
BauI CACGAG 1 cut(s) 736
BbsI GAAGAC 2 cut(s) 692, 1271
Bbv12I GWGCWC 5 cut(s) 140, 804, 1860, 1891, 2163
BbvI GCAGC 7 cut(s) 240, 289, 419, 1441, 1514, 2047, 2075
BccI CCATC 7 cut(s) 725, 1063, 1067, 1137, 1535, 1571, 1652
BceAI ACGGC 2 cut(s) 413, 1062
BciT130I CCWGG 4 cut(s) 466, 537, 569, 1830
BcnI CCSGG 1 cut(s) 506
BcoDI GTCTC 3 cut(s) 214, 1082, 2254
BfaI CTAG 5 cut(s) 434, 1196, 1328, 1341, 2166
BfmI CTRYAG 3 cut(s) 1047, 2061, 2230
BfoI RGCGCY 2 cut(s) 1288, 2230
BfuAI ACCTGC 1 cut(s) 698
BglI GCCNNNNNGGC 1 cut(s) 850
BglII AGATCT 1 cut(s) 2095
BisI GCNGC 8 cut(s) 122, 254, 303, 408, 1455, 1503, 2061, 2064
BlnI CCTAGG 1 cut(s) 2165
BlpI GCTNAGC 1 cut(s) 1374
BlsI GCNGC 8 cut(s) 123, 255, 304, 409, 1456, 1504, 2062, 2065
BmcAI AGTACT 1 cut(s) 191
Bme1390I CCNGG 5 cut(s) 466, 506, 537, 569, 1830
Bme18I GGWCC 1 cut(s) 539
BmeT110I CYCGRG 2 cut(s) 1239, 2156
BmgT120I GGNCC 3 cut(s) 539, 852, 1331
BmiI GGNNCC 5 cut(s) 69, 112, 1020, 1173, 2037
BmrFI CCNGG 5 cut(s) 466, 506, 537, 569, 1830
BmrI ACTGGG 3 cut(s) 607, 681, 2144
BmsI GCATC 5 cut(s) 358, 416, 979, 1116, 2154
BmtI GCTAGC 1 cut(s) 1199
BmuI ACTGGG 3 cut(s) 607, 681, 2144
BoxI GACNNNNGTC 2 cut(s) 500, 1227
BpiI GAAGAC 2 cut(s) 692, 1271
BplI GAGNNNNNCTC 2 cut(s) 1906, 1938
BpmI CTGGAG 3 cut(s) 448, 986, 2183
Bpu10I CCTNAGC 2 cut(s) 75, 1890
Bpu1102I GCTNAGC 1 cut(s) 1374
BpuEI CTTGAG 2 cut(s) 302, 1106
BpuMI CCSGG 1 cut(s) 506
BsaBI GATNNNNATC 1 cut(s) 1017
BsaHI GRCGYC 2 cut(s) 533, 1662
BsaI GGTCTC 3 cut(s) 214, 1082, 2254
BsaJI CCNNGG 5 cut(s) 568, 1732, 1829, 1862, 2165
BsaXI ACNNNNNCTCC 6 cut(s) 336, 366, 477, 507, 1504, 1534
Bsc4I CCNNNNNNNGG 7 cut(s) 120, 230, 655, 1136, 1421, 1738, 2206
Bse118I RCCGGY 1 cut(s) 1918
Bse1I ACTGG 7 cut(s) 187, 502, 602, 676, 866, 1273, 2150
Bse21I CCTNAGG 1 cut(s) 1524
Bse3DI GCAATG 1 cut(s) 1120
Bse8I GATNNNNATC 1 cut(s) 1017
BseBI CCWGG 4 cut(s) 466, 537, 569, 1830
BseDI CCNNGG 5 cut(s) 568, 1732, 1829, 1862, 2165
BseGI GGATG 6 cut(s) 373, 431, 514, 1078, 1663, 2145
BseJI GATNNNNATC 1 cut(s) 1017
BseLI CCNNNNNNNGG 7 cut(s) 120, 230, 655, 1136, 1421, 1738, 2206
BseMI GCAATG 1 cut(s) 1120
BseMII CTCAG 4 cut(s) 377, 1383, 1652, 1904
