Rmu_sc0018004.1_g000002
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018004.1
OG0000636
Physical Location & Seq
Reverse (-)
7328 .. 8299
972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018004.1_g000002.1.cds

Sequence Viewer

Length: 972 bp
atgaacctggaagaccttgatgtgggggctgtgaaaacattccaccccactgattctgatttagtgggaagctatctctacaacataatcaaatccccaaccccaattggaaaacaaacattccctgagattgaaatatatggcaccacaggtttaccaccgtgggatatatggagaatttatgagccttccaaatttccacatcaagattatatctatttcttctcccgggtcaagaagttgggttcccgctgttttcgcagaattggctgcgatgggggcacatggagcgagactgaagctgctaaacctgtctatgtcagtggaattgaagagccttatgggaaactaaggaaatttagatacgaaaacaacaaagacaaaggctgtgaacaccatgctgcttggttgatggatgagttcaccatcaaccaagcacccgatttggctttgtgccgactcaaagtcaatgacaaaggaggaggaagaaaaaagaggaaaaagagttctgatgagactaatgaggatgagaatcacagaaagacaatgactttcaaaaaccgaaaacttgaaccaaaaagagttcaagttcaaaacaacatgtgtgagcaacaaaagggcagtgcctcatttagtagtactagcactacacagcaactgcccccacaatgtgatgatcatgattactgtgtggatgagaacctagtgttctctccaactggcttggttgatgattatcatgacattttgaatagtgatcagtttatggcttctcttgatcaatggtatgaggaacaacaacaacagttttcggattcttcactactagtgccgcaacaacaagtagaacctaacaacagttgtgaggaacaacaacagcaacaagatgagcaaaaattgcggccttctctctctcttgttcacgagcagcagctctgtggtgattttgatctgatggtttatggttattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

323

Amino Acids

37.34

Weight (kDa)

5.14

Isoelectric Point (pI)

