Rh5BG308200
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000636
Physical Location & Seq
Reverse (-)
40189002 .. 40190053
1052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG308200.1

Sequence Viewer

Length: 966 bp
ATGGCTTCTTCTTCTTCTTCTTCAATTTCTTGTTTCATGAGCCTGGAAGACCTTGATGTGGGGGTTGTGAAAACATTCCACCCCACTGATTCTGATTTAGTGGGAAGCTATCTCTACAACATAATCAAATCCCCAACCCAATTGGAAAACAAACATTCCCTGAGATTGAAATATATGGCACCACAGAAATTGCGTTCCCGCTGTTTTCACAGAATTGGCTGCGATGGGGGCACATGGAGCGAGACTGAAGCTGCTAAACCTGTCTATGTCAGTGGAATTGAAGAGCCTTATGGGAAACTAAGGAAATTTATATATGAAAACAACAAAGACAAAGGCTGTGAACACCATGCTGCTTGGTTGATGGATGAGTTCACCATCAACCAAGCACCCGATTTGGCTTTGTGCCGACTCAAAGTCAATGACAAAGGAGGAGGAAGAAAAAAGAGGAAGAAGAGTTCTGATGAGACTAATGAGGATGAGAATCACAGAAAGACAATGACTTTCAAAAACCGAAAACTTGAACCGAAAAGAGTTCAAGTTCAAAACAACATGTGTGAGCAACAAAAGGGGAGTGCCTCATTTAGTAGTACTAGCACTACACAGCAACTGCCCCCACAATGTGATGATCATGATTACTGTGTGGATGAGAACCTAGTGTTCTCTCCAACTGGCTTGGTTGATGATTATCATGACATTTTGAATAGTGATCAGTTTATGGCTTCTCTTGATCAATGGTATGAGGAACAACAACAACAGTTTTCGGATTCTTCACTACTAGTGCCGCAACAACAAGTAGAACCTAACAACAGTTGTGAGGAACAACAACAGCAACAAGATGAGCAAAAATTGCGGCCTTCTCCCTCTCTTGTACACGAGCAGCAGCTCTGTGGTGGTTTTGATCTGATGGTTTATGGTTATCAGGACCCTGATATTGCACTCGATACTCCCTACTTACAGTCTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

321

Amino Acids

36.65

Weight (kDa)

5.06

Isoelectric Point (pI)

