Rh2DG553400

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001253
Physical Location & Seq
Reverse (-)
78236268 .. 78241232
4965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG553400.1

Sequence Viewer

Length: 1140 bp
ATGATCATGACTCCTGGACCGGTAATAGATTTTCTGATTGCCAACCAGGGTGTGCGAGAACCCCGCAACATTGACTGGGTAAAGGCCAAGAGAATGCTGAAAAACATGAGGATTAAGACGAGACACCGTAACATGGAATTTAAAATAATAGGCATCAGCGAGAAGCCCTGCAATCTGCAATACTTTCCTATGAAGTTAAAGCCTGGTGATGGTGCAAGTGAAGGGGAGACTGCAGAGGTTACTGTGTTTGAGTATTTCACCAAACACTGTGGCATTGAACTCACTTACTCTGCATACCTGCCATGCCTTGATGTTGGCAAACCAAAAAGGCCCAACTATCTGCCTCTGGAGCTCTGTGCGCTTGTTTCGTTACAACGGTATACGAAAGCATTATCTTCACAGCAGAGGGCATCCTTAGTTGAAAAATCAAGGCAGAAGCCTCAGGATAGAATACGAACTGTGACTGATGTAACAGTGAGGATTGCACCCCTTTTAAGGGACGATGGAACTTCAACAACAAGGGAACTGCTTGTCGACTTCTATAAGACAAGCGGTGGACGTAAACCAACTCAGATTATTGTCTTCAGGGATGGAGTAAGTGAATCACAGTTTAATCAAGTCCTGAACATTGAGCTGGATCAAATCGTAAAGGCTTACCAGCACCTAGGGGAGGCTAATATTCCAAAGTTTACTGTGATTGTGGCTCAGAAGAATCATCACACAAAGCTATTCCAAACTAATTCCCCTGATAATGTTCCACCAGGGACTGTTGTTGACACCAAAATTGTGCATCCAAGGAATTATGATTTCTACATGTGTGCTCAGGCAGGCATGATTGGAACTTCCAGGCCAGCTCACTATCATGTCTTGCTGGATGAGATTGGCTTTTCCCCTGATGACTTGCAAAACCTGATCCACTCCCTTTCTTATGTGTACCAGAGAAGTACAACTGCAATCTCTATTGTGGCGCCCATATGCTACGCGCACCTTGCTGCAGCACAAGTGGGGCAGTTCATGAAGTTTGAAGATCTCTCGGACACCTCATCGGGGAAGGGCAGTGTCACTTCATCAGAGAGCATCCCAGTTCAAGAGCTTCCCAGGCTTCATGAGAAGGTCCAGGGCTCCATGTTCTTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

379

Amino Acids

42.68

Weight (kDa)

8.91

Isoelectric Point (pI)

