Rorug04G0112500
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000636
Physical Location & Seq
Forward (+)
17719661 .. 17727433
7773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0112500.1

Sequence Viewer

Length: 567 bp
ATGGCATCAGAAAACCTTCAATGTCTTAAGAAATATATCGGTCCGTTATTGTGTTTGCATGTAGTTCTTTTGTCAAGTTTGTGTGGGATTGCTACCTCACAAACCATAGTCACCAGTTTACCTGGTTTTGAAGGGGACCTGCCATTCACACTAGAAACTGGGTATGTGGGTGTGGGTGACTCAAACTCCTCCCAATTGTTCTACTATTTTGTTGAGTCGACCAGAAGCCCTTCTGAAGACCCTGTTATGATTTGGTTAACTGGAGGCCCTGGCTGCTCTGTTCTCTCTGCCTTCTTTCTTGAAAGTGGTCCACTATCTTTCACATATGTAGATTACAATGGAAGTTTACCCTCACTTCATGTCAACCCATATGCATGGACACAGGGCCTCAACATAATATATGTAGATTCACCTGTTGGCACCGGATTCTCTTATTCTACAACGCAAGAAGGTTACTATATAGATGACGAAGGTGCCGTGGACCAGATTGTTGAGTTTCTGAGGAAGTTTGAAGATATGAGTGAACCATTAGCAGGACGGCGAGCAGCGGGTAGGCCTAGTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

188

Amino Acids

20.42

Weight (kDa)