57.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 178
AciI CCGC 3 cut(s) 199, 782, 850
AcsI RAATTY 1 cut(s) 305
AcuI CTGAAG 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 620
AfaI GTAC 2 cut(s) 589, 870
AfiI CCNNNNNNNGG 1 cut(s) 58
AflIII ACRYGT 1 cut(s) 549
AgsI TTSAA 8 cut(s) 24, 169, 281, 505, 521, 536, 542, 700
AhdI GACNNNNNGTC 1 cut(s) 413
AhlI ACTAGT 1 cut(s) 775
AjnI CCWGG 1 cut(s) 42
AloI GAACNNNNNNTCC 2 cut(s) 439, 471
AluBI AGCT 3 cut(s) 108, 251, 883
AluI AGCT 3 cut(s) 108, 251, 883
Alw26I GTCTC 2 cut(s) 236, 458
AlwNI CAGNNNCTG 1 cut(s) 607
AoxI GGCC 1 cut(s) 851
ApeKI GCWGC 5 cut(s) 219, 251, 350, 877, 880
ApoI RAATTY 1 cut(s) 305
Asp700I GAANNNNTTC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 922
AsuHPI GGTGA 1 cut(s) 364
AvaII GGWCC 1 cut(s) 922
BaeGI GKGCMC 1 cut(s) 233
BanI GGYRCC 1 cut(s) 178
BauI CACGAG 1 cut(s) 872
BbsI GAAGAC 1 cut(s) 54
BbvI GCAGC 5 cut(s) 206, 238, 337, 889, 892
BccI CCATC 4 cut(s) 218, 355, 383, 898
BciT130I CCWGG 1 cut(s) 44
BclI TGATCA 3 cut(s) 625, 706, 727
BcoDI GTCTC 2 cut(s) 236, 458
BcuI ACTAGT 1 cut(s) 775
BfaI CTAG 3 cut(s) 591, 653, 776
BisI GCNGC 7 cut(s) 220, 252, 351, 782, 851, 878, 881
BlsI GCNGC 7 cut(s) 221, 253, 352, 783, 852, 879, 882
BmcAI AGTACT 1 cut(s) 589
Bme1390I CCNGG 1 cut(s) 44
Bme18I GGWCC 1 cut(s) 922
BmeRI GACNNNNNGTC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 922
BmiI GGNNCC 2 cut(s) 180, 924
BmrFI CCNGG 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 54
BsaBI GATNNNNATC 2 cut(s) 480, 684
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse1I ACTGG 1 cut(s) 673
Bse8I GATNNNNATC 2 cut(s) 480, 684
BseBI CCWGG 1 cut(s) 44
BseGI GGATG 3 cut(s) 370, 481, 649
BseJI GATNNNNATC 2 cut(s) 480, 684
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 673
BseRI GAGGAG 1 cut(s) 444
BseSI GKGCMC 1 cut(s) 233
BseXI GCAGC 5 cut(s) 206, 238, 337, 889, 892
BshFI GGCC 1 cut(s) 853
BshNI GGYRCC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 2 cut(s) 236, 458
BsnI GGCC 1 cut(s) 853
Bsp1286I GDGCHC 1 cut(s) 233
Bsp1407I TGTACA 1 cut(s) 868
Bsp143I GATC 4 cut(s) 625, 706, 727, 898
BspACI CCGC 3 cut(s) 199, 782, 850
BspANI GGCC 1 cut(s) 853
BspCNI CTCAG 1 cut(s) 153
BspHI TCATGA 3 cut(s) 36, 628, 688
BspLI GGNNCC 2 cut(s) 180, 924
BspQI GCTCTTC 1 cut(s) 276
BspT107I GGYRCC 1 cut(s) 178
BsrGI TGTACA 1 cut(s) 868
BsrI ACTGG 1 cut(s) 673
BssMI GATC 4 cut(s) 625, 706, 727, 898
BssSI CACGAG 1 cut(s) 872
Bst2BI CACGAG 1 cut(s) 872
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 4 cut(s) 638, 756, 809, 957
Bst6I CTCTTC 2 cut(s) 276, 446
BstAPI GCANNNNNTGC 1 cut(s) 847
BstAUI TGTACA 1 cut(s) 868
BstDEI CTNAG 2 cut(s) 161, 299
BstF5I GGATG 3 cut(s) 370, 481, 649
BstKTI GATC 4 cut(s) 628, 709, 730, 901
BstMAI GTCTC 2 cut(s) 236, 458
BstMBI GATC 4 cut(s) 625, 706, 727, 898
BstMWI GCNNNNNNNGC 3 cut(s) 228, 237, 847
BstNI CCWGG 1 cut(s) 44
BstNSI RCATGY 1 cut(s) 553
BstSCI CCNGG 1 cut(s) 42
BstSLI GKGCMC 1 cut(s) 233
BstV1I GCAGC 5 cut(s) 206, 238, 337, 889, 892
BstV2I GAAGAC 1 cut(s) 54
BsuRI GGCC 1 cut(s) 853
BtgZI GCGATG 1 cut(s) 237
BtsCI GGATG 3 cut(s) 370, 481, 649
BtsIMutI CAGTG 2 cut(s) 84, 277
CaiI CAGNNNCTG 1 cut(s) 607
CciI TCATGA 3 cut(s) 36, 628, 688
Cfr13I GGNCC 1 cut(s) 922
Csp6I GTAC 2 cut(s) 588, 869
CspCI CAANNNNNGTGG 2 cut(s) 171, 206
CviAII CATG 6 cut(s) 37, 234, 347, 550, 629, 689
CviQI GTAC 2 cut(s) 588, 869
DdeI CTNAG 2 cut(s) 161, 299
DpnI GATC 4 cut(s) 627, 708, 729, 900
DpnII GATC 4 cut(s) 625, 706, 727, 898
DraIII CACNNNGTG 1 cut(s) 620
DriI GACNNNNNGTC 1 cut(s) 413
Eam1104I CTCTTC 2 cut(s) 276, 446
