FvH4_6g40020

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000636
Physical Location & Seq
Forward (+)
31600569 .. 31601720
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40020.t1

Sequence Viewer

Length: 1152 bp
ATGGATCAGTTCGCCACTCTTGACGAACTCAATGTCGGTGTGGTGACGACGTTTCAACCTAGCGAAACCGAGTTGTTGGGTTATCTATACGACAAGGTCTTCATCGCAACCTACAAGCAGACCTTCCCTGAGATCTGTATCTACGGCAAGGATGCGTTACCTCCATGGGAGTTATGGAGAATGTATCAGCAATCCAAGTTTTCTCACCAGGATTTCATTTACTTCTTCTCCCGTGCTGAAAAGCTCAACCCTAACAAGTCACGCAACTCTCGCAGACTTGGCACTGATGGCGAACTTGGCACATGGAGTGCGACTGAAAAGTTCAAGCCCATCTATGTCGATGGCGTTCAGGAGGCGTTTGGGTCACTGAGGAAGTTCCGATACGAGAAGAGTACTAGCAGGAACGACAAGGACAAGAATGAGAAGAACAAGAATAATGTCCACACACAGATTTGTGATGAGCACCATGGTGCTTGGTTAATGGATGAGTTCACCATTAAGCATGCACCGGATCTAGCTCTGTGCCGAATCAAAGTGAACGACAAAGGAGGAGATAGAAACAAGAGGGCTGAGAAAAATGATGAGGATGAGAGTTTGAGAAGCAAAAAAAGAAAACTTGAACCCAGAACATCAGTTCAAAACAGTTGCATGTCTGAGCAACAAGGAGGCACTACTTCTCAGCAAATGCCCTCTTCCTATTTTCATCAAGATGATCAAGTGGCTCAGGTGGTTCCGGAAAACAGTTGCAACAACTTTCCTGATGAGCTTGAGCAGATACTGATGAGTAATGATGATGAGAATCTAGTTTTCTCTCCCAGTACTGTACTGTTGAATGATGCTCAGCTTTGGTCTTCTATTGCCCAATCAATACCTAATGAGCAGCAACCAATTCAAGAGCAATATTCGGATTATTCAGTAGCACCACAACAGCAGTTGGAACCTGAGAGTAGGTGTCAAGAGGAGTACCAAGTACAACTACCACAACAAGATCAAGCCTCTTCCTCTCATTCTAATATGCAGCAGCTTCTTGCTGATAACGATCTGATGATAGATTTTGATTCACTTGATGACACCTACTTACAGTCATTCATCAAAGGAATCCTTGCTGATGAAGATCAGCCAAGCACTGATGGTGATCAGTTTCAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

384

Amino Acids

44.18

Weight (kDa)

