Rroxscaffold_3G00222090
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000636
Physical Location & Seq
Reverse (-)
5090172 .. 5091211
1040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00222090.1

Sequence Viewer

Length: 948 bp
ATGGCACCACAGGTTTACCACCATGGGATATATGGAGAATTTATGAGCCTTCCAAATTTCCACATCAAGATTATATCTATTTCTTCTCCCAGTGTCAAGAAGTTGGGTTCCCGCTGTTCTCGCAGAATTGGCTGCGATGGGGGCACATGGAGCGAGACCGAAGCTGCTAAACCTGTCTATGTCAGTGGAATTGAAGAGCCTTATGGAAAACTAAGGAAGTTTCGATACGAGAACAACAAGGACAAAGGCTTTGAACACCATGCTGCTTGGTTGATGGATGAGTTCACCATCAACCAAGCACCAGATCTGGCTTTGTGCCGACTCAAAGTCAATGATAAAGGAGGAGGAAGAAAAAGAGGAAGAAGAGTTCTGATGAGACTAAAGAGGACCAGAATTGCTTCCTTTGCTACTACTACTTCACAGCTAATTCTCTCTCCCTATCATCATGAAGATGATCAAGTGGTTCAGGTGGTTCCGGAGAACAATTACGATTATGACGAGCTGCAGCAGATCCTCTTTAGTGATGATGATTGTATGGATGAGAATCTAATGTTCTCTCCCACTATCTTGTTTGATGATGCTCAGCTTATGGCTTCTGTTGATCAATCAATAGCTATTGAGCAACAACAAGAGCAACAACAACAACAAGATTCGGATTATTCACTTGCGCCGCAACAGCAATTGGAACCTGACAATAGGTGTCAAGAGGAGGACCAAATACAACTACAACAACAAGATCAGCCCTCTTCCTCTCATTCTCACGAGCAGCAGCAGCTCATCGGTGATGACGATCTGATGATTTATGGCCAACATGACTATAATATTCCACTCGATAACGACTTCTTATGGTCAGATGAATTTAATGGACTCTTTACTCATGAAGATCAGCTGGGAGCTGTGCCATGGCGGGATAGTGATGATCAGTTTCAGTATTCTGACATCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

315

Amino Acids

36.39

Weight (kDa)

4.61

Isoelectric Point (pI)

