Rorug03G0194000
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000636
Physical Location & Seq
Forward (+)
17046467 .. 17049760
3294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0194000.1

Sequence Viewer

Length: 3192 bp
ATGGATGACCCAGACCTTCAAGTAGGGAATGTTATTTCTCCCACTCTCCTAACAGCAATTGAAGAATCAAGGTTTGCAATTATTGTTCTCTCTCCAAACTATGCCTCTTCCACTTGGTGTTTGGAGGAACTTAGATACATTTGTGAATGCATGAAAGAAGACGAGAACAGAATTCTGCCACTTTTTTATTATGTGAATCCTACTGATGTACGATATCAGAAGAGCAATTTCGGTGATGCTTTCACTAAGCATGAAAATTCTGGGCGATACGGATCAGAGGAGATGCGGCAGTGGAGAGCTGCTTTAAACAAAGTGGCAAATTTCTCTGGATGGGACACAAAGAATTATAAAACTGAAAGAGAACTTTTGGATGCCATTGAGGAATCTGTGTGTGATAAATTACGAGCTACTGAACTTGAGCTTAAAATGTCCATCGGAGGTTTTGAAGCATTTGAAGCAACAAAACAAGCCATTGATCAGGTCATGAATGCGCTGAAAGATAATGAGGCCACTACCATTGGAGTCTACGGAATGGGGGGCGTCGGGAAGACGACAATGGTGAATTATGTCGGTGTACAAGCCCAAGAAAATAGGCTTTTTGATAAAGTGATTTTGGCTGTCGTATCCCAAAACCCCGACTTGATGAAAATTCAACAGACATTTGCAGAAATGCTGGGCTTTGAACTCAAGGAGAAGACAGAAACTGTAAGAGCCCGTGAATTGAAGAAGAAAATAATGAGAGGAACCAGGATCCTCATAATCTTGGATGACATTTGGAAGAGAATAGAGTTTTCAGACATTGGAATTCCGAGCCACAACGATCTTCAAAGATGCAATTCCAAAGTTCTACTGACCACCAGAAAATTGGATGTTTGCCGTTCCATGGATTGCCATGCAAACATACGTCTCAATATCTTATCAGAAGAAGATTCTCGGAGCTTATTTGTGAAGGAAGCAAGGAAGTACCCTCTTGACAAATCATCCAATTTCTATGATGTAGCGAGTGAGGTGGCTAGAGAATGCGCTGGTCTTCCTATTGCTTTGATAGCAGTTGCGAGGGCCCTTCGAGGTGAAGGTTTGGACAGATGGAAAGAAGCTGCTCGACGACTAAAAGCGTCTCAACCCCCCGTCCTTGAAGCTGAGGAAGATGTGTTCAAATGCATAAAGTTAAGCTATGATTACTTGAAATCTGATGTTTCGAAATCATGCTTCTTGCTTTGCTGCCTGTTCCCAGAAGATTATGATATCCCAATTGAATACTTGCTCAATTATGGAATTGGGAAAGGAATGTTTCAAGATTCCGACATGCTAGACGCCCGCGCCACAACAAATTCAGCGGTGAAGGCCCTTAAAGACTCTAGCTTGCTTTTGGACTCTAGACATGACGTATGTGTAAGGATGCATGATGTCATTCGGGATATGGCAATATTGATATCATTATCTGAAGACGGCCCGCGGTTCTTGGTGAAAGTTGGCTGTGAATTGAAGAATTGGCCAAGGATTGATGTACATAAAGGCTACTCTGCAATCTCACTAATGAAGAACAAAATTTGCAAGCTACCCGAAGAGTTGGTATGTTCAAATCTCCAGATTTTATTACTGCAAGACAATGCTTCATTAAATGATATCCCTAACTCTTTCTTCCAAAATCAGAAAGAATTAAGAGTCTTGGATCTTAGCCGCACTGGTATTTCATTAATACCCCAATCAATCAGTTTCCTAACCAACCTTCAAGCTTTGTATTTAGATTACTGCAAGAACATAATTGACATTTCTGTAATCGGAAAACTTAACAAGCTTGAGATTCTTAGTATGAGAGGAAATGCTCTGAAAGAATTGCCAAGAGAAATAGGACAGTTGACCAGTCTAAGGATGCTGGATATCACTAGAGCTGATAGATTCCTTTTCACATCCACGAATGGATGTATTGGCACAATTCCATCTAAAGTGATATCAAAGTTGCATAGATTAGAAGAACTGTACATGCAATGTGGATTTTGGGAGTGGGGGAGTAAAATTGATGGAGAAGGAGAAGAAACTAATATTGGCTTTGATGAATTAGTTGGTTTATCATATTTAAGCATTTTGAAAGTTTGGATGTCAGATGCAAATTGCATCCCTATAAGTGTTGAGGTCGAACCGAATTGGGTTTACTTTGATATTACTATTTGCAGCAACAGTTATTTCACTTCGAACAGTCAATCTGGTCATAATTGTAGATCGTTGAGTTTTAATGGAACTGACACTACCATAGGAATCTGTCCGGACTGGTTTGTCAACGCTGTGGTAAAGAATACTGAGAGGCTACTTTATAGTTACTGCAAAGGGTTAAGTAACATTCTTGTGGAATATGACCGTGGAAGGTTACATGGATTGAAAGTTCTCTCTGTAATTGGTTGCCATGAGAACTTGAAAGAATTGATGAATGCAATAACATGTGTTCTAGATATGCCTGTGTTTGAGAATTTGGAAGAGTTGTATCTGGAATACCTGGATTACTTGAAGCAGTTATGTGTTGGTGAGTTACCACCAGGATCTCTCTGCAGTCTGAAATTATTGAAGGTCCTTAAGTGTCCTATCTTGGGGAATGTACTGTTGCCATCTAAATTGTTGCAGCAACTACCAAATCTGGAAAAACTAATCTGTGAGTCAAGTGAAGTGGAACATGTGTTTGGATGTGAAGGTTTTGAGCCAGATCAAACAAATCTGAGAGAGATGGATTTACGGTATCTAGATGTCGTAACAAGCATATGTAATGGTCCTGCTCCACATGGAATGTTCCAGGCTCTAAAGAAATTGGTCATTCGTAATTGCAACTTCCAGGGAAGCCTCTTCACATTTGATGTAGCTCAGTGTCTTTTTCAATTGGAAGACCTTATTGTATCCGAATGCCCTGTCTTGGAAAGAGTAATTGAAGAAAGTAGGGAAACATTGAACAACAAGAAGACCATTCTTCCAAAATTGAAGAACCTAGCTTTGGAAGATCTTCCAATGTTGTACAAGGGAAGTGCTACTATTGATTTTGAGTGTCCTTCATTGGAAAAACTGAGTCTGTTTGGCTGCCCCCACTTGTCATTTCCATCCTCTGCTTCTGACTACTTCCACAGCAGGAACCAAGTCGTTTTCAATGATGCTCCTCGTCATTCTCTGCTACTCAGCAAACTAGGGTATAAGTATGTTGCTGGGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

1063

Amino Acids

120.29

Weight (kDa)

5.39

Isoelectric Point (pI)

40.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 2 - 138 8e-35 TIR domain
TIR_2 PF13676 2 - 65 8.6e-09 TIR domain
NB-ARC PF00931 155 - 320 5.2e-31 NB-ARC domain
LRR_14 PF23598 514 - 667 9.7e-12 Leucine-rich repeat region
LRR_8 PF13855 527 - 585 5.7e-09 Leucine rich repeat
LRR_RPS2 PF23247 823 - 964 1.7e-19 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 905 - 1028 8.6e-13 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 348
AasI GACNNNNNNGTC 1 cut(s) 2273
AccI GTMKAC 1 cut(s) 525
AccII CGCG 2 cut(s) 1320, 1456
AccIII TCCGGA 1 cut(s) 2263
AciI CCGC 6 cut(s) 286, 1318, 1337, 1454, 1456, 1681
AclWI GGATC 5 cut(s) 280, 745, 758, 1680, 2542
AcoI YGGCCR 1 cut(s) 1493
AcsI RAATTY 8 cut(s) 171, 256, 319, 648, 804, 1330, 1548, 2464
AcuI CTGAAG 1 cut(s) 1464
AcyI GRCGYC 2 cut(s) 540, 1314
AdeI CACNNNGTG 1 cut(s) 117