33.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAZ PF02170 9 - 139 4.3e-30 PAZ domain
Piwi PF02171 170 - 340 7.6e-70 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 306
AccB1I GGYRCC 1 cut(s) 967
AccI GTMKAC 2 cut(s) 380, 534
AccII CGCG 1 cut(s) 983
AciI CCGC 2 cut(s) 64, 552
AclWI GGATC 2 cut(s) 645, 907
AcsI RAATTY 1 cut(s) 137
AcuI CTGAAG 1 cut(s) 568
AcyI GRCGYC 1 cut(s) 968
AfaI GTAC 2 cut(s) 935, 946
AfiI CCNNNNNNNGG 6 cut(s) 133, 209, 495, 496, 670, 1047
AflIII ACRYGT 1 cut(s) 813
AgeI ACCGGT 1 cut(s) 19
AgsI TTSAA 5 cut(s) 278, 422, 513, 1025, 1088
AjnI CCWGG 7 cut(s) 13, 45, 202, 760, 845, 1097, 1116
AluBI AGCT 5 cut(s) 352, 634, 727, 854, 1093
AluI AGCT 5 cut(s) 352, 634, 727, 854, 1093
Alw21I GWGCWC 2 cut(s) 354, 823
Alw26I GTCTC 2 cut(s) 115, 221
AlwI GGATC 2 cut(s) 645, 907
AlwNI CAGNNNCTG 1 cut(s) 767
AoxI GGCC 3 cut(s) 84, 329, 848
ApeKI GCWGC 2 cut(s) 992, 995
ApoI RAATTY 1 cut(s) 137
AsiGI ACCGGT 1 cut(s) 19
AspA2I CCTAGG 1 cut(s) 664
AspLEI GCGC 3 cut(s) 361, 970, 985
AspS9I GGNCC 3 cut(s) 17, 330, 1114
AsuHPI GGTGA 2 cut(s) 218, 250
AvaII GGWCC 2 cut(s) 17, 1114
AvrII CCTAGG 1 cut(s) 664
AxyI CCTNAGG 1 cut(s) 441
BanI GGYRCC 1 cut(s) 967
BanII GRGCYC 2 cut(s) 354, 1124
BbsI GAAGAC 1 cut(s) 574
Bbv12I GWGCWC 2 cut(s) 354, 823
BbvI GCAGC 2 cut(s) 979, 1007
BccI CCATC 3 cut(s) 203, 497, 584
BciT130I CCWGG 7 cut(s) 15, 47, 204, 762, 847, 1099, 1118
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 2 cut(s) 115, 221
BfaI CTAG 1 cut(s) 665
BfmI CTRYAG 2 cut(s) 231, 993
BfoI RGCGCY 1 cut(s) 971
BfuAI ACCTGC 1 cut(s) 306
BglII AGATCT 1 cut(s) 1027
BisI GCNGC 2 cut(s) 993, 996
BlnI CCTAGG 1 cut(s) 664
BlsI GCNGC 2 cut(s) 994, 997
Bme1390I CCNGG 7 cut(s) 15, 47, 204, 762, 847, 1099, 1118
Bme18I GGWCC 2 cut(s) 17, 1114
BmgT120I GGNCC 3 cut(s) 17, 330, 1114
BmiI GGNNCC 2 cut(s) 969, 1123
BmrFI CCNGG 7 cut(s) 15, 47, 204, 762, 847, 1099, 1118
BmrI ACTGGG 2 cut(s) 85, 1076
BmsI GCATC 4 cut(s) 162, 419, 799, 1086
BmuI ACTGGG 2 cut(s) 85, 1076
BpiI GAAGAC 1 cut(s) 574
BpmI CTGGAG 1 cut(s) 368
Bpu10I CCTNAGC 1 cut(s) 822
BsaHI GRCGYC 1 cut(s) 968
BsaJI CCNNGG 6 cut(s) 46, 664, 761, 794, 1097, 1117
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 6 cut(s) 133, 209, 495, 496, 670, 1047
Bse118I RCCGGY 1 cut(s) 19
Bse1I ACTGG 2 cut(s) 80, 1082
Bse21I CCTNAGG 1 cut(s) 441
BseBI CCWGG 7 cut(s) 15, 47, 204, 762, 847, 1099, 1118
BseDI CCNNGG 6 cut(s) 46, 664, 761, 794, 1097, 1117
BseGI GGATG 5 cut(s) 410, 595, 790, 880, 1077
BseLI CCNNNNNNNGG 6 cut(s) 133, 209, 495, 496, 670, 1047
BseMII CTCAG 4 cut(s) 455, 584, 719, 836