49.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 143
AciI CCGC 3 cut(s) 250, 833, 901
AcsI RAATTY 3 cut(s) 177, 194, 356
AcuI CTGAAG 1 cut(s) 318
AdeI CACNNNGTG 1 cut(s) 671
AfaI GTAC 1 cut(s) 640
AfiI CCNNNNNNNGG 1 cut(s) 22
AflIII ACRYGT 1 cut(s) 600
AgsI TTSAA 7 cut(s) 134, 332, 556, 572, 587, 593, 751
AhdI GACNNNNNGTC 1 cut(s) 464
AhlI ACTAGT 1 cut(s) 826
AjnI CCWGG 1 cut(s) 6
AloI GAACNNNNNNTCC 2 cut(s) 490, 522
AluBI AGCT 3 cut(s) 72, 302, 934
AluI AGCT 3 cut(s) 72, 302, 934
Alw26I GTCTC 2 cut(s) 287, 509
AlwNI CAGNNNCTG 1 cut(s) 658
Ama87I CYCGRG 1 cut(s) 228
AoxI GGCC 1 cut(s) 902
ApeKI GCWGC 5 cut(s) 270, 302, 401, 928, 931
ApoI RAATTY 3 cut(s) 177, 194, 356
Asp700I GAANNNNTTC 1 cut(s) 38
AsuC2I CCSGG 2 cut(s) 229, 230
AsuHPI GGTGA 2 cut(s) 415, 953
AvaI CYCGRG 1 cut(s) 228
BaeGI GKGCMC 1 cut(s) 284
BanI GGYRCC 1 cut(s) 143
BauI CACGAG 1 cut(s) 923
BbsI GAAGAC 1 cut(s) 18
BbvI GCAGC 5 cut(s) 257, 289, 388, 940, 943
BccI CCATC 4 cut(s) 269, 406, 434, 949
BciT130I CCWGG 1 cut(s) 8
BclI TGATCA 3 cut(s) 676, 757, 778
BcnI CCSGG 2 cut(s) 229, 230
BcoDI GTCTC 2 cut(s) 287, 509
BcuI ACTAGT 1 cut(s) 826
BfaI CTAG 3 cut(s) 642, 704, 827
BisI GCNGC 7 cut(s) 271, 303, 402, 833, 902, 929, 932
BlsI GCNGC 7 cut(s) 272, 304, 403, 834, 903, 930, 933
BmcAI AGTACT 1 cut(s) 640
Bme1390I CCNGG 3 cut(s) 8, 229, 230
BmeRI GACNNNNNGTC 1 cut(s) 464
BmeT110I CYCGRG 1 cut(s) 228
BmiI GGNNCC 2 cut(s) 145, 247
BmrFI CCNGG 3 cut(s) 8, 229, 230
BpiI GAAGAC 1 cut(s) 18
BpuMI CCSGG 2 cut(s) 229, 230
BsaBI GATNNNNATC 3 cut(s) 531, 735, 948
BsaJI CCNNGG 2 cut(s) 161, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 724
Bse8I GATNNNNATC 3 cut(s) 531, 735, 948
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 2 cut(s) 161, 228
BseGI GGATG 3 cut(s) 421, 532, 700
BseJI GATNNNNATC 3 cut(s) 531, 735, 948
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 724
BseRI GAGGAG 1 cut(s) 495
BseSI GKGCMC 1 cut(s) 284
BseXI GCAGC 5 cut(s) 257, 289, 388, 940, 943
BshFI GGCC 1 cut(s) 904
BshNI GGYRCC 1 cut(s) 143
BsiHKCI CYCGRG 1 cut(s) 228
BsiSI CCGG 1 cut(s) 229
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 2 cut(s) 287, 509
BsnI GGCC 1 cut(s) 904
BsoBI CYCGRG 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 4 cut(s) 676, 757, 778, 949
BspACI CCGC 3 cut(s) 250, 833, 901
BspANI GGCC 1 cut(s) 904
BspCNI CTCAG 1 cut(s) 118
BspHI TCATGA 2 cut(s) 679, 739
BspLI GGNNCC 2 cut(s) 145, 247
BspQI GCTCTTC 1 cut(s) 327
BspT107I GGYRCC 1 cut(s) 143
BsrI ACTGG 1 cut(s) 724
BssECI CCNNGG 2 cut(s) 161, 228
BssMI GATC 4 cut(s) 676, 757, 778, 949
BssSI CACGAG 1 cut(s) 923
Bst2BI CACGAG 1 cut(s) 923
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 4 cut(s) 162, 689, 807, 860
Bst6I CTCTTC 1 cut(s) 327
BstAPI GCANNNNNTGC 1 cut(s) 898
BstDEI CTNAG 2 cut(s) 126, 350
BstDSI CCRYGG 1 cut(s) 161
BstF5I GGATG 3 cut(s) 421, 532, 700
BstKTI GATC 4 cut(s) 679, 760, 781, 952
BstMAI GTCTC 2 cut(s) 287, 509
BstMBI GATC 4 cut(s) 676, 757, 778, 949
BstMWI GCNNNNNNNGC 5 cut(s) 258, 267, 279, 288, 898
BstNI CCWGG 1 cut(s) 8
BstNSI RCATGY 1 cut(s) 604
BstSCI CCNGG 3 cut(s) 6, 227, 228
BstSLI GKGCMC 1 cut(s) 284
BstV1I GCAGC 5 cut(s) 257, 289, 388, 940, 943
BstV2I GAAGAC 1 cut(s) 18
BsuRI GGCC 1 cut(s) 904
BtgI CCRYGG 1 cut(s) 161
BtgZI GCGATG 1 cut(s) 288
BtsCI GGATG 3 cut(s) 421, 532, 700
BtsI GCAGTG 1 cut(s) 628
BtsIMutI CAGTG 3 cut(s) 48, 328, 628
CaiI CAGNNNCTG 1 cut(s) 658
CciI TCATGA 2 cut(s) 679, 739
Cfr9I CCCGGG 1 cut(s) 228
Csp6I GTAC 1 cut(s) 639
CviAII CATG 5 cut(s) 285, 398, 601, 680, 740
CviQI GTAC 1 cut(s) 639
DdeI CTNAG 2 cut(s) 126, 350
DpnI GATC 4 cut(s) 678, 759, 780, 951
DpnII GATC 4 cut(s) 676, 757, 778, 949
DraIII CACNNNGTG 1 cut(s) 671