4.28

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 41 - 172 3.7e-45 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 147
AccB1I GGYRCC 2 cut(s) 419, 473
AccI GTMKAC 1 cut(s) 218
AciI CCGC 1 cut(s) 548
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 1 cut(s) 562
AfiI CCNNNNNNNGG 1 cut(s) 533
AflII CTTAAG 1 cut(s) 26
AgsI TTSAA 4 cut(s) 20, 131, 302, 512
AjnI CCWGG 2 cut(s) 121, 268
AoxI GGCC 3 cut(s) 265, 385, 554
ApeKI GCWGC 2 cut(s) 273, 545
Asp700I GAANNNNTTC 2 cut(s) 15, 229
AspS9I GGNCC 6 cut(s) 41, 136, 266, 308, 385, 481
AsuHPI GGTGA 3 cut(s) 103, 188, 402
AvaII GGWCC 4 cut(s) 41, 136, 308, 481
BanI GGYRCC 2 cut(s) 419, 473
BbsI GAAGAC 1 cut(s) 243
BbvI GCAGC 2 cut(s) 260, 557
BceAI ACGGC 2 cut(s) 461, 554
BciT130I CCWGG 2 cut(s) 123, 270
BfaI CTAG 2 cut(s) 152, 558
BfrI CTTAAG 1 cut(s) 26
BfuAI ACCTGC 1 cut(s) 147
BisI GCNGC 2 cut(s) 274, 546
BlsI GCNGC 2 cut(s) 275, 547
Bme1390I CCNGG 2 cut(s) 123, 270
Bme18I GGWCC 4 cut(s) 41, 136, 308, 481
BmgT120I GGNCC 6 cut(s) 41, 136, 266, 308, 385, 481
BmiI GGNNCC 3 cut(s) 137, 421, 475
BmrFI CCNGG 2 cut(s) 123, 270
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 14
BmuI ACTGGG 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 243
BpmI CTGGAG 1 cut(s) 282
BsaAI YACGTR 1 cut(s) 564
BsaJI CCNNGG 2 cut(s) 268, 477
BsaWI WCCGGW 1 cut(s) 422
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 533
Bse1I ACTGG 3 cut(s) 114, 163, 265
BseBI CCWGG 2 cut(s) 123, 270
BseDI CCNNGG 2 cut(s) 268, 477
BseLI CCNNNNNNNGG 1 cut(s) 533
BseMII CTCAG 1 cut(s) 491
BseNI ACTGG 3 cut(s) 114, 163, 265
BseRI GAGGAG 1 cut(s) 178
BseXI GCAGC 2 cut(s) 260, 557
BshFI GGCC 3 cut(s) 267, 387, 556
BshNI GGYRCC 2 cut(s) 419, 473
BsiSI CCGG 1 cut(s) 423
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 533
BsmFI GGGAC 1 cut(s) 149
BsnI GGCC 3 cut(s) 267, 387, 556
BspACI CCGC 1 cut(s) 548
BspANI GGCC 3 cut(s) 267, 387, 556
BspCNI CTCAG 1 cut(s) 492
BspLI GGNNCC 3 cut(s) 137, 421, 475
BspMI ACCTGC 1 cut(s) 147
BspT107I GGYRCC 2 cut(s) 419, 473
BspTI CTTAAG 1 cut(s) 26
BsrI ACTGG 3 cut(s) 114, 163, 265
BssECI CCNNGG 2 cut(s) 268, 477
Bst2UI CCWGG 2 cut(s) 123, 270
BstAFI CTTAAG 1 cut(s) 26
BstBAI YACGTR 1 cut(s) 564
BstC8I GCNNGC 1 cut(s) 543
BstDEI CTNAG 1 cut(s) 500
BstDSI CCRYGG 1 cut(s) 477
BstMWI GCNNNNNNNGC 1 cut(s) 273
BstNI CCWGG 2 cut(s) 123, 270
BstNSI RCATGY 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 121, 268
BstV1I GCAGC 2 cut(s) 260, 557
BstV2I GAAGAC 1 cut(s) 243
BstXI CCANNNNNNTGG 1 cut(s) 375
BsuRI GGCC 3 cut(s) 267, 387, 556
BtgI CCRYGG 1 cut(s) 477
BveI ACCTGC 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 543
Cfr13I GGNCC 6 cut(s) 41, 136, 266, 308, 385, 481
CpoI CGGWCCG 1 cut(s) 41
CsiI ACCWGGT 1 cut(s) 121
Csp6I GTAC 1 cut(s) 561
CspI CGGWCCG 1 cut(s) 41
CviAII CATG 3 cut(s) 59, 359, 375
CviJI RGCY 5 cut(s) 228, 267, 273, 387, 556
CviKI_1 RGCY 5 cut(s) 228, 267, 273, 387, 556
CviQI GTAC 1 cut(s) 561
DdeI CTNAG 1 cut(s) 500
Eco147I AGGCCT 1 cut(s) 556
Eco47I GGWCC 4 cut(s) 41, 136, 308, 481
Eco57I CTGAAG 1 cut(s) 255
EcoO109I RGGNCCY 3 cut(s) 136, 266, 385
EcoRII CCWGG 2 cut(s) 121, 268
EcoT22I ATGCAT 1 cut(s) 376
FaeI CATG 3 cut(s) 62, 362, 378
FaqI GGGAC 1 cut(s) 149
FatI CATG 3 cut(s) 58, 358, 374
FauI CCCGC 1 cut(s) 541
FauNDI CATATG 2 cut(s) 325, 370
FblI GTMKAC 1 cut(s) 218
Fnu4HI GCNGC 2 cut(s) 274, 546
Fsp4HI GCNGC 2 cut(s) 274, 546