BseNI ACTGG 7 cut(s) 187, 502, 602, 676, 866, 1273, 2150
BseRI GAGGAG 2 cut(s) 60, 501
BseSI GKGCMC 1 cut(s) 1860
BseXI GCAGC 7 cut(s) 240, 289, 419, 1441, 1514, 2047, 2075
BseYI CCCAGC 1 cut(s) 921
BsgI GTGCAG 1 cut(s) 239
Bsh1236I CGCG 1 cut(s) 1315
Bsh1285I CGRYCG 1 cut(s) 272
BshFI GGCC 7 cut(s) 97, 608, 853, 1077, 1332, 1480, 1918
BshNI GGYRCC 1 cut(s) 2035
BsiEI CGRYCG 1 cut(s) 272
BsiHKAI GWGCWC 5 cut(s) 140, 804, 1860, 1891, 2163
BsiHKCI CYCGRG 2 cut(s) 1239, 2156
BsiSI CCGG 2 cut(s) 505, 1919
BslFI GGGAC 3 cut(s) 252, 1152, 1846
BslI CCNNNNNNNGG 7 cut(s) 120, 230, 655, 1136, 1421, 1738, 2206
BsmAI GTCTC 3 cut(s) 214, 1082, 2254
BsmFI GGGAC 3 cut(s) 252, 1152, 1846
BsmI GAATGC 3 cut(s) 621, 1040, 2236
BsnI GGCC 7 cut(s) 97, 608, 853, 1077, 1332, 1480, 1918
Bso31I GGTCTC 3 cut(s) 214, 1082, 2254
BsoBI CYCGRG 2 cut(s) 1239, 2156
Bsp1286I GDGCHC 5 cut(s) 140, 804, 1860, 1891, 2163
Bsp143I GATC 7 cut(s) 1018, 1171, 1309, 1641, 1705, 1866, 2095
Bsp1720I GCTNAGC 1 cut(s) 1374
BspACI CCGC 7 cut(s) 17, 121, 586, 1006, 1038, 1313, 1457
BspANI GGCC 7 cut(s) 97, 608, 853, 1077, 1332, 1480, 1918
BspCNI CTCAG 4 cut(s) 376, 1384, 1651, 1903
BspFNI CGCG 1 cut(s) 1315
BspLI GGNNCC 5 cut(s) 69, 112, 1020, 1173, 2037
BspMAI CTGCAG 1 cut(s) 2065
BspMI ACCTGC 1 cut(s) 698
BspOI GCTAGC 1 cut(s) 1199
BspPI GGATC 7 cut(s) 1013, 1026, 1166, 1179, 1304, 1713, 1874
BspQI GCTCTTC 1 cut(s) 342
BspT107I GGYRCC 1 cut(s) 2035
BspTNI GGTCTC 3 cut(s) 214, 1082, 2254
BsrDI GCAATG 1 cut(s) 1120
BsrFI RCCGGY 1 cut(s) 1918
BsrI ACTGG 7 cut(s) 187, 502, 602, 676, 866, 1273, 2150
BssAI RCCGGY 1 cut(s) 1918
BssECI CCNNGG 5 cut(s) 568, 1732, 1829, 1862, 2165
BssMI GATC 7 cut(s) 1018, 1171, 1309, 1641, 1705, 1866, 2095
BssNAI GTATAC 1 cut(s) 903
BssNI GRCGYC 2 cut(s) 533, 1662
BssSI CACGAG 1 cut(s) 736
BssT1I CCWWGG 3 cut(s) 1732, 1862, 2165
Bst1107I GTATAC 1 cut(s) 903
Bst2BI CACGAG 1 cut(s) 736
Bst2UI CCWGG 4 cut(s) 466, 537, 569, 1830
Bst4CI ACNGT 8 cut(s) 260, 444, 650, 754, 766, 791, 1677, 1837
Bst6I CTCTTC 1 cut(s) 342
BstACI GRCGYC 2 cut(s) 533, 1662
BstC8I GCNNGC 6 cut(s) 842, 1029, 1197, 1317, 1897, 1920
BstENI CCTNNNNNAGG 2 cut(s) 228, 1736