AfaI GTAC 7 cut(s) 210, 576, 965, 1509, 1982, 2592, 2999
AfiI CCNNNNNNNGG 5 cut(s) 883, 1869, 2582, 2899, 2977
AflII CTTAAG 1 cut(s) 2567
AflIII ACRYGT 2 cut(s) 2435, 2665
AjnI CCWGG 5 cut(s) 746, 2490, 2530, 2781, 2820
AjuI GAANNNNNNNTTGG 6 cut(s) 2028, 2060, 2655, 2687, 2960, 2992
AloI GAACNNNNNNTCC 4 cut(s) 1136, 1168, 2364, 2396
Alw26I GTCTC 2 cut(s) 911, 1122
AlwI GGATC 5 cut(s) 280, 745, 758, 1680, 2542
AlwNI CAGNNNCTG 1 cut(s) 704
Aor13HI TCCGGA 1 cut(s) 2263
AoxI GGCC 5 cut(s) 507, 1059, 1344, 1450, 1493
ApaI GGGCCC 1 cut(s) 1063
ApeKI GCWGC 6 cut(s) 299, 1097, 1221, 2172, 2614, 3060
ApoI RAATTY 8 cut(s) 171, 256, 319, 648, 804, 1330, 1548, 2464
ArsI GACNNNNNNTTYG 2 cut(s) 2880, 2912
AseI ATTAAT 1 cut(s) 1697
Asp700I GAANNNNTTC 1 cut(s) 2985
AspLEI GCGC 3 cut(s) 493, 1025, 1322
AspS9I GGNCC 6 cut(s) 1059, 1060, 1345, 1451, 2563, 2759
AsuHPI GGTGA 6 cut(s) 245, 571, 1082, 1351, 1477, 2531
AsuII TTCGAA 2 cut(s) 1199, 2192
AvaII GGWCC 2 cut(s) 2563, 2759
BaeGI GKGCMC 1 cut(s) 1063
BaeI ACNNNNGTAYC 2 cut(s) 127, 160
BalI TGGCCA 1 cut(s) 1495
BamHI GGATCC 1 cut(s) 750
BanII GRGCYC 2 cut(s) 715, 1063
BbsI GAAGAC 7 cut(s) 165, 554, 701, 1022, 1452, 2877, 2951
BbvCI CCTCAGC 1 cut(s) 1140
BbvI GCAGC 6 cut(s) 286, 1084, 1208, 2184, 2626, 3047
BccI CCATC 8 cut(s) 324, 440, 1080, 1948, 2015, 2608, 2710, 3088
BceAI ACGGC 2 cut(s) 861, 1465
BciT130I CCWGG 5 cut(s) 748, 2492, 2532, 2783, 2822
BciVI GTATCC 2 cut(s) 634, 2893
BclI TGATCA 1 cut(s) 475
BcoDI GTCTC 2 cut(s) 911, 1122
BfaI CTAG 9 cut(s) 1014, 1310, 1359, 1377, 1887, 2444, 2732, 2972, 3164
BfmI CTRYAG 1 cut(s) 2542
BfrI CTTAAG 1 cut(s) 2567
BfuI GTATCC 2 cut(s) 634, 2893
BglII AGATCT 1 cut(s) 2983
BisI GCNGC 8 cut(s) 287, 300, 1098, 1222, 1681, 2173, 2615, 3061
BlsI GCNGC 8 cut(s) 288, 301, 1099, 1223, 1682, 2174, 2616, 3062
Bme1390I CCNGG 5 cut(s) 748, 2492, 2532, 2783, 2822
Bme18I GGWCC 2 cut(s) 2563, 2759
BmgT120I GGNCC 6 cut(s) 1059, 1060, 1345, 1451, 2563, 2759
BmiI GGNNCC 4 cut(s) 745, 752, 1061, 3113
BmrFI CCNGG 5 cut(s) 748, 2492, 2532, 2783, 2822
BmsI GCATC 9 cut(s) 226, 273, 361, 821, 1389, 1863, 2095, 2124, 3121
BpiI GAAGAC 7 cut(s) 165, 554, 701, 1022, 1452, 2877, 2951
BpmI CTGGAG 1 cut(s) 1571