BseNI ACTGG 2 cut(s) 80, 1082
BseXI GCAGC 2 cut(s) 979, 1007
Bsh1236I CGCG 1 cut(s) 983
BshFI GGCC 3 cut(s) 86, 331, 850
BshNI GGYRCC 1 cut(s) 967
BshTI ACCGGT 1 cut(s) 19
BsiHKAI GWGCWC 2 cut(s) 354, 823
BsiSI CCGG 1 cut(s) 20
BslFI GGGAC 2 cut(s) 512, 778
BslI CCNNNNNNNGG 6 cut(s) 133, 209, 495, 496, 670, 1047
BsmAI GTCTC 2 cut(s) 115, 221
BsmFI GGGAC 2 cut(s) 512, 778
BsmI GAATGC 1 cut(s) 99
BsnI GGCC 3 cut(s) 86, 331, 850
Bsp1286I GDGCHC 3 cut(s) 354, 823, 1124
Bsp143I GATC 4 cut(s) 3, 637, 912, 1027
BspACI CCGC 2 cut(s) 64, 552
BspANI GGCC 3 cut(s) 86, 331, 850
BspCNI CTCAG 4 cut(s) 454, 583, 718, 835
BspFNI CGCG 1 cut(s) 983
BspHI TCATGA 3 cut(s) 6, 1014, 1105
BspLI GGNNCC 2 cut(s) 969, 1123
BspMAI CTGCAG 2 cut(s) 235, 997
BspMI ACCTGC 1 cut(s) 306
BspPI GGATC 2 cut(s) 645, 907
BspT107I GGYRCC 1 cut(s) 967
BsrFI RCCGGY 1 cut(s) 19
BsrI ACTGG 2 cut(s) 80, 1082
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 6 cut(s) 46, 664, 761, 794, 1097, 1117
BssMI GATC 4 cut(s) 3, 637, 912, 1027
BssNAI GTATAC 1 cut(s) 381
BssNI GRCGYC 1 cut(s) 968
BssT1I CCWWGG 2 cut(s) 664, 794
Bst1107I GTATAC 1 cut(s) 381
Bst2UI CCWGG 7 cut(s) 15, 47, 204, 762, 847, 1099, 1118
Bst4CI ACNGT 9 cut(s) 128, 244, 269, 378, 460, 475, 609, 694, 769
BstACI GRCGYC 1 cut(s) 968
BstC8I GCNNGC 2 cut(s) 829, 852
BstDEI CTNAG 5 cut(s) 415, 441, 570, 705, 822
BstENI CCTNNNNNAGG 1 cut(s) 668
BstF5I GGATG 5 cut(s) 410, 595, 790, 880, 1077
BstFNI CGCG 1 cut(s) 983
BstH2I RGCGCY 1 cut(s) 971
BstHHI GCGC 3 cut(s) 361, 970, 985
BstKTI GATC 4 cut(s) 6, 640, 915, 1030
BstMAI GTCTC 2 cut(s) 115, 221
BstMBI GATC 4 cut(s) 3, 637, 912, 1027
BstMWI GCNNNNNNNGC 4 cut(s) 349, 358, 989, 1099
BstNI CCWGG 7 cut(s) 15, 47, 204, 762, 847, 1099, 1118
BstNSI RCATGY 1 cut(s) 817
BstSCI CCNGG 7 cut(s) 13, 45, 202, 760, 845, 1097, 1116
BstSFI CTRYAG 2 cut(s) 231, 993
BstUI CGCG 1 cut(s) 983
BstV1I GCAGC 2 cut(s) 979, 1007
BstV2I GAAGAC 1 cut(s) 574
BstX2I RGATCY 1 cut(s) 1027
BstYI RGATCY 1 cut(s) 1027
BstZ17I GTATAC 1 cut(s) 381
Bsu36I CCTNAGG 1 cut(s) 441
BsuRI GGCC 3 cut(s) 86, 331, 850
BtsCI GGATG 5 cut(s) 410, 595, 790, 880, 1077
BtsI GCAGTG 1 cut(s) 1063
BtsIMutI CAGTG 3 cut(s) 265, 480, 1063
BveI ACCTGC 1 cut(s) 306
Cac8I GCNNGC 2 cut(s) 829, 852
CaiI CAGNNNCTG 1 cut(s) 767
CciI TCATGA 3 cut(s) 6, 1014, 1105
CfoI GCGC 3 cut(s) 361, 970, 985
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 3 cut(s) 17, 330, 1114
Csp6I GTAC 2 cut(s) 934, 945
CspAI ACCGGT 1 cut(s) 19
CspCI CAANNNNNGTGG 2 cut(s) 250, 285
CviQI GTAC 2 cut(s) 934, 945
DdeI CTNAG 5 cut(s) 415, 441, 570, 705, 822
DinI GGCGCC 1 cut(s) 969