BstF5I GGATG 6 cut(s) 373, 431, 514, 1078, 1663, 2145
BstFNI CGCG 1 cut(s) 1315
BstH2I RGCGCY 2 cut(s) 1288, 2230
BstHHI GCGC 4 cut(s) 126, 1287, 2053, 2229
BstKTI GATC 7 cut(s) 1021, 1174, 1312, 1644, 1708, 1869, 2098
BstMAI GTCTC 3 cut(s) 214, 1082, 2254
BstMBI GATC 7 cut(s) 1018, 1171, 1309, 1641, 1705, 1866, 2095
BstMCI CGRYCG 1 cut(s) 272
BstMWI GCNNNNNNNGC 5 cut(s) 850, 1626, 2057, 2167, 2233
BstNI CCWGG 4 cut(s) 466, 537, 569, 1830
BstNSI RCATGY 2 cut(s) 823, 1885
BstPAI GACNNNNGTC 2 cut(s) 500, 1227
BstSCI CCNGG 5 cut(s) 464, 504, 535, 567, 1828
BstSFI CTRYAG 3 cut(s) 1047, 2061, 2230
BstSLI GKGCMC 1 cut(s) 1860
BstUI CGCG 1 cut(s) 1315
BstV1I GCAGC 7 cut(s) 240, 289, 419, 1441, 1514, 2047, 2075
BstV2I GAAGAC 2 cut(s) 692, 1271
BstX2I RGATCY 5 cut(s) 1018, 1171, 1309, 1866, 2095
BstXI CCANNNNNNTGG 1 cut(s) 1733
BstYI RGATCY 5 cut(s) 1018, 1171, 1309, 1866, 2095
BstZ17I GTATAC 1 cut(s) 903
Bsu36I CCTNAGG 1 cut(s) 1524
BsuRI GGCC 7 cut(s) 97, 608, 853, 1077, 1332, 1480, 1918
BtsCI GGATG 6 cut(s) 373, 431, 514, 1078, 1663, 2145
BtsIMutI CAGTG 4 cut(s) 256, 669, 787, 1672
BveI ACCTGC 1 cut(s) 698
Cac8I GCNNGC 6 cut(s) 842, 1029, 1197, 1317, 1897, 1920
CaiI CAGNNNCTG 2 cut(s) 1454, 1978
CfoI GCGC 4 cut(s) 126, 1287, 2053, 2229
Cfr10I RCCGGY 1 cut(s) 1918
Cfr13I GGNCC 3 cut(s) 539, 852, 1331
CseI GACGC 4 cut(s) 541, 1224, 1635, 1651
Csp6I GTAC 7 cut(s) 32, 190, 437, 575, 1495, 2002, 2016
CspCI CAANNNNNGTGG 2 cut(s) 772, 807
CviQI GTAC 7 cut(s) 32, 190, 437, 575, 1495, 2002, 2016
DpnI GATC 7 cut(s) 1020, 1173, 1311, 1643, 1707, 1868, 2097
DpnII GATC 7 cut(s) 1018, 1171, 1309, 1641, 1705, 1866, 2095
EaeI YGGCCR 1 cut(s) 1075
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
EciI GGCGGA 1 cut(s) 6
Ecl136II GAGCTC 2 cut(s) 802, 2161
Eco130I CCWWGG 3 cut(s) 1732, 1862, 2165
Eco24I GRGCYC 2 cut(s) 804, 2163
Eco31I GGTCTC 3 cut(s) 214, 1082, 2254
Eco32I GATATC 1 cut(s) 1432
Eco47I GGWCC 1 cut(s) 539
Eco47III AGCGCT 1 cut(s) 2228
Eco53kI GAGCTC 2 cut(s) 802, 2161
Eco57I CTGAAG 3 cut(s) 369, 734, 1431
Eco81I CCTNAGG 1 cut(s) 1524
Eco88I CYCGRG 2 cut(s) 1239, 2156
EcoICRI GAGCTC 2 cut(s) 802, 2161
EcoNI CCTNNNNNAGG 2 cut(s) 228, 1736