DriI GACNNNNNGTC 1 cut(s) 464
Eam1104I CTCTTC 1 cut(s) 327
Eam1105I GACNNNNNGTC 1 cut(s) 464
EarI CTCTTC 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 318
Eco88I CYCGRG 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 6
FaeI CATG 5 cut(s) 288, 401, 604, 683, 743
FatI CATG 5 cut(s) 284, 397, 600, 679, 739
FauI CCCGC 1 cut(s) 257
FbaI TGATCA 3 cut(s) 676, 757, 778
Fnu4HI GCNGC 7 cut(s) 271, 303, 402, 833, 902, 929, 932
FokI GGATG 3 cut(s) 428, 539, 707
Fsp4HI GCNGC 7 cut(s) 271, 303, 402, 833, 902, 929, 932
FspBI CTAG 3 cut(s) 642, 704, 827
GluI GCNGC 7 cut(s) 271, 303, 402, 833, 902, 929, 932
HaeIII GGCC 1 cut(s) 904
HapII CCGG 1 cut(s) 229
Hin1II CATG 5 cut(s) 288, 401, 604, 683, 743
HinfI GANTC 4 cut(s) 53, 459, 532, 815
HpaII CCGG 1 cut(s) 229
HphI GGTGA 2 cut(s) 415, 953
Hpy166II GTNNAC 4 cut(s) 155, 392, 423, 922
Hpy188I TCNGA 4 cut(s) 58, 511, 814, 954
Hpy188III TCNNGA 6 cut(s) 206, 235, 680, 740, 776, 923
Hpy8I GTNNAC 4 cut(s) 155, 392, 423, 922
HpyAV CCTTC 2 cut(s) 198, 915
HpyCH4III ACNGT 4 cut(s) 162, 689, 807, 860
HpyF10VI GCNNNNNNNGC 5 cut(s) 258, 267, 279, 288, 898
HpyF3I CTNAG 2 cut(s) 126, 350
Hsp92II CATG 5 cut(s) 288, 401, 604, 683, 743
Ksp22I TGATCA 3 cut(s) 676, 757, 778
Kzo9I GATC 4 cut(s) 676, 757, 778, 949
LguI GCTCTTC 1 cut(s) 327
LmnI GCTCC 1 cut(s) 288
LpnPI CCDG 6 cut(s) 20, 135, 138, 242, 324, 705
Lsp1109I GCAGC 5 cut(s) 257, 289, 388, 940, 943
MaeI CTAG 3 cut(s) 642, 704, 827
MalI GATC 4 cut(s) 678, 759, 780, 951
MboI GATC 4 cut(s) 676, 757, 778, 949
MboII GAAGA 5 cut(s) 23, 214, 344, 498, 810
MfeI CAATTG 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 7 cut(s) 105, 177, 194, 264, 327, 356, 896
MlyI GAGTC 1 cut(s) 453
MmeI TCCRAC 1 cut(s) 740
MnlI CCTC 7 cut(s) 473, 476, 489, 517, 637, 784, 859
MroXI GAANNNNTTC 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 252
MspI CCGG 1 cut(s) 229
MspR9I CCNGG 3 cut(s) 8, 229, 230
MunI CAATTG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 8
MwoI GCNNNNNNNGC 5 cut(s) 258, 267, 279, 288, 898
NciI CCSGG 2 cut(s) 229, 230
NdeII GATC 4 cut(s) 676, 757, 778, 949
NlaIII CATG 5 cut(s) 288, 401, 604, 683, 743
NlaIV GGNNCC 2 cut(s) 145, 247
NspI RCATGY 1 cut(s) 604
PagI TCATGA 2 cut(s) 679, 739
PciI ACATGT 1 cut(s) 600
PciSI GCTCTTC 1 cut(s) 327
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 3 cut(s) 53, 532, 815
PkrI GCNGC 7 cut(s) 272, 304, 403, 834, 903, 930, 933
PleI GAGTC 1 cut(s) 453
PpsI GAGTC 1 cut(s) 453
PscI ACATGT 1 cut(s) 600
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 2 cut(s) 145, 247
PstNI CAGNNNCTG 1 cut(s) 658
RsaI GTAC 1 cut(s) 640
RsaNI GTAC 1 cut(s) 639
SapI GCTCTTC 1 cut(s) 327
SatI GCNGC 7 cut(s) 271, 303, 402, 833, 902, 929, 932
Sau3AI GATC 4 cut(s) 676, 757, 778, 949
ScaI AGTACT 1 cut(s) 640
SchI GAGTC 1 cut(s) 453
ScrFI CCNGG 3 cut(s) 8, 229, 230
SduI GDGCHC 1 cut(s) 284
SetI ASST 9 cut(s) 9, 18, 74, 154, 304, 313, 705, 853, 936
SmaI CCCGGG 1 cut(s) 230
SpeI ACTAGT 1 cut(s) 826
Sse9I AATT 7 cut(s) 105, 177, 194, 264, 327, 356, 896
SsiI CCGC 3 cut(s) 250, 833, 901
SspMI CTAG 3 cut(s) 642, 704, 827
StyD4I CCNGG 3 cut(s) 6, 227, 228
TaaI ACNGT 4 cut(s) 162, 689, 807, 860
TasI AATT 7 cut(s) 105, 177, 194, 264, 327, 356, 896
TatI WGTACW 1 cut(s) 638
TauI GCSGC 2 cut(s) 835, 904
TfiI GAWTC 3 cut(s) 53, 532, 815
TscAI CASTG 3 cut(s) 55, 328, 628
TseI GCWGC 5 cut(s) 270, 302, 401, 928, 931
TspDTI ATGAA 1 cut(s) 17
TspMI CCCGGG 1 cut(s) 228
TspRI CASTG 3 cut(s) 55, 328, 628
XapI RAATTY 3 cut(s) 177, 194, 356
XceI RCATGY 1 cut(s) 604
XmaI CCCGGG 1 cut(s) 228
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 3 cut(s) 642, 704, 827
ZrmI AGTACT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.