4.64

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 17 - 165 1.9e-12 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 733
AclWI GGATC 2 cut(s) 12, 519
AfaI GTAC 5 cut(s) 394, 820, 825, 965, 972
AgsI TTSAA 6 cut(s) 56, 325, 620, 638, 832, 893
AjnI CCWGG 1 cut(s) 207
AleI CACNNNNGTG 1 cut(s) 468
AluBI AGCT 5 cut(s) 244, 518, 766, 844, 1024
AluI AGCT 5 cut(s) 244, 518, 766, 844, 1024
Alw21I GWGCWC 1 cut(s) 465
AlwI GGATC 2 cut(s) 12, 519
AlwNI CAGNNNCTG 1 cut(s) 778
Aor13HI TCCGGA 1 cut(s) 733
ApeKI GCWGC 3 cut(s) 880, 1018, 1021
ArsI GACNNNNNNTTYG 2 cut(s) 18, 50
AsuHPI GGTGA 4 cut(s) 55, 197, 484, 1145
BarI GAAGNNNNNNTAC 2 cut(s) 365, 397
BbsI GAAGAC 2 cut(s) 91, 843
Bbv12I GWGCWC 1 cut(s) 465
BbvI GCAGC 3 cut(s) 892, 1030, 1033
BccI CCATC 4 cut(s) 281, 335, 338, 1124
BceAI ACGGC 1 cut(s) 160
BciT130I CCWGG 1 cut(s) 209
BclI TGATCA 2 cut(s) 712, 1135
BfaI CTAG 4 cut(s) 60, 396, 515, 803
BglII AGATCT 1 cut(s) 132
BisI GCNGC 3 cut(s) 881, 1019, 1022
BlpI GCTNAGC 1 cut(s) 840
BlsI GCNGC 3 cut(s) 882, 1020, 1023
BmcAI AGTACT 2 cut(s) 394, 820
Bme1390I CCNGG 1 cut(s) 209
BmiI GGNNCC 2 cut(s) 732, 939
BmrFI CCNGG 1 cut(s) 209
BmrI ACTGGG 1 cut(s) 810
BmsI GCATC 2 cut(s) 142, 826
BmuI ACTGGG 1 cut(s) 810
BpiI GAAGAC 2 cut(s) 91, 843
Bpu10I CCTNAGC 1 cut(s) 723
Bpu1102I GCTNAGC 1 cut(s) 840
BpuEI CTTGAG 1 cut(s) 788
BsaBI GATNNNNATC 5 cut(s) 137, 798, 1038, 1113, 1134
BsaJI CCNNGG 2 cut(s) 164, 466
BsaWI WCCGGW 2 cut(s) 508, 733
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bse1I ACTGG 1 cut(s) 816
Bse8I GATNNNNATC 5 cut(s) 137, 798, 1038, 1113, 1134
BseAI TCCGGA 1 cut(s) 733
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 2 cut(s) 164, 466
BseGI GGATG 3 cut(s) 157, 490, 592
BseJI GATNNNNATC 5 cut(s) 137, 798, 1038, 1113, 1134
BseMII CTCAG 8 cut(s) 120, 359, 561, 645, 692, 737, 854, 933
BseNI ACTGG 1 cut(s) 816
BseRI GAGGAG 2 cut(s) 564, 974
BseXI GCAGC 3 cut(s) 892, 1030, 1033
BsiHKAI GWGCWC 1 cut(s) 465
BsiSI CCGG 2 cut(s) 509, 734
Bsp1286I GDGCHC 1 cut(s) 465
Bsp13I TCCGGA 1 cut(s) 733
Bsp143I GATC 8 cut(s) 4, 132, 511, 712, 988, 1039, 1114, 1135
Bsp1720I GCTNAGC 1 cut(s) 840
Bsp19I CCATGG 2 cut(s) 164, 466
BspCNI CTCAG 8 cut(s) 121, 360, 562, 646, 691, 736, 853, 934
BspEI TCCGGA 1 cut(s) 733
BspLI GGNNCC 2 cut(s) 732, 939
BspPI GGATC 2 cut(s) 12, 519
BsrI ACTGG 1 cut(s) 816
BssECI CCNNGG 2 cut(s) 164, 466
BssMI GATC 8 cut(s) 4, 132, 511, 712, 988, 1039, 1114, 1135
BssT1I CCWWGG 2 cut(s) 164, 466
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 5 cut(s) 644, 743, 823, 828, 1083