60.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccIII TCCGGA 1 cut(s) 475
AciI CCGC 3 cut(s) 112, 671, 907
AclWI GGATC 1 cut(s) 505
AcoI YGGCCR 1 cut(s) 805
AcsI RAATTY 3 cut(s) 38, 55, 857
AgsI TTSAA 2 cut(s) 194, 254
AhdI GACNNNNNGTC 1 cut(s) 326
AloI GAACNNNNNNTCC 2 cut(s) 351, 383
AluBI AGCT 8 cut(s) 164, 424, 502, 586, 614, 775, 889, 896
AluI AGCT 8 cut(s) 164, 424, 502, 586, 614, 775, 889, 896
Alw26I GTCTC 2 cut(s) 149, 370
AlwI GGATC 1 cut(s) 505
Aor13HI TCCGGA 1 cut(s) 475
AoxI GGCC 1 cut(s) 805
ApeKI GCWGC 8 cut(s) 132, 164, 263, 502, 505, 766, 769, 772
ApoI RAATTY 3 cut(s) 38, 55, 857
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
Asp700I GAANNNNTTC 1 cut(s) 397
AspLEI GCGC 1 cut(s) 670
AspS9I GGNCC 2 cut(s) 387, 712
AsuHPI GGTGA 2 cut(s) 277, 794
AvaII GGWCC 2 cut(s) 387, 712
BaeGI GKGCMC 1 cut(s) 146
BalI TGGCCA 1 cut(s) 807
BanI GGYRCC 1 cut(s) 4
BarI GAAGNNNNNNTAC 2 cut(s) 209, 241
BauI CACGAG 1 cut(s) 761
BbvI GCAGC 8 cut(s) 119, 151, 250, 489, 517, 778, 781, 784
BccI CCATC 3 cut(s) 131, 268, 296
BclI TGATCA 3 cut(s) 454, 601, 919
BcoDI GTCTC 2 cut(s) 149, 370
BfmI CTRYAG 1 cut(s) 503
BglII AGATCT 1 cut(s) 304
BisI GCNGC 9 cut(s) 133, 165, 264, 503, 506, 671, 767, 770, 773
BlpI GCTNAGC 1 cut(s) 582
BlsI GCNGC 9 cut(s) 134, 166, 265, 504, 507, 672, 768, 771, 774
Bme18I GGWCC 2 cut(s) 387, 712
BmeRI GACNNNNNGTC 1 cut(s) 326
BmgT120I GGNCC 2 cut(s) 387, 712
BmiI GGNNCC 4 cut(s) 6, 109, 474, 687
BmrI ACTGGG 1 cut(s) 84
BmsI GCATC 1 cut(s) 568
BmuI ACTGGG 1 cut(s) 84
Bpu1102I GCTNAGC 1 cut(s) 582
BsaBI GATNNNNATC 2 cut(s) 543, 789
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 22, 902
BsaWI WCCGGW 1 cut(s) 475
Bse1I ACTGG 1 cut(s) 90
Bse8I GATNNNNATC 2 cut(s) 543, 789
BseAI TCCGGA 1 cut(s) 475
BseDI CCNNGG 2 cut(s) 22, 902
BseGI GGATG 2 cut(s) 283, 544
BseJI GATNNNNATC 2 cut(s) 543, 789
BseMII CTCAG 1 cut(s) 596
BseNI ACTGG 1 cut(s) 90
BseRI GAGGAG 2 cut(s) 357, 722
BseSI GKGCMC 1 cut(s) 146
BseXI GCAGC 8 cut(s) 119, 151, 250, 489, 517, 778, 781, 784
BseYI CCCAGC 1 cut(s) 889
BshFI GGCC 1 cut(s) 807
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 1 cut(s) 476
BsmAI GTCTC 2 cut(s) 149, 370
BsnI GGCC 1 cut(s) 807
Bso31I GGTCTC 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 146
Bsp13I TCCGGA 1 cut(s) 475
Bsp143I GATC 8 cut(s) 304, 454, 510, 601, 736, 790, 883, 919
Bsp1720I GCTNAGC 1 cut(s) 582
Bsp19I CCATGG 2 cut(s) 22, 902
BspACI CCGC 3 cut(s) 112, 671, 907
BspANI GGCC 1 cut(s) 807
BspCNI CTCAG 1 cut(s) 595
BspEI TCCGGA 1 cut(s) 475
BspHI TCATGA 2 cut(s) 445, 877
BspLI GGNNCC 4 cut(s) 6, 109, 474, 687
BspMAI CTGCAG 1 cut(s) 507
BspPI GGATC 1 cut(s) 505
BspQI GCTCTTC 1 cut(s) 189
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 90