Bpu10I CCTNAGC 1 cut(s) 1140
Bpu14I TTCGAA 2 cut(s) 1199, 2192
BpuEI CTTGAG 3 cut(s) 437, 671, 1820
BsaBI GATNNNNATC 1 cut(s) 271
BsaHI GRCGYC 2 cut(s) 540, 1314
BsaJI CCNNGG 5 cut(s) 882, 1454, 1496, 2356, 2821
BsaWI WCCGGW 1 cut(s) 2263
Bsc4I CCNNNNNNNGG 5 cut(s) 883, 1869, 2582, 2899, 2977
Bse1I ACTGG 3 cut(s) 1690, 1863, 2273
Bse3DI GCAATG 1 cut(s) 1994
Bse8I GATNNNNATC 1 cut(s) 271
BseAI TCCGGA 1 cut(s) 2263
BseBI CCWGG 5 cut(s) 748, 2492, 2532, 2783, 2822
BseDI CCNNGG 5 cut(s) 882, 1454, 1496, 2356, 2821
BseJI GATNNNNATC 1 cut(s) 271
BseLI CCNNNNNNNGG 5 cut(s) 883, 1869, 2582, 2899, 2977
BseMI GCAATG 1 cut(s) 1994
BseMII CTCAG 6 cut(s) 1131, 2289, 2699, 2864, 3038, 3169
BseNI ACTGG 3 cut(s) 1690, 1863, 2273
BseRI GAGGAG 2 cut(s) 293, 3126
BseSI GKGCMC 1 cut(s) 1063
BseXI GCAGC 6 cut(s) 286, 1084, 1208, 2184, 2626, 3047
BseYI CCCAGC 2 cut(s) 673, 3182
Bsh1236I CGCG 2 cut(s) 1320, 1456
BshFI GGCC 5 cut(s) 509, 1061, 1346, 1452, 1495
BsiSI CCGG 1 cut(s) 2264
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 5 cut(s) 883, 1869, 2582, 2899, 2977
BsmAI GTCTC 2 cut(s) 911, 1122
BsmBI CGTCTC 2 cut(s) 911, 1122
BsmFI GGGAC 1 cut(s) 347
BsmI GAATGC 5 cut(s) 152, 493, 1025, 2431, 2894
BsnI GGCC 5 cut(s) 509, 1061, 1346, 1452, 1495
Bsp119I TTCGAA 2 cut(s) 1199, 2192
Bsp120I GGGCCC 1 cut(s) 1059
Bsp1286I GDGCHC 2 cut(s) 715, 1063
Bsp13I TCCGGA 1 cut(s) 2263
Bsp1407I TGTACA 4 cut(s) 574, 1507, 1980, 2997
Bsp143I GATC 9 cut(s) 272, 475, 750, 820, 1672, 2219, 2534, 2695, 2983
Bsp19I CCATGG 1 cut(s) 882
BspACI CCGC 6 cut(s) 286, 1318, 1337, 1454, 1456, 1681
BspANI GGCC 5 cut(s) 509, 1061, 1346, 1452, 1495
BspCNI CTCAG 6 cut(s) 1132, 2290, 2700, 2863, 3039, 3168
BspEI TCCGGA 1 cut(s) 2263
BspFNI CGCG 2 cut(s) 1320, 1456
BspHI TCATGA 1 cut(s) 483
BspLI GGNNCC 4 cut(s) 745, 752, 1061, 3113
BspMAI CTGCAG 1 cut(s) 2546
BspPI GGATC 5 cut(s) 280, 745, 758, 1680, 2542
BspQI GCTCTTC 1 cut(s) 215
BspT104I TTCGAA 2 cut(s) 1199, 2192
BspTI CTTAAG 1 cut(s) 2567
BsrDI GCAATG 1 cut(s) 1994
BsrGI TGTACA 4 cut(s) 574, 1507, 1980, 2997
BsrI ACTGG 3 cut(s) 1690, 1863, 2273
BssECI CCNNGG 5 cut(s) 882, 1454, 1496, 2356, 2821
BssMI GATC 9 cut(s) 272, 475, 750, 820, 1672, 2219, 2534, 2695, 2983