Eam1105I GACNNNNNGTC 1 cut(s) 413
EarI CTCTTC 2 cut(s) 276, 446
Eco47I GGWCC 1 cut(s) 922
Eco57I CTGAAG 1 cut(s) 267
EcoO109I RGGNCCY 1 cut(s) 922
EcoRII CCWGG 1 cut(s) 42
FaeI CATG 6 cut(s) 40, 237, 350, 553, 632, 692
FatI CATG 6 cut(s) 36, 233, 346, 549, 628, 688
FauI CCCGC 1 cut(s) 206
FbaI TGATCA 3 cut(s) 625, 706, 727
Fnu4HI GCNGC 7 cut(s) 220, 252, 351, 782, 851, 878, 881
FokI GGATG 3 cut(s) 377, 488, 656
Fsp4HI GCNGC 7 cut(s) 220, 252, 351, 782, 851, 878, 881
FspBI CTAG 3 cut(s) 591, 653, 776
GluI GCNGC 7 cut(s) 220, 252, 351, 782, 851, 878, 881
HaeIII GGCC 1 cut(s) 853
Hin1II CATG 6 cut(s) 40, 237, 350, 553, 632, 692
HinfI GANTC 4 cut(s) 89, 408, 481, 764
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 3 cut(s) 341, 372, 871
Hpy188I TCNGA 5 cut(s) 94, 460, 763, 903, 961
Hpy188III TCNNGA 5 cut(s) 37, 629, 689, 725, 920
Hpy8I GTNNAC 3 cut(s) 341, 372, 871
HpyAV CCTTC 1 cut(s) 864
HpyCH4III ACNGT 4 cut(s) 638, 756, 809, 957
HpyCH4V TGCA 1 cut(s) 935
HpyF10VI GCNNNNNNNGC 3 cut(s) 228, 237, 847
HpyF3I CTNAG 2 cut(s) 161, 299
Hsp92II CATG 6 cut(s) 40, 237, 350, 553, 632, 692
Ksp22I TGATCA 3 cut(s) 625, 706, 727
Kzo9I GATC 4 cut(s) 625, 706, 727, 898
LguI GCTCTTC 1 cut(s) 276
LmnI GCTCC 1 cut(s) 237
LpnPI CCDG 7 cut(s) 29, 56, 173, 273, 654, 905, 939
Lsp1109I GCAGC 5 cut(s) 206, 238, 337, 889, 892
MaeI CTAG 3 cut(s) 591, 653, 776
MalI GATC 4 cut(s) 627, 708, 729, 900
MboI GATC 4 cut(s) 625, 706, 727, 898
MfeI CAATTG 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 7 cut(s) 24, 140, 188, 213, 276, 305, 845
MlyI GAGTC 1 cut(s) 402
MmeI TCCRAC 1 cut(s) 689
MnlI CCTC 8 cut(s) 422, 425, 438, 466, 586, 733, 808, 871
MroXI GAANNNNTTC 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 44
MunI CAATTG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 44
MwoI GCNNNNNNNGC 3 cut(s) 228, 237, 847
NdeII GATC 4 cut(s) 625, 706, 727, 898
NlaIII CATG 6 cut(s) 40, 237, 350, 553, 632, 692
NlaIV GGNNCC 2 cut(s) 180, 924
NspI RCATGY 1 cut(s) 553
PagI TCATGA 3 cut(s) 36, 628, 688
PciI ACATGT 1 cut(s) 549
PciSI GCTCTTC 1 cut(s) 276
PdmI GAANNNNTTC 1 cut(s) 74
PfeI GAWTC 3 cut(s) 89, 481, 764
PkrI GCNGC 7 cut(s) 221, 253, 352, 783, 852, 879, 882
PleI GAGTC 1 cut(s) 402
PpsI GAGTC 1 cut(s) 402
PpuMI RGGWCCY 1 cut(s) 922
PscI ACATGT 1 cut(s) 549
Psp5II RGGWCCY 1 cut(s) 922
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 2 cut(s) 180, 924
PspPI GGNCC 1 cut(s) 922
PspPPI RGGWCCY 1 cut(s) 922
PstNI CAGNNNCTG 1 cut(s) 607
RsaI GTAC 2 cut(s) 589, 870
RsaNI GTAC 2 cut(s) 588, 869
SapI GCTCTTC 1 cut(s) 276
SatI GCNGC 7 cut(s) 220, 252, 351, 782, 851, 878, 881
Sau3AI GATC 4 cut(s) 625, 706, 727, 898
Sau96I GGNCC 1 cut(s) 922
ScaI AGTACT 1 cut(s) 589
SchI GAGTC 1 cut(s) 402
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 1 cut(s) 233
SetI ASST 7 cut(s) 54, 110, 253, 262, 654, 802, 885
SinI GGWCC 1 cut(s) 922
SpeI ACTAGT 1 cut(s) 775
Sse9I AATT 7 cut(s) 24, 140, 188, 213, 276, 305, 845
SsiI CCGC 3 cut(s) 199, 782, 850
SspMI CTAG 3 cut(s) 591, 653, 776
StyD4I CCNGG 1 cut(s) 42
TaaI ACNGT 4 cut(s) 638, 756, 809, 957
TaqI TCGA 1 cut(s) 939
TasI AATT 7 cut(s) 24, 140, 188, 213, 276, 305, 845
TatI WGTACW 2 cut(s) 587, 868
TauI GCSGC 2 cut(s) 784, 853
TfiI GAWTC 3 cut(s) 89, 481, 764
TscAI CASTG 2 cut(s) 91, 277
TseI GCWGC 5 cut(s) 219, 251, 350, 877, 880
TspDTI ATGAA 2 cut(s) 25, 330
TspRI CASTG 2 cut(s) 91, 277
VpaK11BI GGWCC 1 cut(s) 922
XapI RAATTY 1 cut(s) 305
XceI RCATGY 1 cut(s) 553
XmnI GAANNNNTTC 1 cut(s) 74
XspI CTAG 3 cut(s) 591, 653, 776
ZrmI AGTACT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.