BssECI CCNNGG 2 cut(s) 22, 902
BssMI GATC 8 cut(s) 304, 454, 510, 601, 736, 790, 883, 919
BssSI CACGAG 1 cut(s) 761
BssT1I CCWWGG 2 cut(s) 22, 902
Bst2BI CACGAG 1 cut(s) 761
Bst6I CTCTTC 3 cut(s) 189, 358, 751
BstDEI CTNAG 2 cut(s) 212, 582
BstDSI CCRYGG 2 cut(s) 22, 902
BstF5I GGATG 2 cut(s) 283, 544
BstHHI GCGC 1 cut(s) 670
BstKTI GATC 8 cut(s) 307, 457, 513, 604, 739, 793, 886, 922
BstMAI GTCTC 2 cut(s) 149, 370
BstMBI GATC 8 cut(s) 304, 454, 510, 601, 736, 790, 883, 919
BstMWI GCNNNNNNNGC 7 cut(s) 120, 129, 141, 150, 404, 676, 772
BstSFI CTRYAG 1 cut(s) 503
BstSLI GKGCMC 1 cut(s) 146
BstV1I GCAGC 8 cut(s) 119, 151, 250, 489, 517, 778, 781, 784
BstX2I RGATCY 2 cut(s) 304, 510
BstYI RGATCY 2 cut(s) 304, 510
BsuRI GGCC 1 cut(s) 807
BtgI CCRYGG 2 cut(s) 22, 902
BtgZI GCGATG 1 cut(s) 150
BtsCI GGATG 2 cut(s) 283, 544
BtsIMutI CAGTG 2 cut(s) 97, 190
CciI TCATGA 2 cut(s) 445, 877
CfoI GCGC 1 cut(s) 670
Cfr13I GGNCC 2 cut(s) 387, 712
CviAII CATG 7 cut(s) 23, 147, 260, 446, 812, 878, 903
DdeI CTNAG 2 cut(s) 212, 582
DpnI GATC 8 cut(s) 306, 456, 512, 603, 738, 792, 885, 921
DpnII GATC 8 cut(s) 304, 454, 510, 601, 736, 790, 883, 919
DriI GACNNNNNGTC 1 cut(s) 326
EaeI YGGCCR 1 cut(s) 805
Eam1104I CTCTTC 3 cut(s) 189, 358, 751
Eam1105I GACNNNNNGTC 1 cut(s) 326
EarI CTCTTC 3 cut(s) 189, 358, 751
Eco130I CCWWGG 2 cut(s) 22, 902
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 2 cut(s) 387, 712
EcoT14I CCWWGG 2 cut(s) 22, 902
ErhI CCWWGG 2 cut(s) 22, 902
FaeI CATG 7 cut(s) 26, 150, 263, 449, 815, 881, 906
FatI CATG 7 cut(s) 22, 146, 259, 445, 811, 877, 902
FauI CCCGC 2 cut(s) 119, 900
FbaI TGATCA 3 cut(s) 454, 601, 919
Fnu4HI GCNGC 9 cut(s) 133, 165, 264, 503, 506, 671, 767, 770, 773
FokI GGATG 2 cut(s) 290, 551
Fsp4HI GCNGC 9 cut(s) 133, 165, 264, 503, 506, 671, 767, 770, 773
GlaI GCGC 1 cut(s) 669
GluI GCNGC 9 cut(s) 133, 165, 264, 503, 506, 671, 767, 770, 773
GsaI CCCAGC 1 cut(s) 893
HaeIII GGCC 1 cut(s) 807
HapII CCGG 1 cut(s) 476
HhaI GCGC 1 cut(s) 670
Hin1II CATG 7 cut(s) 26, 150, 263, 449, 815, 881, 906
Hin6I GCGC 1 cut(s) 668
HinP1I GCGC 1 cut(s) 668
HinfI GANTC 4 cut(s) 321, 544, 650, 867
HpaII CCGG 1 cut(s) 476
HphI GGTGA 2 cut(s) 277, 794
Hpy166II GTNNAC 2 cut(s) 16, 285
Hpy188I TCNGA 5 cut(s) 372, 655, 795, 853, 937
Hpy188III TCNNGA 7 cut(s) 67, 97, 446, 476, 704, 761, 878
Hpy8I GTNNAC 2 cut(s) 16, 285
HpyAV CCTTC 1 cut(s) 59
HpyCH4V TGCA 1 cut(s) 505
HpyF10VI GCNNNNNNNGC 7 cut(s) 120, 129, 141, 150, 404, 676, 772
HpyF3I CTNAG 2 cut(s) 212, 582
Hsp92II CATG 7 cut(s) 26, 150, 263, 449, 815, 881, 906
HspAI GCGC 1 cut(s) 668
Kpn2I TCCGGA 1 cut(s) 475
Ksp22I TGATCA 3 cut(s) 454, 601, 919
Kzo9I GATC 8 cut(s) 304, 454, 510, 601, 736, 790, 883, 919
