Rh7CG484800
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000636
Physical Location & Seq
Reverse (-)
65256756 .. 65258239
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG484800.1

Sequence Viewer

Length: 975 bp
ATGGCTTCTTCTTCAATTTCTTGTTTCATGATGAGCCTAGAAGACCTTGATGTCGGTGTTGTGAAGACGTTCCACCCCACTGATTCTGATTTAGTGGGATTCTATCTCTACAACAGAATCAAATCCCCAACCCCAATTGGAGGAAAACAAACATTCCCTGAGATTGAAATATATGGCACCACAGGTTTACCACCATGGGATATTTGGAGAATTTATGAGCGTTCCAAATTTCCACATCAAGATTATATCTATTTCTTCTCCCCGGTCAAGAAGTTGGGTTCCCGCTGTTCTCGCAGAATTGGCTGCGATGGGGGCACCTGGAGCGAGACGGAAGCTGCTAAACCTGTCTATGTCAGTGGAATTGAAGAGCCTTATGGGAAACTAAGGAAGTTTAGATACGAGAACAACAAAGACAAGGGCTTTGAACACCATGCTGCTTGGTTGATGGATGAGTACACCATCAACCAAGCACCTGATCTGGTTTTGTGCCGACTCAAAGTCAATGATAAAGGGTCTGGAGGAAGAAAAAAGAGGAAGAAGAATTCTGCTGACACTAATGAGGATGAGAATCACAGAAAGACAATGTCTTTCAAAAACCGAAAACTTGAACCAAAAAGAGTTCAAGTTCAAAACAACATGTGTGAGCAACAAATGGGAAGTGCCTCATTTAGTAGTACTAGCACTACACAGCAACTGCCCCCACAATGTGATGATCATGGTTACTGTATGGATGAGAACCTACTTTTCTCTCCAACCGGCTTGGTTGATGATTATGATGACATTTTGAATAGTGATCAGTTTATGGCTTCTCTTGATCAATGGTATGAGGAACAACTACAACAGTTTTCGGATTCTTCACTACTAGTGCCGCAGCAAGAAGTAGAACCTAACAACAGTTGTGAGGAACAACAACAGCAACAAGATGAGCAGAAGCTCTGTGGTGGTTTCCTCGACTCCAACTTCTTCCTCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

324

Amino Acids

37.22

Weight (kDa)

5.07

Isoelectric Point (pI)

