Rh5DG318400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000636
Physical Location & Seq
Reverse (-)
40954464 .. 40954814
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG318400.1

Sequence Viewer

Length: 351 bp
ATGAGCCTGGAAGACCTTGATGTGGGGGTTGTGAAAACATTCCACCCCACTGATTCTGATTTAGTGGGAAGCTATCTCTACAACATAATCAAATCCCCAACCCAATTGGAAAACAAACATTCCCTGAGATTGAAATATATGGCACCACAGGTTTACCACAGTGGGATATATGGAGAATTTATGAGCCTTCCAAATTTCCACATCAAGATTATATCTATTTCTTCTCCCGGGTCAAGAAATTGCGTTCCCGCTGTTTTCACAGAATTGGCTGCGATGGGGGCACATGGAGCGAGACTGAAGCTGCTAAACCTGTCTATGTCAGTGGAATTGAAGAGCCTTATGGGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.78

Weight (kDa)

7.91

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 142
AciI CCGC 1 cut(s) 249
AcsI RAATTY 2 cut(s) 176, 193
AcuI CTGAAG 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 22
AgsI TTSAA 2 cut(s) 133, 331
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 2 cut(s) 72, 301
AluI AGCT 2 cut(s) 72, 301
Alw26I GTCTC 1 cut(s) 286
Ama87I CYCGRG 1 cut(s) 227
ApeKI GCWGC 2 cut(s) 269, 301
ApoI RAATTY 2 cut(s) 176, 193
Asp700I GAANNNNTTC 1 cut(s) 38
AsuC2I CCSGG 2 cut(s) 228, 229
AvaI CYCGRG 1 cut(s) 227
BaeGI GKGCMC 1 cut(s) 283
BanI GGYRCC 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 18
BbvI GCAGC 2 cut(s) 256, 288
BccI CCATC 1 cut(s) 268
BciT130I CCWGG 1 cut(s) 8
BcnI CCSGG 2 cut(s) 228, 229
BcoDI GTCTC 1 cut(s) 286
BisI GCNGC 2 cut(s) 270, 302
BlsI GCNGC 2 cut(s) 271, 303
Bme1390I CCNGG 3 cut(s) 8, 228, 229
BmeT110I CYCGRG 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 3 cut(s) 8, 228, 229
BpiI GAAGAC 1 cut(s) 18
BpuMI CCSGG 2 cut(s) 228, 229
BsaJI CCNNGG 1 cut(s) 227
Bsc4I CCNNNNNNNGG 1 cut(s) 22
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 227
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 116
BseSI GKGCMC 1 cut(s) 283
BseXI GCAGC 2 cut(s) 256, 288
BshNI GGYRCC 1 cut(s) 142
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 1 cut(s) 228
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 1 cut(s) 286
BsoBI CYCGRG 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 283
BspACI CCGC 1 cut(s) 249
BspCNI CTCAG 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 144
BspQI GCTCTTC 1 cut(s) 326
BspT107I GGYRCC 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 227
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 1 cut(s) 326
BstDEI CTNAG 1 cut(s) 125
BstMAI GTCTC 1 cut(s) 286
BstMWI GCNNNNNNNGC 2 cut(s) 278, 287
BstNI CCWGG 1 cut(s) 8
BstSCI CCNGG 3 cut(s) 6, 226, 227
BstSLI GKGCMC 1 cut(s) 283
BstV1I GCAGC 2 cut(s) 256, 288
BstV2I GAAGAC 1 cut(s) 18
BtgZI GCGATG 1 cut(s) 287
BtsIMutI CAGTG 3 cut(s) 48, 166, 327
Cfr9I CCCGGG 1 cut(s) 227
CviAII CATG 1 cut(s) 284
CviJI RGCY 6 cut(s) 6, 72, 186, 269, 301, 336
CviKI_1 RGCY 6 cut(s) 6, 72, 186, 269, 301, 336
DdeI CTNAG 1 cut(s) 125
Eam1104I CTCTTC 1 cut(s) 326
EarI CTCTTC 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 317
Eco88I CYCGRG 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 6
FaeI CATG 1 cut(s) 287
FatI CATG 1 cut(s) 283
FauI CCCGC 1 cut(s) 256
Fnu4HI GCNGC 2 cut(s) 270, 302
Fsp4HI GCNGC 2 cut(s) 270, 302
GluI GCNGC 2 cut(s) 270, 302
HapII CCGG 1 cut(s) 228
Hin1II CATG 1 cut(s) 287
HinfI GANTC 1 cut(s) 53
HpaII CCGG 1 cut(s) 228
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 2 cut(s) 205, 234
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 287
HpyF3I CTNAG 1 cut(s) 125
Hsp92II CATG 1 cut(s) 287
LguI GCTCTTC 1 cut(s) 326
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 5 cut(s) 20, 134, 137, 241, 323
Lsp1109I GCAGC 2 cut(s) 256, 288
MboII GAAGA 3 cut(s) 23, 213, 343
MfeI CAATTG 1 cut(s) 104
MhlI GDGCHC 1 cut(s) 283
MluCI AATT 6 cut(s) 104, 176, 193, 238, 263, 326
MroXI GAANNNNTTC 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 3 cut(s) 8, 228, 229
MunI CAATTG 1 cut(s) 104
MvaI CCWGG 1 cut(s) 8
MwoI GCNNNNNNNGC 2 cut(s) 278, 287
NciI CCSGG 2 cut(s) 228, 229
NlaIII CATG 1 cut(s) 287
NlaIV GGNNCC 1 cut(s) 144
PciSI GCTCTTC 1 cut(s) 326
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 1 cut(s) 53
PkrI GCNGC 2 cut(s) 271, 303
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 144
SapI GCTCTTC 1 cut(s) 326
SatI GCNGC 2 cut(s) 270, 302
ScrFI CCNGG 3 cut(s) 8, 228, 229
SduI GDGCHC 1 cut(s) 283
SetI ASST 5 cut(s) 18, 74, 153, 303, 312
SmaI CCCGGG 1 cut(s) 229
Sse9I AATT 6 cut(s) 104, 176, 193, 238, 263, 326
SsiI CCGC 1 cut(s) 249
StyD4I CCNGG 3 cut(s) 6, 226, 227
TaaI ACNGT 1 cut(s) 161
TasI AATT 6 cut(s) 104, 176, 193, 238, 263, 326
TfiI GAWTC 1 cut(s) 53
TscAI CASTG 3 cut(s) 55, 166, 327
TseI GCWGC 2 cut(s) 269, 301
TspMI CCCGGG 1 cut(s) 227
TspRI CASTG 3 cut(s) 55, 166, 327
XapI RAATTY 2 cut(s) 176, 193
XmaI CCCGGG 1 cut(s) 227
XmnI GAANNNNTTC 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.