BssNI GRCGYC 2 cut(s) 540, 1314
BssT1I CCWWGG 2 cut(s) 882, 1496
Bst2UI CCWGG 5 cut(s) 748, 2492, 2532, 2783, 2822
Bst4CI ACNGT 8 cut(s) 706, 1857, 1980, 2180, 2198, 2357, 2595, 2727
Bst6I CTCTTC 6 cut(s) 112, 215, 773, 1560, 2466, 2837
BstACI GRCGYC 2 cut(s) 540, 1314
BstAFI CTTAAG 1 cut(s) 2567
BstAUI TGTACA 4 cut(s) 574, 1507, 1980, 2997
BstBI TTCGAA 2 cut(s) 1199, 2192
BstC8I GCNNGC 4 cut(s) 1318, 1364, 1454, 1556
BstDSI CCRYGG 3 cut(s) 882, 1454, 2356
BstFNI CGCG 2 cut(s) 1320, 1456
BstHHI GCGC 3 cut(s) 493, 1025, 1322
BstKTI GATC 9 cut(s) 275, 478, 753, 823, 1675, 2222, 2537, 2698, 2986
BstMAI GTCTC 2 cut(s) 911, 1122
BstMBI GATC 9 cut(s) 272, 475, 750, 820, 1672, 2219, 2534, 2695, 2983
BstMWI GCNNNNNNNGC 3 cut(s) 455, 1046, 1343
BstNI CCWGG 5 cut(s) 748, 2492, 2532, 2783, 2822
BstNSI RCATGY 4 cut(s) 1309, 1987, 2439, 2669
BstSCI CCNGG 5 cut(s) 746, 2490, 2530, 2781, 2820
BstSFI CTRYAG 1 cut(s) 2542
BstSLI GKGCMC 1 cut(s) 1063
BstUI CGCG 2 cut(s) 1320, 1456
BstV1I GCAGC 6 cut(s) 286, 1084, 1208, 2184, 2626, 3047
BstV2I GAAGAC 7 cut(s) 165, 554, 701, 1022, 1452, 2877, 2951
BstX2I RGATCY 4 cut(s) 750, 1672, 2534, 2983
BstXI CCANNNNNNTGG 1 cut(s) 865
BstYI RGATCY 4 cut(s) 750, 1672, 2534, 2983
BsuI GTATCC 2 cut(s) 634, 2893
BsuRI GGCC 5 cut(s) 509, 1061, 1346, 1452, 1495
BtgI CCRYGG 3 cut(s) 882, 1454, 2356
BtsI GCAGTG 1 cut(s) 296
BtsIMutI CAGTG 3 cut(s) 296, 1683, 2858
Cac8I GCNNGC 4 cut(s) 1318, 1364, 1454, 1556
CaiI CAGNNNCTG 1 cut(s) 704
CciI TCATGA 1 cut(s) 483
CfoI GCGC 3 cut(s) 493, 1025, 1322
Cfr13I GGNCC 6 cut(s) 1059, 1060, 1345, 1451, 2563, 2759
Cfr42I CCGCGG 1 cut(s) 1457
CseI GACGC 3 cut(s) 529, 1104, 1322
Csp6I GTAC 7 cut(s) 209, 575, 964, 1508, 1981, 2591, 2998
CspCI CAANNNNNGTGG 4 cut(s) 499, 534, 2640, 2675
CviQI GTAC 7 cut(s) 209, 575, 964, 1508, 1981, 2591, 2998
DpnI GATC 9 cut(s) 274, 477, 752, 822, 1674, 2221, 2536, 2697, 2985
DpnII GATC 9 cut(s) 272, 475, 750, 820, 1672, 2219, 2534, 2695, 2983
DraI TTTAAA 1 cut(s) 306
DraIII CACNNNGTG 1 cut(s) 117
DrdI GACNNNNNNGTC 1 cut(s) 2273
DseDI GACNNNNNNGTC 1 cut(s) 2273
EaeI YGGCCR 1 cut(s) 1493
Eam1104I CTCTTC 6 cut(s) 112, 215, 773, 1560, 2466, 2837
EarI CTCTTC 6 cut(s) 112, 215, 773, 1560, 2466, 2837