LguI GCTCTTC 1 cut(s) 189
LmnI GCTCC 2 cut(s) 150, 893
LpnPI CCDG 9 cut(s) 103, 186, 293, 315, 403, 452, 489, 702, 875
Lsp1109I GCAGC 8 cut(s) 119, 151, 250, 489, 517, 778, 781, 784
LweI GCATC 1 cut(s) 568
MalI GATC 8 cut(s) 306, 456, 512, 603, 738, 792, 885, 921
MboI GATC 8 cut(s) 304, 454, 510, 601, 736, 790, 883, 919
MboII GAAGA 8 cut(s) 75, 206, 360, 372, 375, 461, 738, 893
MfeI CAATTG 1 cut(s) 680
MflI RGATCY 2 cut(s) 304, 510
MhlI GDGCHC 1 cut(s) 146
MlsI TGGCCA 1 cut(s) 807
MluCI AATT 9 cut(s) 38, 55, 126, 189, 393, 426, 484, 680, 857
MluNI TGGCCA 1 cut(s) 807
MlyI GAGTC 2 cut(s) 315, 861
MnlI CCTC 9 cut(s) 335, 338, 350, 378, 524, 700, 703, 754, 760
Mox20I TGGCCA 1 cut(s) 807
MroI TCCGGA 1 cut(s) 475
MroXI GAANNNNTTC 1 cut(s) 397
MscI TGGCCA 1 cut(s) 807
MseI TTAA 1 cut(s) 861
MslI CAYNNNNRTG 1 cut(s) 450
Msp20I TGGCCA 1 cut(s) 807
MspA1I CMGCKG 2 cut(s) 114, 889
MspI CCGG 1 cut(s) 476
MunI CAATTG 1 cut(s) 680
MwoI GCNNNNNNNGC 7 cut(s) 120, 129, 141, 150, 404, 676, 772
NcoI CCATGG 2 cut(s) 22, 902
NdeII GATC 8 cut(s) 304, 454, 510, 601, 736, 790, 883, 919
NlaIII CATG 7 cut(s) 26, 150, 263, 449, 815, 881, 906
NlaIV GGNNCC 4 cut(s) 6, 109, 474, 687
PagI TCATGA 2 cut(s) 445, 877
PciSI GCTCTTC 1 cut(s) 189
PcsI WCGNNNNNNNCGW 2 cut(s) 495, 786
PdmI GAANNNNTTC 1 cut(s) 397
PfeI GAWTC 2 cut(s) 544, 650
PkrI GCNGC 9 cut(s) 134, 166, 265, 504, 507, 672, 768, 771, 774
PleI GAGTC 2 cut(s) 315, 861
PpsI GAGTC 2 cut(s) 315, 861
PspFI CCCAGC 1 cut(s) 889
PspN4I GGNNCC 4 cut(s) 6, 109, 474, 687
PspPI GGNCC 2 cut(s) 387, 712
PstI CTGCAG 1 cut(s) 507
PsuI RGATCY 2 cut(s) 304, 510
PvuII CAGCTG 1 cut(s) 889
RseI CAYNNNNRTG 1 cut(s) 450
SapI GCTCTTC 1 cut(s) 189
SaqAI TTAA 1 cut(s) 861
SatI GCNGC 9 cut(s) 133, 165, 264, 503, 506, 671, 767, 770, 773
Sau3AI GATC 8 cut(s) 304, 454, 510, 601, 736, 790, 883, 919
Sau96I GGNCC 2 cut(s) 387, 712
SchI GAGTC 2 cut(s) 315, 861
SduI GDGCHC 1 cut(s) 146
SfaNI GCATC 1 cut(s) 568
SfcI CTRYAG 1 cut(s) 503
SinI GGWCC 2 cut(s) 387, 712
SmiMI CAYNNNNRTG 1 cut(s) 450
Sse9I AATT 9 cut(s) 38, 55, 126, 189, 393, 426, 484, 680, 857
SsiI CCGC 3 cut(s) 112, 671, 907
SspI AATATT 1 cut(s) 823
StyI CCWWGG 2 cut(s) 22, 902
TaqI TCGA 2 cut(s) 223, 831
TaqII GACCGA 1 cut(s) 173
TasI AATT 9 cut(s) 38, 55, 126, 189, 393, 426, 484, 680, 857
TauI GCSGC 1 cut(s) 673
TfiI GAWTC 2 cut(s) 544, 650
Tru1I TTAA 1 cut(s) 861
Tru9I TTAA 1 cut(s) 861
TscAI CASTG 2 cut(s) 97, 190
TseI GCWGC 8 cut(s) 132, 164, 263, 502, 505, 766, 769, 772
TspDTI ATGAA 3 cut(s) 462, 870, 894
TspRI CASTG 2 cut(s) 97, 190
VpaK11BI GGWCC 2 cut(s) 387, 712
XapI RAATTY 3 cut(s) 38, 55, 857
XcmI CCANNNNNNNNNTGG 1 cut(s) 29
XmnI GAANNNNTTC 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.