Rorug05G0218600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000636
Physical Location & Seq
Reverse (-)
22462593 .. 22462805
213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0218600.1

Sequence Viewer

Length: 213 bp
ATGCATTGGCTTCCGCCTCCACATCCTTGGCTGAAGATTAATATTGATGAGTCTTTTAGAGATCCTGGCACTACGGGTTATGGAGGTATTTTACGTGATTTTGAGGACATATTTGTTTATGTTTTTGCTTCTAGAGCAAGGGTTCGTTCTACCCTTGATGCTGAAGTTATGGCGTTCCTTGAAGCCATTCACCTTGCTATGTTGAGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

8.08

Weight (kDa)

5.8

Isoelectric Point (pI)

58.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 14
AclWI GGATC 1 cut(s) 56
AcuI CTGAAG 2 cut(s) 53, 183
AgsI TTSAA 1 cut(s) 182
AjnI CCWGG 1 cut(s) 64
AlwI GGATC 1 cut(s) 56
AseI ATTAAT 1 cut(s) 39
Asp700I GAANNNNTTC 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 182
BciT130I CCWGG 1 cut(s) 66
BfaI CTAG 1 cut(s) 132
Bme1390I CCNGG 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 66
BmsI GCATC 1 cut(s) 148
BsaAI YACGTR 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 26
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 1 cut(s) 22
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 1 cut(s) 14
BspPI GGATC 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 1 cut(s) 61
BssT1I CCWWGG 1 cut(s) 26
Bst2UI CCWGG 1 cut(s) 66
BstBAI YACGTR 1 cut(s) 95
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 64
BstX2I RGATCY 1 cut(s) 61
BstXI CCANNNNNNTGG 1 cut(s) 27
BstYI RGATCY 1 cut(s) 61
BtsCI GGATG 1 cut(s) 22
CviJI RGCY 3 cut(s) 10, 31, 185
CviKI_1 RGCY 3 cut(s) 10, 31, 185
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 26
Eco57I CTGAAG 2 cut(s) 53, 183
EcoRII CCWGG 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 26
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 26
FaiI YATR 5 cut(s) 81, 110, 120, 170, 200
FokI GGATG 1 cut(s) 9
FspBI CTAG 1 cut(s) 132
HinfI GANTC 1 cut(s) 50
HphI GGTGA 1 cut(s) 182
Hpy188III TCNNGA 1 cut(s) 132
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpySE526I ACGT 1 cut(s) 94
Kzo9I GATC 1 cut(s) 61
LpnPI CCDG 2 cut(s) 51, 78
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 132
MaeII ACGT 1 cut(s) 94
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 1 cut(s) 46
MflI RGATCY 1 cut(s) 61
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 4 cut(s) 27, 77, 97, 198
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 186
MseI TTAA 1 cut(s) 39
MspR9I CCNGG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 1 cut(s) 61
NsiI ATGCAT 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 186
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Ppu21I YACGTR 1 cut(s) 95
PshBI ATTAAT 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PsuI RGATCY 1 cut(s) 61
SaqAI TTAA 1 cut(s) 39
Sau3AI GATC 1 cut(s) 61
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 66
SetI ASST 3 cut(s) 88, 97, 195
SfaNI GCATC 1 cut(s) 148
SsiI CCGC 1 cut(s) 14
SspI AATATT 1 cut(s) 43
SspMI CTAG 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 64
StyI CCWWGG 1 cut(s) 26
TaiI ACGT 1 cut(s) 97
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
VspI ATTAAT 1 cut(s) 39
XbaI TCTAGA 1 cut(s) 131
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 1 cut(s) 132
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.