55.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 23 - 153 2.6e-17 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 50
AccB1I GGYRCC 2 cut(s) 176, 314
AciI CCGC 2 cut(s) 283, 869
AcsI RAATTY 3 cut(s) 210, 227, 541
AdeI CACNNNGTG 1 cut(s) 707
AfaI GTAC 2 cut(s) 455, 676
AfiI CCNNNNNNNGG 1 cut(s) 140
AflIII ACRYGT 1 cut(s) 636
AgsI TTSAA 9 cut(s) 15, 167, 365, 425, 592, 608, 623, 629, 787
AhdI GACNNNNNGTC 1 cut(s) 497
AhlI ACTAGT 1 cut(s) 862
AjnI CCWGG 1 cut(s) 317
AluBI AGCT 2 cut(s) 335, 934
AluI AGCT 2 cut(s) 335, 934
Alw26I GTCTC 1 cut(s) 320
AlwNI CAGNNNCTG 1 cut(s) 694
ApeKI GCWGC 4 cut(s) 303, 335, 434, 871
ApoI RAATTY 3 cut(s) 210, 227, 541
ArsI GACNNNNNNTTYG 2 cut(s) 404, 436
Asp700I GAANNNNTTC 1 cut(s) 68
AsuC2I CCSGG 1 cut(s) 263
BaeGI GKGCMC 1 cut(s) 317
BanI GGYRCC 2 cut(s) 176, 314
BarI GAAGNNNNNNTAC 2 cut(s) 380, 412
BbsI GAAGAC 2 cut(s) 48, 71
BbvI GCAGC 4 cut(s) 290, 322, 421, 883
BccI CCATC 3 cut(s) 302, 439, 467
BciT130I CCWGG 1 cut(s) 319
BclI TGATCA 3 cut(s) 712, 793, 814
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 1 cut(s) 320
BcuI ACTAGT 1 cut(s) 862
BfaI CTAG 4 cut(s) 38, 678, 863, 973
BisI GCNGC 5 cut(s) 304, 336, 435, 869, 872
BlsI GCNGC 5 cut(s) 305, 337, 436, 870, 873
BmcAI AGTACT 1 cut(s) 676
Bme1390I CCNGG 2 cut(s) 263, 319
BmeRI GACNNNNNGTC 1 cut(s) 497
BmiI GGNNCC 3 cut(s) 178, 280, 316
BmrFI CCNGG 2 cut(s) 263, 319
BpiI GAAGAC 2 cut(s) 48, 71
BpmI CTGGAG 2 cut(s) 340, 537
BpuMI CCSGG 1 cut(s) 263
BsaBI GATNNNNATC 1 cut(s) 567
BsaJI CCNNGG 2 cut(s) 194, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse118I RCCGGY 1 cut(s) 755
Bse8I GATNNNNATC 1 cut(s) 567
BseBI CCWGG 1 cut(s) 319
BseDI CCNNGG 2 cut(s) 194, 261
BseGI GGATG 3 cut(s) 454, 568, 736
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 1 cut(s) 140
BseMII CTCAG 1 cut(s) 150
BseSI GKGCMC 1 cut(s) 317
BseXI GCAGC 4 cut(s) 290, 322, 421, 883
BshNI GGYRCC 2 cut(s) 176, 314
BsiSI CCGG 2 cut(s) 263, 756
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 320
BsmBI CGTCTC 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 317
Bsp143I GATC 4 cut(s) 475, 712, 793, 814
Bsp19I CCATGG 1 cut(s) 194
BspACI CCGC 2 cut(s) 283, 869
BspCNI CTCAG 1 cut(s) 151
BspHI TCATGA 1 cut(s) 27
BspLI GGNNCC 3 cut(s) 178, 280, 316
BspQI GCTCTTC 1 cut(s) 360
BspT107I GGYRCC 2 cut(s) 176, 314
BsrFI RCCGGY 1 cut(s) 755
BssAI RCCGGY 1 cut(s) 755
BssECI CCNNGG 2 cut(s) 194, 261
BssMI GATC 4 cut(s) 475, 712, 793, 814
BssT1I CCWWGG 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 319
Bst4CI ACNGT 3 cut(s) 725, 843, 896
Bst6I CTCTTC 1 cut(s) 360
BstDEI CTNAG 2 cut(s) 159, 383
BstDSI CCRYGG 1 cut(s) 194
BstF5I GGATG 3 cut(s) 454, 568, 736
BstKTI GATC 4 cut(s) 478, 715, 796, 817
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 4 cut(s) 475, 712, 793, 814
BstMWI GCNNNNNNNGC 4 cut(s) 291, 300, 312, 321
BstNI CCWGG 1 cut(s) 319
BstNSI RCATGY 1 cut(s) 640
BstSCI CCNGG 2 cut(s) 261, 317
BstSLI GKGCMC 1 cut(s) 317
BstV1I GCAGC 4 cut(s) 290, 322, 421, 883
BstV2I GAAGAC 2 cut(s) 48, 71
BtgI CCRYGG 1 cut(s) 194
BtgZI GCGATG 1 cut(s) 321
BtsCI GGATG 3 cut(s) 454, 568, 736
BtsIMutI CAGTG 2 cut(s) 78, 361
CaiI CAGNNNCTG 1 cut(s) 694
CciI TCATGA 1 cut(s) 27
Cfr10I RCCGGY 1 cut(s) 755
Csp6I GTAC 2 cut(s) 454, 675
CviAII CATG 5 cut(s) 28, 195, 431, 637, 716
CviJI RGCY 9 cut(s) 5, 36, 303, 335, 370, 420, 759, 806, 934
CviKI_1 RGCY 9 cut(s) 5, 36, 303, 335, 370, 420, 759, 806, 934
CviQI GTAC 2 cut(s) 454, 675
DdeI CTNAG 2 cut(s) 159, 383
DpnI GATC 4 cut(s) 477, 714, 795, 816
DpnII GATC 4 cut(s) 475, 712, 793, 814
DraIII CACNNNGTG 1 cut(s) 707
DrdI GACNNNNNNGTC 1 cut(s) 50
DriI GACNNNNNGTC 1 cut(s) 497
DseDI GACNNNNNNGTC 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 360
