FvH4_5g37880
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000636
Physical Location & Seq
Forward (+)
27963455 .. 27965635
2181 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37880.t1

Sequence Viewer

Length: 1131 bp
ATGGATCAGCAATTCGCCACTCTTGCCGAACTCAGTGTCGGAGTGGTCACGACATTTCAACCTAGCGAAGCCCAGTTGGTGCGTCATTACCTCTACAATAAGGTCTTCAACGACGACCCATCCTCAACCTTCCCTCAGATCAATATCTACGGCAAGGATGGGTTGCCTCCGTGGGAGATATGGAGGATCTATCAGCAATGCAAGTATCCACACCAGGAGTTCATCTACTTCTTCTCTAGGGCTGAAAAGTTAAACCCTAACAAAACGCGCCACTCTCGTAAAATCGGCACCGGTACATGGCATGAAACTGAAAATGTCAGGCCAATCTATGTCGCTGGATATGAAGAGGCGTATGGGTCACTCAGGAAGTTCAGATACCAGAAGAAGGAGAGCAAGAATGAGAAGGACAAGAAGGAAAGAGATATTTGTGATGAGCACCATGGTGCTTGGTTAATGGATGAGTTCACCATTAACCAAGCACCGGACTTGGCTCTGTACCGGCTCAAGGTGAATGCCAAAGGTGGAGACAGAAAGAGGAAGTCATCTGCGGCTGAGAATAATGGGGAGGATGAGAGTTTGATGAGAAGCAAACAGTCTCTCAAAAAGCGAAAACTTGAACCCAGAAGAGCAGTTCAGAACAGTTGTATGTCTGAGCATCAACAAAGCACCACTTCTCAGCAAATGCCCTCTTCCTATTTTCATCAAGTTGATCAAGTGGTTCCGGAAAACTTTCCTCATGAGATTGAGCAGATTCTGATGAGTGATGATGATGATGATGAGAATCTCTCTACAACTGCTTTATTGTGGAATGAGGCTCAGCTTAGGGCTTGTGTTGCTCGATCAATACCTGATGAGCAGCACCCACAGCCAGAGCAATATTCAGTAGCGCCACAACAGCAGTTGGGACCTGAGAGTAGCAGCAGTCAAGAGGAGTACCAAGTACAACTACCACAACAAGATCAAGCCTCTTCTTCTCATTCTAATGAGCAGCAGCTTCTTGCTGATGACTATCAGATATCAATGATAGATTTTGATTCACTCGATGACACCTGCTTTCAGTCCATCAATGGACTCTTTACTGATGAAGATCAGCCAAGCACTCAGTCGTGGTGGCATTTGGATGGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

377

Amino Acids

43.6

Weight (kDa)

4.99

Isoelectric Point (pI)