Eco130I CCWWGG 2 cut(s) 882, 1496
Eco24I GRGCYC 2 cut(s) 715, 1063
Eco32I GATATC 6 cut(s) 215, 1246, 1434, 1627, 1882, 1953
Eco47I GGWCC 2 cut(s) 2563, 2759
Eco57I CTGAAG 1 cut(s) 1464
EcoO109I RGGNCCY 4 cut(s) 1059, 1060, 1345, 2563
EcoRI GAATTC 2 cut(s) 171, 804
EcoRII CCWGG 5 cut(s) 746, 2490, 2530, 2781, 2820
EcoRV GATATC 6 cut(s) 215, 1246, 1434, 1627, 1882, 1953
EcoT14I CCWWGG 2 cut(s) 882, 1496
EcoT22I ATGCAT 3 cut(s) 152, 1163, 1404
EcoT38I GRGCYC 2 cut(s) 715, 1063
ErhI CCWWGG 2 cut(s) 882, 1496
Esp3I CGTCTC 2 cut(s) 911, 1122
FaqI GGGAC 1 cut(s) 347
FauI CCCGC 2 cut(s) 1325, 1461
FauNDI CATATG 1 cut(s) 2750
FbaI TGATCA 1 cut(s) 475
FblI GTMKAC 1 cut(s) 525
Fnu4HI GCNGC 8 cut(s) 287, 300, 1098, 1222, 1681, 2173, 2615, 3061
FriOI GRGCYC 2 cut(s) 715, 1063
Fsp4HI GCNGC 8 cut(s) 287, 300, 1098, 1222, 1681, 2173, 2615, 3061
FspBI CTAG 9 cut(s) 1014, 1310, 1359, 1377, 1887, 2444, 2732, 2972, 3164
GlaI GCGC 3 cut(s) 492, 1024, 1321
GluI GCNGC 8 cut(s) 287, 300, 1098, 1222, 1681, 2173, 2615, 3061
GsaI CCCAGC 2 cut(s) 677, 3186
GsuI CTGGAG 1 cut(s) 1571
HaeIII GGCC 5 cut(s) 509, 1061, 1346, 1452, 1495
HapII CCGG 1 cut(s) 2264
HgaI GACGC 3 cut(s) 529, 1104, 1322
HhaI GCGC 3 cut(s) 493, 1025, 1322
Hin1I GRCGYC 2 cut(s) 540, 1314
Hin6I GCGC 3 cut(s) 491, 1023, 1320
HinP1I GCGC 3 cut(s) 491, 1023, 1320
HincII GTYRAC 2 cut(s) 1860, 2278
HindII GTYRAC 2 cut(s) 1860, 2278
HindIII AAGCTT 2 cut(s) 1734, 1796
HpaII CCGG 1 cut(s) 2264
HphI GGTGA 6 cut(s) 245, 571, 1082, 1351, 1477, 2531
Hpy166II GTNNAC 5 cut(s) 526, 575, 1860, 2152, 2278
Hpy8I GTNNAC 5 cut(s) 526, 575, 1860, 2152, 2278
Hpy99I CGWCG 2 cut(s) 545, 1107
HpyCH4III ACNGT 8 cut(s) 706, 1857, 1980, 2180, 2198, 2357, 2595, 2727
HpyCH4IV ACGT 2 cut(s) 904, 1386
HpyF10VI GCNNNNNNNGC 3 cut(s) 455, 1046, 1343
HpySE526I ACGT 2 cut(s) 904, 1386
Hsp92I GRCGYC 2 cut(s) 540, 1314
HspAI GCGC 3 cut(s) 491, 1023, 1320
Kpn2I TCCGGA 1 cut(s) 2263
Ksp22I TGATCA 1 cut(s) 475
KspI CCGCGG 1 cut(s) 1457
Kzo9I GATC 9 cut(s) 272, 475, 750, 820, 1672, 2219, 2534, 2695, 2983
LguI GCTCTTC 1 cut(s) 215
LmnI GCTCC 3 cut(s) 936, 2770, 3139
Lsp1109I GCAGC 6 cut(s) 286, 1084, 1208, 2184, 2626, 3047