EcoO109I RGGNCCY 1 cut(s) 1331
EcoRI GAATTC 1 cut(s) 1272
EcoRII CCWGG 4 cut(s) 464, 535, 567, 1828
EcoRV GATATC 1 cut(s) 1432
EcoT14I CCWWGG 3 cut(s) 1732, 1862, 2165
EcoT22I ATGCAT 1 cut(s) 373
EcoT38I GRGCYC 2 cut(s) 804, 2163
ErhI CCWWGG 3 cut(s) 1732, 1862, 2165
FaqI GGGAC 3 cut(s) 252, 1152, 1846
FauI CCCGC 1 cut(s) 593
FauNDI CATATG 1 cut(s) 2042
FblI GTMKAC 3 cut(s) 354, 902, 1347
Fnu4HI GCNGC 8 cut(s) 122, 254, 303, 408, 1455, 1503, 2061, 2064
FokI GGATG 6 cut(s) 380, 438, 521, 1085, 1670, 2132
FriOI GRGCYC 2 cut(s) 804, 2163
Fsp4HI GCNGC 8 cut(s) 122, 254, 303, 408, 1455, 1503, 2061, 2064
FspAI RTGCGCAY 1 cut(s) 2052
FspBI CTAG 5 cut(s) 434, 1196, 1328, 1341, 2166
FspI TGCGCA 1 cut(s) 2052
GlaI GCGC 4 cut(s) 125, 1286, 2052, 2228
GluI GCNGC 8 cut(s) 122, 254, 303, 408, 1455, 1503, 2061, 2064
GsaI CCCAGC 1 cut(s) 925
GsuI CTGGAG 3 cut(s) 448, 986, 2183
HaeII RGCGCY 2 cut(s) 1288, 2230
HaeIII GGCC 7 cut(s) 97, 608, 853, 1077, 1332, 1480, 1918
HapII CCGG 2 cut(s) 505, 1919
HgaI GACGC 4 cut(s) 541, 1224, 1635, 1651
HhaI GCGC 4 cut(s) 126, 1287, 2053, 2229
Hin1I GRCGYC 2 cut(s) 533, 1662
Hin6I GCGC 4 cut(s) 124, 1285, 2051, 2227
HinP1I GCGC 4 cut(s) 124, 1285, 2051, 2227
HincII GTYRAC 3 cut(s) 561, 1204, 1843
HindII GTYRAC 3 cut(s) 561, 1204, 1843
HinfI GANTC 7 cut(s) 166, 461, 1063, 1366, 1670, 1780, 1981
HpaI GTTAAC 1 cut(s) 561
HpaII CCGG 2 cut(s) 505, 1919
HphI GGTGA 2 cut(s) 740, 796
Hpy188I TCNGA 7 cut(s) 201, 714, 1068, 1429, 1641, 2104, 2140
Hpy188III TCNNGA 8 cut(s) 170, 365, 965, 1085, 1212, 1241, 1601, 2156
HpyAV CCTTC 3 cut(s) 224, 440, 1455
HpyCH4III ACNGT 8 cut(s) 260, 444, 650, 754, 766, 791, 1677, 1837
HpyCH4V TGCA 8 cut(s) 256, 371, 663, 693, 1858, 1972, 2021, 2063
HpyF10VI GCNNNNNNNGC 5 cut(s) 850, 1626, 2057, 2167, 2233
Hsp92I GRCGYC 2 cut(s) 533, 1662
HspAI GCGC 4 cut(s) 124, 1285, 2051, 2227
KroI GCCGGC 1 cut(s) 1918
KroNI GCCGGC 1 cut(s) 1920
KspAI GTTAAC 1 cut(s) 561
Kzo9I GATC 7 cut(s) 1018, 1171, 1309, 1641, 1705, 1866, 2095
LguI GCTCTTC 1 cut(s) 342
LmnI GCTCC 6 cut(s) 73, 344, 1243, 1383, 2010, 2166
Lsp1109I GCAGC 7 cut(s) 240, 289, 419, 1441, 1514, 2047, 2075
LweI GCATC 5 cut(s) 358, 416, 979, 1116, 2154