60.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 18 - 156 1.4e-17 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1058
Acc36I ACCTGC 1 cut(s) 1058
AccB1I GGYRCC 1 cut(s) 287
AccII CGCG 1 cut(s) 268
AccIII TCCGGA 1 cut(s) 721
AciI CCGC 1 cut(s) 548
AclWI GGATC 2 cut(s) 12, 194
AfaI GTAC 4 cut(s) 295, 497, 935, 942
AfiI CCNNNNNNNGG 4 cut(s) 297, 385, 481, 505
AgeI ACCGGT 1 cut(s) 290
AgsI TTSAA 3 cut(s) 59, 109, 617
AjnI CCWGG 1 cut(s) 213
AleI CACNNNNGTG 1 cut(s) 441
AluBI AGCT 2 cut(s) 820, 994
AluI AGCT 2 cut(s) 820, 994
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 2 cut(s) 519, 600
AlwI GGATC 2 cut(s) 12, 194
AlwNI CAGNNNCTG 1 cut(s) 754
Aor13HI TCCGGA 1 cut(s) 721
AoxI GGCC 1 cut(s) 320
ApeKI GCWGC 4 cut(s) 856, 918, 988, 991
ArsI GACNNNNNNTTYG 2 cut(s) 21, 53
AsiGI ACCGGT 1 cut(s) 290
Asp700I GAANNNNTTC 1 cut(s) 729
AspLEI GCGC 2 cut(s) 270, 889
AspS9I GGNCC 1 cut(s) 905
AsuHPI GGTGA 2 cut(s) 457, 520
AvaII GGWCC 1 cut(s) 905
BanI GGYRCC 1 cut(s) 287
BarI GAAGNNNNNNTAC 2 cut(s) 359, 391
BbsI GAAGAC 1 cut(s) 97
Bbv12I GWGCWC 1 cut(s) 438
BbvI GCAGC 4 cut(s) 868, 930, 1000, 1003
BccI CCATC 4 cut(s) 127, 152, 1070, 1115
BceAI ACGGC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 215
BciVI GTATCC 1 cut(s) 216
BclI TGATCA 1 cut(s) 709
BcoDI GTCTC 2 cut(s) 519, 600
BfaI CTAG 2 cut(s) 63, 237
BfoI RGCGCY 1 cut(s) 890
BfuAI ACCTGC 1 cut(s) 1058
BfuI GTATCC 1 cut(s) 216
BisI GCNGC 5 cut(s) 549, 857, 919, 989, 992
BlpI GCTNAGC 1 cut(s) 816
BlsI GCNGC 5 cut(s) 550, 858, 920, 990, 993
Bme1390I CCNGG 1 cut(s) 215
Bme18I GGWCC 1 cut(s) 905
BmgT120I GGNCC 1 cut(s) 905
BmiI GGNNCC 3 cut(s) 289, 720, 906
BmrFI CCNGG 1 cut(s) 215
BmrI ACTGGG 1 cut(s) 67
BmsI GCATC 1 cut(s) 664
BmuI ACTGGG 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 97
BplI GAGNNNNNCTC 2 cut(s) 770, 802
Bpu10I CCTNAGC 1 cut(s) 821
Bpu1102I GCTNAGC 1 cut(s) 816
BpuEI CTTGAG 1 cut(s) 488
BsaBI GATNNNNATC 4 cut(s) 143, 780, 1008, 1086
BsaJI CCNNGG 2 cut(s) 170, 439
BsaWI WCCGGW 3 cut(s) 290, 481, 721
Bsc4I CCNNNNNNNGG 4 cut(s) 297, 385, 481, 505
Bse118I RCCGGY 2 cut(s) 290, 498
Bse1I ACTGG 1 cut(s) 73
Bse3DI GCAATG 1 cut(s) 203
Bse8I GATNNNNATC 4 cut(s) 143, 780, 1008, 1086
BseAI TCCGGA 1 cut(s) 721
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 2 cut(s) 170, 439
BseGI GGATG 5 cut(s) 119, 163, 463, 574, 1126
BseJI GATNNNNATC 4 cut(s) 143, 780, 1008, 1086
BseLI CCNNNNNNNGG 4 cut(s) 297, 385, 481, 505
BseMI GCAATG 1 cut(s) 203
BseMII CTCAG 9 cut(s) 46, 149, 376, 543, 642, 689, 830, 900, 1115
BseNI ACTGG 1 cut(s) 73
BseRI GAGGAG 1 cut(s) 944
BseXI GCAGC 4 cut(s) 868, 930, 1000, 1003
Bsh1236I CGCG 1 cut(s) 268
BshFI GGCC 1 cut(s) 322
BshNI GGYRCC 1 cut(s) 287
BshTI ACCGGT 1 cut(s) 290
BsiHKAI GWGCWC 1 cut(s) 438
BsiSI CCGG 4 cut(s) 291, 482, 499, 722
BslFI GGGAC 1 cut(s) 918
BslI CCNNNNNNNGG 4 cut(s) 297, 385, 481, 505
BsmAI GTCTC 2 cut(s) 519, 600
BsmFI GGGAC 1 cut(s) 918
BsmI GAATGC 1 cut(s) 517
BsnI GGCC 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 438
Bsp13I TCCGGA 1 cut(s) 721
Bsp143I GATC 7 cut(s) 4, 138, 186, 709, 839, 958, 1087
Bsp1720I GCTNAGC 1 cut(s) 816
Bsp19I CCATGG 1 cut(s) 439