LweI GCATC 9 cut(s) 226, 273, 361, 821, 1389, 1863, 2095, 2124, 3121
MaeI CTAG 9 cut(s) 1014, 1310, 1359, 1377, 1887, 2444, 2732, 2972, 3164
MaeII ACGT 2 cut(s) 904, 1386
MaeIII GTNAC 5 cut(s) 2315, 2333, 2364, 2523, 2740
MalI GATC 9 cut(s) 274, 477, 752, 822, 1674, 2221, 2536, 2697, 2985
MboI GATC 9 cut(s) 272, 475, 750, 820, 1672, 2219, 2534, 2695, 2983
MfeI CAATTG 3 cut(s) 57, 1251, 2864
MflI RGATCY 4 cut(s) 750, 1672, 2534, 2983
MhlI GDGCHC 2 cut(s) 715, 1063
MlsI TGGCCA 1 cut(s) 1495
MluNI TGGCCA 1 cut(s) 1495
MlyI GAGTC 6 cut(s) 531, 1349, 1367, 1674, 2657, 3058
MmeI TCCRAC 1 cut(s) 1326
Mox20I TGGCCA 1 cut(s) 1495
Mph1103I ATGCAT 3 cut(s) 152, 1163, 1404
MroI TCCGGA 1 cut(s) 2263
MroXI GAANNNNTTC 1 cut(s) 2985
MscI TGGCCA 1 cut(s) 1495
MslI CAYNNNNRTG 1 cut(s) 2342
Msp20I TGGCCA 1 cut(s) 1495
MspA1I CMGCKG 2 cut(s) 1337, 1456
MspCI CTTAAG 1 cut(s) 2567
MspI CCGG 1 cut(s) 2264
MspR9I CCNGG 5 cut(s) 748, 2492, 2532, 2783, 2822
MunI CAATTG 3 cut(s) 57, 1251, 2864
Mva1269I GAATGC 5 cut(s) 152, 493, 1025, 2431, 2894
MvaI CCWGG 5 cut(s) 748, 2492, 2532, 2783, 2822
MvnI CGCG 2 cut(s) 1320, 1456
MwoI GCNNNNNNNGC 3 cut(s) 455, 1046, 1343
NcoI CCATGG 1 cut(s) 882
NdeI CATATG 1 cut(s) 2750
NdeII GATC 9 cut(s) 272, 475, 750, 820, 1672, 2219, 2534, 2695, 2983
NlaIV GGNNCC 4 cut(s) 745, 752, 1061, 3113
NsiI ATGCAT 3 cut(s) 152, 1163, 1404
NspI RCATGY 4 cut(s) 1309, 1987, 2439, 2669
NspV TTCGAA 2 cut(s) 1199, 2192
PagI TCATGA 1 cut(s) 483
PciI ACATGT 2 cut(s) 2435, 2665
PciSI GCTCTTC 1 cut(s) 215
PctI GAATGC 5 cut(s) 152, 493, 1025, 2431, 2894
PdmI GAANNNNTTC 1 cut(s) 2985
PfeI GAWTC 8 cut(s) 65, 196, 383, 929, 1298, 1804, 1899, 2256
PkrI GCNGC 8 cut(s) 288, 301, 1099, 1223, 1682, 2174, 2616, 3062
PleI GAGTC 6 cut(s) 530, 1349, 1367, 1673, 2656, 3057
PpsI GAGTC 6 cut(s) 530, 1349, 1367, 1673, 2656, 3057
PpuMI RGGWCCY 1 cut(s) 2563
PscI ACATGT 2 cut(s) 2435, 2665
PshBI ATTAAT 1 cut(s) 1697
PsiI TTATAA 1 cut(s) 348
Psp5II RGGWCCY 1 cut(s) 2563
Psp6I CCWGG 5 cut(s) 746, 2490, 2530, 2781, 2820
PspFI CCCAGC 2 cut(s) 673, 3182
PspGI CCWGG 5 cut(s) 746, 2490, 2530, 2781, 2820
PspN4I GGNNCC 4 cut(s) 745, 752, 1061, 3113
PspOMI GGGCCC 1 cut(s) 1059
PspPI GGNCC 6 cut(s) 1059, 1060, 1345, 1451, 2563, 2759