Bst6I CTCTTC 3 cut(s) 383, 697, 1003
BstC8I GCNNGC 1 cut(s) 504
BstDEI CTNAG 8 cut(s) 129, 368, 570, 654, 678, 723, 840, 942
BstDSI CCRYGG 2 cut(s) 164, 466
BstF5I GGATG 3 cut(s) 157, 490, 592
BstKTI GATC 8 cut(s) 7, 135, 514, 715, 991, 1042, 1117, 1138
BstMBI GATC 8 cut(s) 4, 132, 511, 712, 988, 1039, 1114, 1135
BstMWI GCNNNNNNNGC 4 cut(s) 270, 279, 288, 297
BstNI CCWGG 1 cut(s) 209
BstNSI RCATGY 2 cut(s) 506, 652
BstSCI CCNGG 1 cut(s) 207
BstV1I GCAGC 3 cut(s) 892, 1030, 1033
BstV2I GAAGAC 2 cut(s) 91, 843
BstX2I RGATCY 2 cut(s) 132, 511
BstYI RGATCY 2 cut(s) 132, 511
BtgI CCRYGG 2 cut(s) 164, 466
BtgZI GCGATG 1 cut(s) 88
BtsCI GGATG 3 cut(s) 157, 490, 592
BtsIMutI CAGTG 3 cut(s) 282, 365, 1125
Cac8I GCNNGC 1 cut(s) 504
CaiI CAGNNNCTG 1 cut(s) 778
Csp6I GTAC 5 cut(s) 393, 819, 824, 964, 971
CviAII CATG 5 cut(s) 165, 303, 467, 503, 649
CviQI GTAC 5 cut(s) 393, 819, 824, 964, 971
DdeI CTNAG 8 cut(s) 129, 368, 570, 654, 678, 723, 840, 942
DpnI GATC 8 cut(s) 6, 134, 513, 714, 990, 1041, 1116, 1137
DpnII GATC 8 cut(s) 4, 132, 511, 712, 988, 1039, 1114, 1135
Eam1104I CTCTTC 3 cut(s) 383, 697, 1003
EarI CTCTTC 3 cut(s) 383, 697, 1003
Eco130I CCWWGG 2 cut(s) 164, 466
EcoRII CCWGG 1 cut(s) 207
EcoT14I CCWWGG 2 cut(s) 164, 466
ErhI CCWWGG 2 cut(s) 164, 466
FaeI CATG 5 cut(s) 168, 306, 470, 506, 652
FaiI YATR 9 cut(s) 88, 166, 175, 304, 336, 468, 504, 650, 1016
FalI AAGNNNNNCTT 4 cut(s) 107, 139, 1086, 1118
FatI CATG 5 cut(s) 164, 302, 466, 502, 648
FbaI TGATCA 2 cut(s) 712, 1135
Fnu4HI GCNGC 3 cut(s) 881, 1019, 1022
FokI GGATG 3 cut(s) 164, 497, 599
Fsp4HI GCNGC 3 cut(s) 881, 1019, 1022
FspBI CTAG 4 cut(s) 60, 396, 515, 803
GluI GCNGC 3 cut(s) 881, 1019, 1022
HapII CCGG 2 cut(s) 509, 734
Hin1II CATG 5 cut(s) 168, 306, 470, 506, 652
HinfI GANTC 4 cut(s) 528, 799, 1058, 1098
HpaII CCGG 2 cut(s) 509, 734
HphI GGTGA 4 cut(s) 55, 197, 484, 1145
Hpy166II GTNNAC 3 cut(s) 442, 492, 538
Hpy188I TCNGA 4 cut(s) 380, 655, 907, 1044
Hpy188III TCNNGA 7 cut(s) 20, 350, 707, 734, 758, 893, 956
Hpy8I GTNNAC 3 cut(s) 442, 492, 538
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 5 cut(s) 644, 743, 823, 828, 1083
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 4 cut(s) 506, 648, 747, 1018
HpyF10VI GCNNNNNNNGC 4 cut(s) 270, 279, 288, 297
HpyF3I CTNAG 8 cut(s) 129, 368, 570, 654, 678, 723, 840, 942
HpySE526I ACGT 1 cut(s) 50
Hsp92II CATG 5 cut(s) 168, 306, 470, 506, 652
Kpn2I TCCGGA 1 cut(s) 733
Ksp22I TGATCA 2 cut(s) 712, 1135
Kzo9I GATC 8 cut(s) 4, 132, 511, 712, 988, 1039, 1114, 1135