BspACI CCGC 1 cut(s) 548
BspANI GGCC 1 cut(s) 322
BspCNI CTCAG 9 cut(s) 45, 148, 375, 544, 643, 688, 829, 901, 1114
BspEI TCCGGA 1 cut(s) 721
BspFNI CGCG 1 cut(s) 268
BspHI TCATGA 1 cut(s) 736
BspLI GGNNCC 3 cut(s) 289, 720, 906
BspMI ACCTGC 1 cut(s) 1058
BspPI GGATC 2 cut(s) 12, 194
BspQI GCTCTTC 1 cut(s) 619
BspT107I GGYRCC 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 203
BsrFI RCCGGY 2 cut(s) 290, 498
BsrI ACTGG 1 cut(s) 73
BssAI RCCGGY 2 cut(s) 290, 498
BssECI CCNNGG 2 cut(s) 170, 439
BssMI GATC 7 cut(s) 4, 138, 186, 709, 839, 958, 1087
BssT1I CCWWGG 1 cut(s) 439
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 2 cut(s) 594, 641
Bst6I CTCTTC 4 cut(s) 339, 619, 694, 973
BstDSI CCRYGG 2 cut(s) 170, 439
BstF5I GGATG 5 cut(s) 119, 163, 463, 574, 1126
BstFNI CGCG 1 cut(s) 268
BstH2I RGCGCY 1 cut(s) 890
BstHHI GCGC 2 cut(s) 270, 889
BstKTI GATC 7 cut(s) 7, 141, 189, 712, 842, 961, 1090
BstMAI GTCTC 2 cut(s) 519, 600
BstMBI GATC 7 cut(s) 4, 138, 186, 709, 839, 958, 1087
BstMWI GCNNNNNNNGC 4 cut(s) 23, 833, 865, 895
BstNI CCWGG 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 213
BstUI CGCG 1 cut(s) 268
BstV1I GCAGC 4 cut(s) 868, 930, 1000, 1003
BstV2I GAAGAC 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
BsuI GTATCC 1 cut(s) 216
BsuRI GGCC 1 cut(s) 322
BtgI CCRYGG 2 cut(s) 170, 439
BtsCI GGATG 5 cut(s) 119, 163, 463, 574, 1126
BtsIMutI CAGTG 1 cut(s) 40
BveI ACCTGC 1 cut(s) 1058
CaiI CAGNNNCTG 1 cut(s) 754
CciI TCATGA 1 cut(s) 736
CfoI GCGC 2 cut(s) 270, 889
Cfr10I RCCGGY 2 cut(s) 290, 498
Cfr13I GGNCC 1 cut(s) 905
CseI GACGC 1 cut(s) 71
Csp6I GTAC 4 cut(s) 294, 496, 934, 941
CspAI ACCGGT 1 cut(s) 290
CviAII CATG 4 cut(s) 297, 302, 440, 737
CviQI GTAC 4 cut(s) 294, 496, 934, 941
DpnI GATC 7 cut(s) 6, 140, 188, 711, 841, 960, 1089
DpnII GATC 7 cut(s) 4, 138, 186, 709, 839, 958, 1087
Eam1104I CTCTTC 4 cut(s) 339, 619, 694, 973
EarI CTCTTC 4 cut(s) 339, 619, 694, 973
Eco130I CCWWGG 1 cut(s) 439
Eco32I GATATC 1 cut(s) 1017
Eco47I GGWCC 1 cut(s) 905
EcoO109I RGGNCCY 1 cut(s) 905
EcoRII CCWGG 1 cut(s) 213
EcoRV GATATC 1 cut(s) 1017
EcoT14I CCWWGG 1 cut(s) 439
ErhI CCWWGG 1 cut(s) 439
FaeI CATG 4 cut(s) 300, 305, 443, 740
FaiI YATR 9 cut(s) 181, 298, 303, 330, 342, 354, 441, 647, 738
FalI AAGNNNNNCTT 2 cut(s) 655, 687
FaqI GGGAC 1 cut(s) 918
FatI CATG 4 cut(s) 296, 301, 439, 736
FbaI TGATCA 1 cut(s) 709
Fnu4HI GCNGC 5 cut(s) 549, 857, 919, 989, 992
FokI GGATG 4 cut(s) 106, 170, 470, 581
Fsp4HI GCNGC 5 cut(s) 549, 857, 919, 989, 992
FspBI CTAG 2 cut(s) 63, 237
GlaI GCGC 2 cut(s) 269, 888
GluI GCNGC 5 cut(s) 549, 857, 919, 989, 992
HaeII RGCGCY 1 cut(s) 890
HaeIII GGCC 1 cut(s) 322
HapII CCGG 4 cut(s) 291, 482, 499, 722
HgaI GACGC 1 cut(s) 71
HhaI GCGC 2 cut(s) 270, 889
Hin1II CATG 4 cut(s) 300, 305, 443, 740
Hin6I GCGC 2 cut(s) 268, 887
HinP1I GCGC 2 cut(s) 268, 887
HinfI GANTC 4 cut(s) 751, 781, 1034, 1071
HpaII CCGG 4 cut(s) 291, 482, 499, 722
HphI GGTGA 2 cut(s) 457, 520
Hpy166II GTNNAC 1 cut(s) 465
Hpy188I TCNGA 7 cut(s) 41, 138, 374, 636, 652, 756, 1014
Hpy188III TCNNGA 5 cut(s) 49, 364, 722, 737, 926
Hpy8I GTNNAC 1 cut(s) 465