PspPPI RGGWCCY 1 cut(s) 2563
PsrI GAACNNNNNNTAC 2 cut(s) 2230, 2262
PstI CTGCAG 1 cut(s) 2546
PstNI CAGNNNCTG 1 cut(s) 704
PsuI RGATCY 4 cut(s) 750, 1672, 2534, 2983
RsaI GTAC 7 cut(s) 210, 576, 965, 1509, 1982, 2592, 2999
RsaNI GTAC 7 cut(s) 209, 575, 964, 1508, 1981, 2591, 2998
RseI CAYNNNNRTG 1 cut(s) 2342
SacII CCGCGG 1 cut(s) 1457
SapI GCTCTTC 1 cut(s) 215
SatI GCNGC 8 cut(s) 287, 300, 1098, 1222, 1681, 2173, 2615, 3061
Sau3AI GATC 9 cut(s) 272, 475, 750, 820, 1672, 2219, 2534, 2695, 2983
Sau96I GGNCC 6 cut(s) 1059, 1060, 1345, 1451, 2563, 2759
SchI GAGTC 6 cut(s) 531, 1349, 1367, 1674, 2657, 3058
ScrFI CCNGG 5 cut(s) 748, 2492, 2532, 2783, 2822
SduI GDGCHC 2 cut(s) 715, 1063
SfaNI GCATC 9 cut(s) 226, 273, 361, 821, 1389, 1863, 2095, 2124, 3121
SfcI CTRYAG 1 cut(s) 2542
Sfr303I CCGCGG 1 cut(s) 1457
SfuI TTCGAA 2 cut(s) 1199, 2192
SgrBI CCGCGG 1 cut(s) 1457
SinI GGWCC 2 cut(s) 2563, 2759
SmiMI CAYNNNNRTG 1 cut(s) 2342
SmlI CTYRAG 4 cut(s) 416, 686, 1799, 2567
SmoI CTYRAG 4 cut(s) 416, 686, 1799, 2567
SsiI CCGC 6 cut(s) 286, 1318, 1337, 1454, 1456, 1681
SspI AATATT 2 cut(s) 1428, 2044
SspMI CTAG 9 cut(s) 1014, 1310, 1359, 1377, 1887, 2444, 2732, 2972, 3164
StyD4I CCNGG 5 cut(s) 746, 2490, 2530, 2781, 2820
StyI CCWWGG 2 cut(s) 882, 1496
TaaI ACNGT 8 cut(s) 706, 1857, 1980, 2180, 2198, 2357, 2595, 2727
TaiI ACGT 2 cut(s) 907, 1389
TaqI TCGA 5 cut(s) 1066, 1102, 1199, 2136, 2192
TatI WGTACW 5 cut(s) 574, 1507, 1980, 2590, 2997
TauI GCSGC 2 cut(s) 289, 1683
TfiI GAWTC 8 cut(s) 65, 196, 383, 929, 1298, 1804, 1899, 2256
TscAI CASTG 3 cut(s) 296, 1690, 2858
TseI GCWGC 6 cut(s) 299, 1097, 1221, 2172, 2614, 3060
TspGWI ACGGA 2 cut(s) 285, 543
TspRI CASTG 3 cut(s) 296, 1690, 2858
Vha464I CTTAAG 1 cut(s) 2567
VpaK11BI GGWCC 2 cut(s) 2563, 2759
VspI ATTAAT 1 cut(s) 1697
XapI RAATTY 8 cut(s) 171, 256, 319, 648, 804, 1330, 1548, 2464
XbaI TCTAGA 3 cut(s) 1376, 2443, 2731
XceI RCATGY 4 cut(s) 1309, 1987, 2439, 2669
XcmI CCANNNNNNNNNTGG 2 cut(s) 118, 862
XmiI GTMKAC 1 cut(s) 525
XmnI GAANNNNTTC 1 cut(s) 2985
XspI CTAG 9 cut(s) 1014, 1310, 1359, 1377, 1887, 2444, 2732, 2972, 3164
Zsp2I ATGCAT 3 cut(s) 152, 1163, 1404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.