Eam1105I GACNNNNNGTC 1 cut(s) 497
EarI CTCTTC 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 194
EcoRI GAATTC 1 cut(s) 541
EcoRII CCWGG 1 cut(s) 317
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
Esp3I CGTCTC 1 cut(s) 320
FaeI CATG 5 cut(s) 31, 198, 434, 640, 719
FatI CATG 5 cut(s) 27, 194, 430, 636, 715
FauI CCCGC 1 cut(s) 290
FbaI TGATCA 3 cut(s) 712, 793, 814
Fnu4HI GCNGC 5 cut(s) 304, 336, 435, 869, 872
FokI GGATG 3 cut(s) 461, 575, 743
Fsp4HI GCNGC 5 cut(s) 304, 336, 435, 869, 872
FspBI CTAG 4 cut(s) 38, 678, 863, 973
GluI GCNGC 5 cut(s) 304, 336, 435, 869, 872
GsuI CTGGAG 2 cut(s) 340, 537
HapII CCGG 2 cut(s) 263, 756
Hin1II CATG 5 cut(s) 31, 198, 434, 640, 719
HinfI GANTC 7 cut(s) 83, 99, 117, 492, 568, 851, 953
HpaII CCGG 2 cut(s) 263, 756
Hpy166II GTNNAC 2 cut(s) 188, 456
Hpy188I TCNGA 2 cut(s) 88, 850
Hpy188III TCNNGA 5 cut(s) 28, 239, 268, 516, 812
Hpy8I GTNNAC 2 cut(s) 188, 456
HpyCH4III ACNGT 3 cut(s) 725, 843, 896
HpyCH4IV ACGT 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 4 cut(s) 291, 300, 312, 321
HpyF3I CTNAG 2 cut(s) 159, 383
HpySE526I ACGT 1 cut(s) 68
Hsp92II CATG 5 cut(s) 31, 198, 434, 640, 719
Ksp22I TGATCA 3 cut(s) 712, 793, 814
Kzo9I GATC 4 cut(s) 475, 712, 793, 814
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 1 cut(s) 321
Lsp1109I GCAGC 4 cut(s) 290, 322, 421, 883
MaeI CTAG 4 cut(s) 38, 678, 863, 973
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 719
MalI GATC 4 cut(s) 477, 714, 795, 816
MboI GATC 4 cut(s) 475, 712, 793, 814
MfeI CAATTG 1 cut(s) 135
MhlI GDGCHC 1 cut(s) 317
MluCI AATT 7 cut(s) 15, 135, 210, 227, 297, 360, 541
MlyI GAGTC 2 cut(s) 486, 947
MmeI TCCRAC 1 cut(s) 776
MnlI CCTC 8 cut(s) 134, 512, 525, 553, 673, 820, 895, 959
MroXI GAANNNNTTC 1 cut(s) 68
MspA1I CMGCKG 1 cut(s) 285
MspI CCGG 2 cut(s) 263, 756
MspR9I CCNGG 2 cut(s) 263, 319
MunI CAATTG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 319
MwoI GCNNNNNNNGC 4 cut(s) 291, 300, 312, 321
NciI CCSGG 1 cut(s) 263
NcoI CCATGG 1 cut(s) 194
NdeII GATC 4 cut(s) 475, 712, 793, 814
NlaIII CATG 5 cut(s) 31, 198, 434, 640, 719
NlaIV GGNNCC 3 cut(s) 178, 280, 316
NspI RCATGY 1 cut(s) 640
PagI TCATGA 1 cut(s) 27
PciI ACATGT 1 cut(s) 636
PciSI GCTCTTC 1 cut(s) 360
PdmI GAANNNNTTC 1 cut(s) 68
PfeI GAWTC 5 cut(s) 83, 99, 117, 568, 851
PflFI GACNNNGTC 1 cut(s) 583
PkrI GCNGC 5 cut(s) 305, 337, 436, 870, 873
PleI GAGTC 2 cut(s) 486, 947
PpsI GAGTC 2 cut(s) 486, 947
PscI ACATGT 1 cut(s) 636
Psp6I CCWGG 1 cut(s) 317
PspGI CCWGG 1 cut(s) 317
PspN4I GGNNCC 3 cut(s) 178, 280, 316
PstNI CAGNNNCTG 1 cut(s) 694
PsyI GACNNNGTC 1 cut(s) 583
RsaI GTAC 2 cut(s) 455, 676
RsaNI GTAC 2 cut(s) 454, 675
SapI GCTCTTC 1 cut(s) 360
SatI GCNGC 5 cut(s) 304, 336, 435, 869, 872
Sau3AI GATC 4 cut(s) 475, 712, 793, 814
ScaI AGTACT 1 cut(s) 676
SchI GAGTC 2 cut(s) 486, 947
ScrFI CCNGG 2 cut(s) 263, 319
SduI GDGCHC 1 cut(s) 317
SpeI ACTAGT 1 cut(s) 862
Sse9I AATT 7 cut(s) 15, 135, 210, 227, 297, 360, 541
SsiI CCGC 2 cut(s) 283, 869
SspMI CTAG 4 cut(s) 38, 678, 863, 973
StyD4I CCNGG 2 cut(s) 261, 317
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 3 cut(s) 725, 843, 896
TaiI ACGT 1 cut(s) 71
TaqI TCGA 1 cut(s) 951
TasI AATT 7 cut(s) 15, 135, 210, 227, 297, 360, 541
TatI WGTACW 2 cut(s) 453, 674
TauI GCSGC 1 cut(s) 871
TfiI GAWTC 5 cut(s) 83, 99, 117, 568, 851
TscAI CASTG 2 cut(s) 85, 361
TseI GCWGC 4 cut(s) 303, 335, 434, 871
TspDTI ATGAA 1 cut(s) 16
TspGWI ACGGA 1 cut(s) 344
TspRI CASTG 2 cut(s) 85, 361
Tth111I GACNNNGTC 1 cut(s) 583
XapI RAATTY 3 cut(s) 210, 227, 541
XceI RCATGY 1 cut(s) 640
XcmI CCANNNNNNNNNTGG 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 68
XspI CTAG 4 cut(s) 38, 678, 863, 973
ZrmI AGTACT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.