MaeI CTAG 5 cut(s) 434, 1196, 1328, 1341, 2166
MaeIII GTNAC 6 cut(s) 493, 529, 650, 982, 1220, 2128
MalI GATC 7 cut(s) 1020, 1173, 1311, 1643, 1707, 1868, 2097
MboI GATC 7 cut(s) 1018, 1171, 1309, 1641, 1705, 1866, 2095
MfeI CAATTG 2 cut(s) 131, 324
MflI RGATCY 5 cut(s) 1018, 1171, 1309, 1866, 2095
MhlI GDGCHC 5 cut(s) 140, 804, 1860, 1891, 2163
MluCI AATT 7 cut(s) 131, 324, 1000, 1272, 1278, 1299, 1710
MlyI GAGTC 1 cut(s) 455
Mph1103I ATGCAT 1 cut(s) 373
MroNI GCCGGC 1 cut(s) 1918
MroXI GAANNNNTTC 4 cut(s) 278, 1365, 1596, 1746
MseI TTAA 7 cut(s) 560, 708, 995, 1100, 1134, 1185, 1680
MslI CAYNNNNRTG 3 cut(s) 105, 1929, 2041
MspA1I CMGCKG 1 cut(s) 1505
MspI CCGG 2 cut(s) 505, 1919
MspR9I CCNGG 5 cut(s) 466, 506, 537, 569, 1830
MunI CAATTG 2 cut(s) 131, 324
Mva1269I GAATGC 3 cut(s) 621, 1040, 2236
MvaI CCWGG 4 cut(s) 466, 537, 569, 1830
MvnI CGCG 1 cut(s) 1315
MwoI GCNNNNNNNGC 5 cut(s) 850, 1626, 2057, 2167, 2233
NaeI GCCGGC 1 cut(s) 1920
NciI CCSGG 1 cut(s) 506
NdeI CATATG 1 cut(s) 2042
NdeII GATC 7 cut(s) 1018, 1171, 1309, 1641, 1705, 1866, 2095
NgoMIV GCCGGC 1 cut(s) 1918
NheI GCTAGC 1 cut(s) 1195
NlaIV GGNNCC 5 cut(s) 69, 112, 1020, 1173, 2037
NmuCI GTSAC 5 cut(s) 493, 529, 982, 1220, 2128
NsbI TGCGCA 1 cut(s) 2052
NsiI ATGCAT 1 cut(s) 373
NspI RCATGY 2 cut(s) 823, 1885
PciI ACATGT 1 cut(s) 1881
PciSI GCTCTTC 1 cut(s) 342
PctI GAATGC 3 cut(s) 621, 1040, 2236
PdiI GCCGGC 1 cut(s) 1920
PdmI GAANNNNTTC 4 cut(s) 278, 1365, 1596, 1746
PfeI GAWTC 6 cut(s) 166, 1063, 1366, 1670, 1780, 1981
PflMI CCANNNNNTGG 1 cut(s) 2206
PfoI TCCNGGA 2 cut(s) 464, 504
PkrI GCNGC 8 cut(s) 123, 255, 304, 409, 1456, 1504, 2062, 2065
PleI GAGTC 1 cut(s) 455
PpsI GAGTC 1 cut(s) 455
PscI ACATGT 1 cut(s) 1881
PshAI GACNNNNGTC 2 cut(s) 500, 1227
Psp124BI GAGCTC 2 cut(s) 804, 2163
Psp6I CCWGG 4 cut(s) 464, 535, 567, 1828
PspFI CCCAGC 1 cut(s) 921
PspGI CCWGG 4 cut(s) 464, 535, 567, 1828
PspN4I GGNNCC 5 cut(s) 69, 112, 1020, 1173, 2037
PspPI GGNCC 3 cut(s) 539, 852, 1331
PstI CTGCAG 1 cut(s) 2065
PstNI CAGNNNCTG 2 cut(s) 1454, 1978
PsuI RGATCY 5 cut(s) 1018, 1171, 1309, 1866, 2095
PvuII CAGCTG 1 cut(s) 1505
RsaI GTAC 7 cut(s) 33, 191, 438, 576, 1496, 2003, 2017