Lsp1109I GCAGC 3 cut(s) 892, 1030, 1033
LweI GCATC 2 cut(s) 142, 826
MaeI CTAG 4 cut(s) 60, 396, 515, 803
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 4 cut(s) 43, 156, 258, 363
MalI GATC 8 cut(s) 6, 134, 513, 714, 990, 1041, 1116, 1137
MboI GATC 8 cut(s) 4, 132, 511, 712, 988, 1039, 1114, 1135
MboII GAAGA 8 cut(s) 91, 217, 400, 436, 684, 843, 990, 1124
MflI RGATCY 2 cut(s) 132, 511
MhlI GDGCHC 1 cut(s) 465
MluCI AATT 1 cut(s) 888
MmeI TCCRAC 1 cut(s) 915
MroI TCCGGA 1 cut(s) 733
MseI TTAA 2 cut(s) 479, 498
MslI CAYNNNNRTG 2 cut(s) 468, 708
MspI CCGG 2 cut(s) 509, 734
MspR9I CCNGG 1 cut(s) 209
MvaI CCWGG 1 cut(s) 209
MwoI GCNNNNNNNGC 4 cut(s) 270, 279, 288, 297
NcoI CCATGG 2 cut(s) 164, 466
NdeII GATC 8 cut(s) 4, 132, 511, 712, 988, 1039, 1114, 1135
NlaIII CATG 5 cut(s) 168, 306, 470, 506, 652
NlaIV GGNNCC 2 cut(s) 732, 939
NmuCI GTSAC 3 cut(s) 43, 258, 363
NspI RCATGY 2 cut(s) 506, 652
OliI CACNNNNGTG 1 cut(s) 468
PaeI GCATGC 1 cut(s) 506
PfeI GAWTC 4 cut(s) 528, 799, 1058, 1098
PflFI GACNNNGTC 1 cut(s) 95
PkrI GCNGC 3 cut(s) 882, 1020, 1023
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 2 cut(s) 732, 939
PstNI CAGNNNCTG 1 cut(s) 778
PsuI RGATCY 2 cut(s) 132, 511
PsyI GACNNNGTC 1 cut(s) 95
RsaI GTAC 5 cut(s) 394, 820, 825, 965, 972
RsaNI GTAC 5 cut(s) 393, 819, 824, 964, 971
RseI CAYNNNNRTG 2 cut(s) 468, 708
SaqAI TTAA 2 cut(s) 479, 498
SatI GCNGC 3 cut(s) 881, 1019, 1022
Sau3AI GATC 8 cut(s) 4, 132, 511, 712, 988, 1039, 1114, 1135
ScaI AGTACT 2 cut(s) 394, 820
ScrFI CCNGG 1 cut(s) 209
SduI GDGCHC 1 cut(s) 465
SfaNI GCATC 2 cut(s) 142, 826
SmiMI CAYNNNNRTG 2 cut(s) 468, 708
SmlI CTYRAG 1 cut(s) 767
SmoI CTYRAG 1 cut(s) 767
SphI GCATGC 1 cut(s) 506
Sse9I AATT 1 cut(s) 888
SspI AATATT 1 cut(s) 902
SspMI CTAG 4 cut(s) 60, 396, 515, 803
StyD4I CCNGG 1 cut(s) 207
StyI CCWWGG 2 cut(s) 164, 466
TaaI ACNGT 5 cut(s) 644, 743, 823, 828, 1083
TaiI ACGT 1 cut(s) 53
TaqI TCGA 1 cut(s) 339
TasI AATT 1 cut(s) 888
TatI WGTACW 4 cut(s) 392, 818, 823, 970
TfiI GAWTC 4 cut(s) 528, 799, 1058, 1098
Tru1I TTAA 2 cut(s) 479, 498
Tru9I TTAA 2 cut(s) 479, 498
TscAI CASTG 3 cut(s) 289, 372, 1132
TseFI GTSAC 3 cut(s) 43, 258, 363
TseI GCWGC 3 cut(s) 880, 1018, 1021
Tsp45I GTSAC 3 cut(s) 43, 258, 363
TspDTI ATGAA 5 cut(s) 91, 205, 692, 1078, 1125
TspRI CASTG 3 cut(s) 289, 372, 1132
Tth111I GACNNNGTC 1 cut(s) 95
XceI RCATGY 2 cut(s) 506, 652
XcmI CCANNNNNNNNNTGG 1 cut(s) 171
XspI CTAG 4 cut(s) 60, 396, 515, 803
ZrmI AGTACT 2 cut(s) 394, 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.