DpnI GATC 4 cut(s) 5, 639, 914, 1029
DpnII GATC 4 cut(s) 3, 637, 912, 1027
DraI TTTAAA 1 cut(s) 142
Ecl136II GAGCTC 1 cut(s) 352
Eco130I CCWWGG 2 cut(s) 664, 794
Eco24I GRGCYC 2 cut(s) 354, 1124
Eco47I GGWCC 2 cut(s) 17, 1114
Eco53kI GAGCTC 1 cut(s) 352
Eco57I CTGAAG 1 cut(s) 568
Eco81I CCTNAGG 1 cut(s) 441
EcoICRI GAGCTC 1 cut(s) 352
EcoNI CCTNNNNNAGG 1 cut(s) 668
EcoRII CCWGG 7 cut(s) 13, 45, 202, 760, 845, 1097, 1116
EcoT14I CCWWGG 2 cut(s) 664, 794
EcoT38I GRGCYC 2 cut(s) 354, 1124
EgeI GGCGCC 1 cut(s) 969
EheI GGCGCC 1 cut(s) 969
ErhI CCWWGG 2 cut(s) 664, 794
FaqI GGGAC 2 cut(s) 512, 778
FauI CCCGC 1 cut(s) 71
FauNDI CATATG 1 cut(s) 974
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 2 cut(s) 380, 534
Fnu4HI GCNGC 2 cut(s) 993, 996
FokI GGATG 5 cut(s) 397, 602, 777, 887, 1064
FriOI GRGCYC 2 cut(s) 354, 1124
Fsp4HI GCNGC 2 cut(s) 993, 996
FspBI CTAG 1 cut(s) 665
GlaI GCGC 3 cut(s) 360, 969, 984
GluI GCNGC 2 cut(s) 993, 996
GsuI CTGGAG 1 cut(s) 368
HaeII RGCGCY 1 cut(s) 971
HaeIII GGCC 3 cut(s) 86, 331, 850
HapII CCGG 1 cut(s) 20
HhaI GCGC 3 cut(s) 361, 970, 985
Hin1I GRCGYC 1 cut(s) 968
Hin6I GCGC 3 cut(s) 359, 968, 983
HinP1I GCGC 3 cut(s) 359, 968, 983
HincII GTYRAC 2 cut(s) 535, 775
HindII GTYRAC 2 cut(s) 535, 775
HinfI GANTC 3 cut(s) 10, 602, 712
HpaII CCGG 1 cut(s) 20
HphI GGTGA 2 cut(s) 218, 250
Hpy166II GTNNAC 7 cut(s) 381, 535, 557, 563, 690, 775, 934
Hpy188I TCNGA 5 cut(s) 36, 573, 708, 1036, 1072
Hpy188III TCNNGA 7 cut(s) 7, 347, 443, 622, 1015, 1088, 1106
Hpy8I GTNNAC 7 cut(s) 381, 535, 557, 563, 690, 775, 934
HpyAV CCTTC 3 cut(s) 215, 1045, 1105
HpyCH4III ACNGT 9 cut(s) 128, 244, 269, 378, 460, 475, 609, 694, 769
HpyCH4IV ACGT 1 cut(s) 559
HpyF10VI GCNNNNNNNGC 4 cut(s) 349, 358, 989, 1099
HpyF3I CTNAG 5 cut(s) 415, 441, 570, 705, 822
HpySE526I ACGT 1 cut(s) 559
Hsp92I GRCGYC 1 cut(s) 968
HspAI GCGC 3 cut(s) 359, 968, 983
KasI GGCGCC 1 cut(s) 967
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 637, 912, 1027
LmnI GCTCC 2 cut(s) 349, 1127
Lsp1109I GCAGC 2 cut(s) 979, 1007
LweI GCATC 4 cut(s) 162, 419, 799, 1086
MaeI CTAG 1 cut(s) 665
MaeII ACGT 1 cut(s) 559
MaeIII GTNAC 6 cut(s) 128, 238, 369, 460, 469, 1060
MalI GATC 4 cut(s) 5, 639, 914, 1029
MboI GATC 4 cut(s) 3, 637, 912, 1027
MboII GAAGA 5 cut(s) 387, 574, 721, 1037, 1123
MflI RGATCY 1 cut(s) 1027
MhlI GDGCHC 3 cut(s) 354, 823, 1124
MluCI AATT 4 cut(s) 137, 739, 783, 799
Mly113I GGCGCC 1 cut(s) 968
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 8 cut(s) 102, 229, 354, 399, 450, 471, 664, 1051
MseI TTAA 5 cut(s) 114, 141, 197, 494, 612