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 4 cut(s) 139, 379, 397, 406
HpyCH4III ACNGT 2 cut(s) 594, 641
HpyCH4V TGCA 1 cut(s) 201
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 833, 865, 895
Hsp92II CATG 4 cut(s) 300, 305, 443, 740
HspAI GCGC 2 cut(s) 268, 887
Kpn2I TCCGGA 1 cut(s) 721
Ksp22I TGATCA 1 cut(s) 709
Kzo9I GATC 7 cut(s) 4, 138, 186, 709, 839, 958, 1087
LguI GCTCTTC 1 cut(s) 619
Lsp1109I GCAGC 4 cut(s) 868, 930, 1000, 1003
LweI GCATC 1 cut(s) 664
MaeI CTAG 2 cut(s) 63, 237
MaeIII GTNAC 2 cut(s) 46, 357
MalI GATC 7 cut(s) 6, 140, 188, 711, 841, 960, 1089
MboI GATC 7 cut(s) 4, 138, 186, 709, 839, 958, 1087
MboII GAAGA 9 cut(s) 97, 223, 356, 394, 636, 681, 960, 963, 1097
MflI RGATCY 1 cut(s) 186
MhlI GDGCHC 1 cut(s) 438
MluCI AATT 1 cut(s) 11
MlyI GAGTC 1 cut(s) 1065
MmeI TCCRAC 1 cut(s) 19
MroI TCCGGA 1 cut(s) 721
MroXI GAANNNNTTC 1 cut(s) 729
MseI TTAA 3 cut(s) 251, 452, 471
MslI CAYNNNNRTG 3 cut(s) 441, 981, 1119
MspI CCGG 4 cut(s) 291, 482, 499, 722
MspR9I CCNGG 1 cut(s) 215
Mva1269I GAATGC 1 cut(s) 517
MvaI CCWGG 1 cut(s) 215
MvnI CGCG 1 cut(s) 268
MwoI GCNNNNNNNGC 4 cut(s) 23, 833, 865, 895
NcoI CCATGG 1 cut(s) 439
NdeII GATC 7 cut(s) 4, 138, 186, 709, 839, 958, 1087
NlaIII CATG 4 cut(s) 300, 305, 443, 740
NlaIV GGNNCC 3 cut(s) 289, 720, 906
NmuCI GTSAC 2 cut(s) 46, 357
OliI CACNNNNGTG 1 cut(s) 441
PagI TCATGA 1 cut(s) 736
PaqCI CACCTGC 1 cut(s) 1058
PciSI GCTCTTC 1 cut(s) 619
PctI GAATGC 1 cut(s) 517
PdmI GAANNNNTTC 1 cut(s) 729
PfeI GAWTC 3 cut(s) 751, 781, 1034
PinAI ACCGGT 1 cut(s) 290
PkrI GCNGC 5 cut(s) 550, 858, 920, 990, 993
PleI GAGTC 1 cut(s) 1065
PpsI GAGTC 1 cut(s) 1065
PpuMI RGGWCCY 1 cut(s) 905
Psp5II RGGWCCY 1 cut(s) 905
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 3 cut(s) 289, 720, 906
PspPI GGNCC 1 cut(s) 905
PspPPI RGGWCCY 1 cut(s) 905
PstNI CAGNNNCTG 1 cut(s) 754
PsuI RGATCY 1 cut(s) 186
RsaI GTAC 4 cut(s) 295, 497, 935, 942
RsaNI GTAC 4 cut(s) 294, 496, 934, 941
RseI CAYNNNNRTG 3 cut(s) 441, 981, 1119
SapI GCTCTTC 1 cut(s) 619
SaqAI TTAA 3 cut(s) 251, 452, 471
SatI GCNGC 5 cut(s) 549, 857, 919, 989, 992
Sau3AI GATC 7 cut(s) 4, 138, 186, 709, 839, 958, 1087
Sau96I GGNCC 1 cut(s) 905
SchI GAGTC 1 cut(s) 1065
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 1 cut(s) 438
SfaNI GCATC 1 cut(s) 664
SinI GGWCC 1 cut(s) 905
SmiMI CAYNNNNRTG 3 cut(s) 441, 981, 1119
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
Sse9I AATT 1 cut(s) 11
SsiI CCGC 1 cut(s) 548
SspI AATATT 1 cut(s) 878
SspMI CTAG 2 cut(s) 63, 237
StyD4I CCNGG 1 cut(s) 213
StyI CCWWGG 1 cut(s) 439
TaaI ACNGT 2 cut(s) 594, 641
TaqI TCGA 2 cut(s) 838, 1041
TasI AATT 1 cut(s) 11
TatI WGTACW 1 cut(s) 940
TauI GCSGC 1 cut(s) 551
TfiI GAWTC 3 cut(s) 751, 781, 1034
Tru1I TTAA 3 cut(s) 251, 452, 471
Tru9I TTAA 3 cut(s) 251, 452, 471
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 2 cut(s) 46, 357
TseI GCWGC 4 cut(s) 856, 918, 988, 991
Tsp45I GTSAC 2 cut(s) 46, 357
TspDTI ATGAA 5 cut(s) 211, 318, 357, 689, 1098
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 905
XmnI GAANNNNTTC 1 cut(s) 729
XspI CTAG 2 cut(s) 63, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.