Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000742

Physical Location & Seq

Genomic Coordinates Reverse (-)

27957504 .. 27959031

Gene Structure 1528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g37878.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGAATTCATCAAGTGTAATGAATATCTCAAAGCACCACAAAAAGGTGATTCGTGATGAATATGAAGTTGAAACTGGTAATGGAAGAATTAATCGGAAAACAAGAACCACAGTCATGTTTGAGGATCCAAGAAAACATATGAGGACAACTACCCCAAAAGTCAAAAGCCCCAGGGGTGTAGTCAAGGGATCTAAGGGAGAGGGTCAACCACGTGCTTCAAACATAGGTGACTTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

80

Amino Acids

8.94

Weight (kDa)

10.53

Isoelectric Point (pI)

23.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22260 AT1G22260 AT1G22260 AT1G22275 AT1G22275 AT1G22275
fragaria_vesca	FvH4_5g32650 FvH4_5g32780 FvH4_5g37341 FvH4_5g37341 FvH4_5g37341 FvH4_5g37878 FvH4_5g39260 FvH4_5g39261 FvH4_6g40021
malus_domestica	MD15G1368600.v1.1
prunus_persica	Prupe.1G516800_v2.0.a1
pyrus_communis	pycom15g33040
rosa_chinensis	RchiOBHm_Chr0c28g0500891 RchiOBHm_Chr0c28g0500941 RchiOBHm_Chr0c28g0500951 RchiOBHm_Chr0c28g0501001 RchiOBHm_Chr0c28g0501031 RchiOBHm_Chr0c28g0501041 RchiOBHm_Chr2g0168611 RchiOBHm_Chr7g0227211 RchiOBHm_Chr7g0239001 RchiOBHm_Chr7g0240441 RchiOBHm_Chr7g0243501 RchiOBHm_Chr7g0243551 RchiOBHm_Chr7g0243591 RchiOBHm_Chr7g0243601 RchiOBHm_Chr7g0243631
rosa_laevigata	RLG00000000697 RLG00000000791 RLG00000001655 RLG00000012649 RLG00000029503 RLG00000029517
rosa_multiflora	Rmu_sc0000477.1_g000005 Rmu_sc0000808.1_g000048 Rmu_sc0001157.1_g000007 Rmu_sc0003467.1_g000028 Rmu_sc0004062.1_g000005 Rmu_sc0004062.1_g000012 Rmu_sc0004132.1_g000002 Rmu_sc0007030.1_g000007 Rmu_sc0007424.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220080 Rroxscaffold_3G00221390 Rroxscaffold_3G00222050 Rroxscaffold_3G00222080
rosa_rugosa	Rorug04G0112400 Rorug04G0112500 Rorug04G0112500 Rorug05G0574800 Rorug07G0324400 Rorug07G0324800
rosa_samantha	Rh2CG397000 Rh5BG532300 Rh5BG532500 Rh5CG411900 Rh5CG556200 Rh7BG420900 Rh7BG452000 Rh7CG496600 Rh7CG496800 Rh7DG464100
rosa_wichuraiana	Rw2G046820 Rw5G047300 Rw7G039610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	119, 132, 196
AcsI	RAATTY	1 cut(s)	4
AcvI	CACGTG	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	2 cut(s)	71, 219
AjnI	CCWGG	1 cut(s)	170
AlwI	GGATC	3 cut(s)	119, 132, 196
ApoI	RAATTY	1 cut(s)	4
AseI	ATTAAT	1 cut(s)	90
AsuHPI	GGTGA	2 cut(s)	58, 239
BamHI	GGATCC	1 cut(s)	124
BbrPI	CACGTG	1 cut(s)	212
BciT130I	CCWGG	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	172
BsaAI	YACGTR	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	170, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	2 cut(s)	170, 171
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	124, 188
BspLI	GGNNCC	1 cut(s)	126
BspPI	GGATC	3 cut(s)	119, 132, 196
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	2 cut(s)	170, 171
BssMI	GATC	2 cut(s)	124, 188
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	112
BstBAI	YACGTR	1 cut(s)	212
BstDEI	CTNAG	1 cut(s)	192
BstKTI	GATC	2 cut(s)	127, 191
BstMBI	GATC	2 cut(s)	124, 188
BstNI	CCWGG	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	170
BstX2I	RGATCY	2 cut(s)	124, 188
BstYI	RGATCY	2 cut(s)	124, 188
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	1 cut(s)	168
CviKI_1	RGCY	1 cut(s)	168
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	2 cut(s)	126, 190
DpnII	GATC	2 cut(s)	124, 188
Eco72I	CACGTG	1 cut(s)	212
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	170
FaeI	CATG	1 cut(s)	118
FaiI	YATR	5 cut(s)	63, 116, 138, 140, 224
FatI	CATG	1 cut(s)	114
FauNDI	CATATG	1 cut(s)	138
Hin1II	CATG	1 cut(s)	118
HincII	GTYRAC	1 cut(s)	206
HindII	GTYRAC	1 cut(s)	206
HinfI	GANTC	1 cut(s)	49
HphI	GGTGA	2 cut(s)	58, 239
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	1 cut(s)	206
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	211
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	124, 188
LpnPI	CCDG	3 cut(s)	60, 157, 184
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	2 cut(s)	126, 190
MboI	GATC	2 cut(s)	124, 188
MboII	GAAGA	1 cut(s)	96
MflI	RGATCY	2 cut(s)	124, 188
MluCI	AATT	2 cut(s)	4, 87
MnlI	CCTC	3 cut(s)	115, 135, 193
MseI	TTAA	1 cut(s)	90
MslI	CAYNNNNRTG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	172
NdeI	CATATG	1 cut(s)	138
NdeII	GATC	2 cut(s)	124, 188
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	1 cut(s)	126
NmuCI	GTSAC	1 cut(s)	227
PasI	CCCWGGG	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	49
PmaCI	CACGTG	1 cut(s)	212
PmlI	CACGTG	1 cut(s)	212
Ppu21I	YACGTR	1 cut(s)	212
PshBI	ATTAAT	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	170
PspCI	CACGTG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	126
PsuI	RGATCY	2 cut(s)	124, 188
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	90
Sau3AI	GATC	2 cut(s)	124, 188
ScrFI	CCNGG	1 cut(s)	172
SetI	ASST	3 cut(s)	48, 214, 229
SmiMI	CAYNNNNRTG	1 cut(s)	113
Sse9I	AATT	2 cut(s)	4, 87
StyD4I	CCNGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	1 cut(s)	214
TasI	AATT	2 cut(s)	4, 87
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	227
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	4 cut(s)	17, 35, 72, 78
VspI	ATTAAT	1 cut(s)	90
XapI	RAATTY	1 cut(s)	4

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.