FspBI CTAG 2 cut(s) 152, 558
GluI GCNGC 2 cut(s) 274, 546
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 3 cut(s) 267, 387, 556
HapII CCGG 1 cut(s) 423
Hin1II CATG 3 cut(s) 62, 362, 378
HincII GTYRAC 3 cut(s) 219, 258, 364
HindII GTYRAC 3 cut(s) 219, 258, 364
HinfI GANTC 4 cut(s) 179, 215, 407, 426
HpaI GTTAAC 1 cut(s) 258
HpaII CCGG 1 cut(s) 423
HphI GGTGA 3 cut(s) 103, 188, 402
Hpy166II GTNNAC 8 cut(s) 119, 219, 258, 311, 347, 364, 481, 524
Hpy188I TCNGA 3 cut(s) 10, 235, 501
Hpy188III TCNNGA 1 cut(s) 299
Hpy8I GTNNAC 8 cut(s) 119, 219, 258, 311, 347, 364, 481, 524
HpyAV CCTTC 6 cut(s) 26, 125, 240, 301, 443, 464
HpyCH4IV ACGT 1 cut(s) 563
HpyCH4V TGCA 2 cut(s) 58, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 273
HpyF3I CTNAG 1 cut(s) 500
HpySE526I ACGT 1 cut(s) 563
Hsp92II CATG 3 cut(s) 62, 362, 378
KspAI GTTAAC 1 cut(s) 258
Lsp1109I GCAGC 2 cut(s) 260, 557
LweI GCATC 1 cut(s) 14
MabI ACCWGGT 1 cut(s) 121
MaeI CTAG 2 cut(s) 152, 558
MaeII ACGT 1 cut(s) 563
MaeIII GTNAC 3 cut(s) 109, 176, 452
MboII GAAGA 2 cut(s) 248, 524
MfeI CAATTG 1 cut(s) 194
MluCI AATT 1 cut(s) 194
MlyI GAGTC 2 cut(s) 173, 224
MnlI CCTC 6 cut(s) 106, 199, 257, 361, 398, 495
Mph1103I ATGCAT 1 cut(s) 376
MroXI GAANNNNTTC 2 cut(s) 15, 229
MseI TTAA 2 cut(s) 27, 257
MslI CAYNNNNRTG 1 cut(s) 373
MspA1I CMGCKG 1 cut(s) 548
MspCI CTTAAG 1 cut(s) 26
MspI CCGG 1 cut(s) 423
MspR9I CCNGG 2 cut(s) 123, 270
MunI CAATTG 1 cut(s) 194
MvaI CCWGG 2 cut(s) 123, 270
MwoI GCNNNNNNNGC 1 cut(s) 273
NdeI CATATG 2 cut(s) 325, 370
NlaIII CATG 3 cut(s) 62, 362, 378
NlaIV GGNNCC 3 cut(s) 137, 421, 475
NmuCI GTSAC 2 cut(s) 109, 176
NsiI ATGCAT 1 cut(s) 376
NspI RCATGY 1 cut(s) 62
PceI AGGCCT 1 cut(s) 556
PcsI WCGNNNNNNNCGW 1 cut(s) 474
PdmI GAANNNNTTC 2 cut(s) 15, 229
PfeI GAWTC 2 cut(s) 407, 426
PkrI GCNGC 2 cut(s) 275, 547
PleI GAGTC 2 cut(s) 173, 223
PpsI GAGTC 2 cut(s) 173, 223
Ppu21I YACGTR 1 cut(s) 564
PpuMI RGGWCCY 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 136
Psp6I CCWGG 2 cut(s) 121, 268
PspGI CCWGG 2 cut(s) 121, 268
PspN4I GGNNCC 3 cut(s) 137, 421, 475
PspPI GGNCC 6 cut(s) 41, 136, 266, 308, 385, 481
PspPPI RGGWCCY 1 cut(s) 136
RsaI GTAC 1 cut(s) 562
RsaNI GTAC 1 cut(s) 561
RseI CAYNNNNRTG 1 cut(s) 373
Rsr2I CGGWCCG 1 cut(s) 41
RsrII CGGWCCG 1 cut(s) 41
SalI GTCGAC 1 cut(s) 217
SaqAI TTAA 2 cut(s) 27, 257
SatI GCNGC 2 cut(s) 274, 546
Sau96I GGNCC 6 cut(s) 41, 136, 266, 308, 385, 481
SchI GAGTC 2 cut(s) 173, 224
ScrFI CCNGG 2 cut(s) 123, 270
SetI ASST 8 cut(s) 18, 98, 124, 141, 415, 454, 475, 566
SexAI ACCWGGT 1 cut(s) 121
SfaNI GCATC 1 cut(s) 14
SinI GGWCC 4 cut(s) 41, 136, 308, 481
SmiMI CAYNNNNRTG 1 cut(s) 373
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 1 cut(s) 194
SseBI AGGCCT 1 cut(s) 556
SsiI CCGC 1 cut(s) 548
SspMI CTAG 2 cut(s) 152, 558
StuI AGGCCT 1 cut(s) 556
StyD4I CCNGG 2 cut(s) 121, 268
TaiI ACGT 1 cut(s) 566
TaqI TCGA 1 cut(s) 218
TaqII GACCGA 1 cut(s) 29
TasI AATT 1 cut(s) 194
TfiI GAWTC 2 cut(s) 407, 426
Tru1I TTAA 2 cut(s) 27, 257
Tru9I TTAA 2 cut(s) 27, 257
TseFI GTSAC 2 cut(s) 109, 176
TseI GCWGC 2 cut(s) 273, 545
Tsp45I GTSAC 2 cut(s) 109, 176
TspDTI ATGAA 1 cut(s) 347
TspGWI ACGGA 1 cut(s) 33
Vha464I CTTAAG 1 cut(s) 26
VpaK11BI GGWCC 4 cut(s) 41, 136, 308, 481
XceI RCATGY 1 cut(s) 62
XmiI GTMKAC 1 cut(s) 218
XmnI GAANNNNTTC 2 cut(s) 15, 229
XspI CTAG 2 cut(s) 152, 558
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.