MslI CAYNNNNRTG 1 cut(s) 861
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 7 cut(s) 15, 47, 204, 762, 847, 1099, 1118
Mva1269I GAATGC 1 cut(s) 99
MvaI CCWGG 7 cut(s) 15, 47, 204, 762, 847, 1099, 1118
MvnI CGCG 1 cut(s) 983
MwoI GCNNNNNNNGC 4 cut(s) 349, 358, 989, 1099
NarI GGCGCC 1 cut(s) 968
NdeI CATATG 1 cut(s) 974
NdeII GATC 4 cut(s) 3, 637, 912, 1027
NlaIV GGNNCC 2 cut(s) 969, 1123
NmuCI GTSAC 2 cut(s) 460, 1060
NspI RCATGY 1 cut(s) 817
PagI TCATGA 3 cut(s) 6, 1014, 1105
PciI ACATGT 1 cut(s) 813
PctI GAATGC 1 cut(s) 99
PfeI GAWTC 2 cut(s) 602, 712
PfoI TCCNGGA 1 cut(s) 13
PinAI ACCGGT 1 cut(s) 19
PkrI GCNGC 2 cut(s) 994, 997
PleI GAGTC 1 cut(s) 4
PluTI GGCGCC 1 cut(s) 971
PpsI GAGTC 1 cut(s) 4
PscI ACATGT 1 cut(s) 813
Psp124BI GAGCTC 1 cut(s) 354
Psp6I CCWGG 7 cut(s) 13, 45, 202, 760, 845, 1097, 1116
PspGI CCWGG 7 cut(s) 13, 45, 202, 760, 845, 1097, 1116
PspN4I GGNNCC 2 cut(s) 969, 1123
PspPI GGNCC 3 cut(s) 17, 330, 1114
PstI CTGCAG 2 cut(s) 235, 997
PstNI CAGNNNCTG 1 cut(s) 767
PsuI RGATCY 1 cut(s) 1027
RsaI GTAC 2 cut(s) 935, 946
RsaNI GTAC 2 cut(s) 934, 945
RseI CAYNNNNRTG 1 cut(s) 861
SacI GAGCTC 1 cut(s) 354
SalI GTCGAC 1 cut(s) 533
SaqAI TTAA 5 cut(s) 114, 141, 197, 494, 612
SatI GCNGC 2 cut(s) 993, 996
Sau3AI GATC 4 cut(s) 3, 637, 912, 1027
Sau96I GGNCC 3 cut(s) 17, 330, 1114
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 7 cut(s) 15, 47, 204, 762, 847, 1099, 1118
SduI GDGCHC 3 cut(s) 354, 823, 1124
SfaNI GCATC 4 cut(s) 162, 419, 799, 1086
SfcI CTRYAG 2 cut(s) 231, 993
SfoI GGCGCC 1 cut(s) 969
SinI GGWCC 2 cut(s) 17, 1114
SmiMI CAYNNNNRTG 1 cut(s) 861
Sse9I AATT 4 cut(s) 137, 739, 783, 799
SsiI CCGC 2 cut(s) 64, 552
SspDI GGCGCC 1 cut(s) 967
SspI AATATT 1 cut(s) 679
SspMI CTAG 1 cut(s) 665
SstI GAGCTC 1 cut(s) 354
StyD4I CCNGG 7 cut(s) 13, 45, 202, 760, 845, 1097, 1116
StyI CCWWGG 2 cut(s) 664, 794
TaaI ACNGT 9 cut(s) 128, 244, 269, 378, 460, 475, 609, 694, 769
TaiI ACGT 1 cut(s) 562
TaqI TCGA 1 cut(s) 534
TasI AATT 4 cut(s) 137, 739, 783, 799
TatI WGTACW 1 cut(s) 944
TfiI GAWTC 2 cut(s) 602, 712
Tru1I TTAA 5 cut(s) 114, 141, 197, 494, 612
Tru9I TTAA 5 cut(s) 114, 141, 197, 494, 612
TscAI CASTG 3 cut(s) 272, 480, 1063
TseFI GTSAC 2 cut(s) 460, 1060
TseI GCWGC 2 cut(s) 992, 995
Tsp45I GTSAC 2 cut(s) 460, 1060
TspDTI ATGAA 5 cut(s) 206, 1003, 1031, 1056, 1094
TspRI CASTG 3 cut(s) 272, 480, 1063
VpaK11BI GGWCC 2 cut(s) 17, 1114
XagI CCTNNNNNAGG 1 cut(s) 668
XapI RAATTY 1 cut(s) 137
XceI RCATGY 1 cut(s) 817
XmaJI CCTAGG 1 cut(s) 664
XmiI GTMKAC 2 cut(s) 380, 534
XspI CTAG 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.