RsaNI GTAC 7 cut(s) 32, 190, 437, 575, 1495, 2002, 2016
RseI CAYNNNNRTG 3 cut(s) 105, 1929, 2041
SacI GAGCTC 2 cut(s) 804, 2163
SapI GCTCTTC 1 cut(s) 342
SaqAI TTAA 7 cut(s) 560, 708, 995, 1100, 1134, 1185, 1680
SatI GCNGC 8 cut(s) 122, 254, 303, 408, 1455, 1503, 2061, 2064
Sau3AI GATC 7 cut(s) 1018, 1171, 1309, 1641, 1705, 1866, 2095
Sau96I GGNCC 3 cut(s) 539, 852, 1331
ScaI AGTACT 1 cut(s) 191
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 5 cut(s) 466, 506, 537, 569, 1830
SduI GDGCHC 5 cut(s) 140, 804, 1860, 1891, 2163
SfaNI GCATC 5 cut(s) 358, 416, 979, 1116, 2154
SfcI CTRYAG 3 cut(s) 1047, 2061, 2230
SinI GGWCC 1 cut(s) 539
SmiMI CAYNNNNRTG 3 cut(s) 105, 1929, 2041
SmlI CTYRAG 2 cut(s) 317, 1085
SmoI CTYRAG 2 cut(s) 317, 1085
Sse9I AATT 7 cut(s) 131, 324, 1000, 1272, 1278, 1299, 1710
SsiI CCGC 7 cut(s) 17, 121, 586, 1006, 1038, 1313, 1457
SspI AATATT 1 cut(s) 776
SspMI CTAG 5 cut(s) 434, 1196, 1328, 1341, 2166
SstI GAGCTC 2 cut(s) 804, 2163
StyD4I CCNGG 5 cut(s) 464, 504, 535, 567, 1828
StyI CCWWGG 3 cut(s) 1732, 1862, 2165
TaaI ACNGT 8 cut(s) 260, 444, 650, 754, 766, 791, 1677, 1837
TaqI TCGA 2 cut(s) 272, 1913
TaqII GACCGA 1 cut(s) 258
TasI AATT 7 cut(s) 131, 324, 1000, 1272, 1278, 1299, 1710
TatI WGTACW 2 cut(s) 189, 2015
TauI GCSGC 1 cut(s) 124
TfiI GAWTC 6 cut(s) 166, 1063, 1366, 1670, 1780, 1981
Tru1I TTAA 7 cut(s) 560, 708, 995, 1100, 1134, 1185, 1680
Tru9I TTAA 7 cut(s) 560, 708, 995, 1100, 1134, 1185, 1680
TscAI CASTG 4 cut(s) 263, 676, 794, 1672
TseFI GTSAC 5 cut(s) 493, 529, 982, 1220, 2128
TseI GCWGC 7 cut(s) 253, 302, 407, 1454, 1502, 2060, 2063
Tsp45I GTSAC 5 cut(s) 493, 529, 982, 1220, 2128
TspDTI ATGAA 6 cut(s) 225, 786, 1387, 2099, 2100, 2162
TspRI CASTG 4 cut(s) 263, 676, 794, 1672
Van91I CCANNNNNTGG 1 cut(s) 2206
VneI GTGCAC 1 cut(s) 1856
VpaK11BI GGWCC 1 cut(s) 539
XagI CCTNNNNNAGG 2 cut(s) 228, 1736
XapI RAATTY 1 cut(s) 1272
XceI RCATGY 2 cut(s) 823, 1885
XmaJI CCTAGG 1 cut(s) 2165
XmiI GTMKAC 3 cut(s) 354, 902, 1347
XmnI GAANNNNTTC 4 cut(s) 278, 1365, 1596, 1746
XspI CTAG 5 cut(s) 434, 1196, 1328, 1341, 2166
ZrmI AGTACT 1 cut(s) 191
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.