Rh3BG280100
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000636
Physical Location & Seq
Reverse (-)
27653408 .. 27654352
945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG280100.1

Sequence Viewer

Length: 945 bp
ATGAGCCTAGAAGACCTTGATGTCGGTGTTGTGAAGACGTTCCACCCCACTGATTCTGATTTAGTGGGAAGCTATCTCTACAACAGAATCAAATCCCCAACCCCAATTGGAGGAAAACAAACATTCCCTGAGATTGAAATATATGGCACCACAGGTTTACCACCATGGGATATTTGGAGAATTTATGAGCCTTCCAAATTTCCACATCAAGATTATATCTATTTCTTCTCTCGGGTCAAGAAGTTGGGTTCCCGCTGTTCTCGCAGAATTGGCTGCGATGGGGGCACCTGGAGCGAGACGGAAGCTGCTAAACCTGTCTATGTCAGTGGAATTGAAGAGCCTTATGGGAAACTAAGGAAGTTTAGATACGAGAACAACAAAGACAAGGGCTTTGAACACCATGCTGCTTGGTTGATGGATGAGTACACCATCAACCAAGCACCCGATCTGGCTTTGTGCCGACTCAAAGTCAATTATAAAGGAGCTGGAGGAAGAAAAAAGAGGAAGAAGAGTTCTGCTGAGACTAATGAGGATGAGAATCACAGAAAGACAATGTCTTTCAAAAACCGAAAACTTGAACCGAAAAGAGTTCAAGTTCAAAACAACATGTGTGAGCAACAAATGGGAAGTGCCTCATTTAGTACTACTAGCACTACACAGCAACTGCCCCCACAATGTGATGATCATGGTTACTGTATGGATGAGAACCTACTTTTCTCTCCAACCGGCTTGGTTGATGATTATGATGACATTTTGAATAGTGATCAGTTTATGGCTTCTCTTGATCAATGGTATGAGGAACAAATACAACAGTTTTCGGATTCTTCACTACTAGTGCCGCAGCAAGAAGTAGAACCTAACAACAGTTGTGAGGAACAACAACAGCAACAAGATGAGCAGCAGCTCTGTGGTGGTTTCCTCGACTCCAACTTCTTCCTCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

314

Amino Acids

36.12

Weight (kDa)

5.07

Isoelectric Point (pI)

52.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 13 - 143 1.1e-16 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 477
AasI GACNNNNNNGTC 1 cut(s) 20
AccB1I GGYRCC 2 cut(s) 146, 284
AciI CCGC 2 cut(s) 253, 839
AcsI RAATTY 2 cut(s) 180, 197
AdeI CACNNNGTG 1 cut(s) 677
AfaI GTAC 2 cut(s) 425, 643
AfiI CCNNNNNNNGG 1 cut(s) 110
AflIII ACRYGT 1 cut(s) 606
AgsI TTSAA 8 cut(s) 137, 335, 395, 562, 578, 593, 599, 757
AhdI GACNNNNNGTC 1 cut(s) 467
AhlI ACTAGT 1 cut(s) 832
AjnI CCWGG 1 cut(s) 287
AloI GAACNNNNNNTCC 2 cut(s) 496, 528
AluBI AGCT 4 cut(s) 72, 305, 485, 904
AluI AGCT 4 cut(s) 72, 305, 485, 904
Alw26I GTCTC 2 cut(s) 290, 515
AlwNI CAGNNNCTG 1 cut(s) 664
Ama87I CYCGRG 1 cut(s) 231
ApeKI GCWGC 6 cut(s) 273, 305, 404, 841, 898, 901
ApoI RAATTY 2 cut(s) 180, 197
ArsI GACNNNNNNTTYG 2 cut(s) 374, 406
Asp700I GAANNNNTTC 1 cut(s) 38
AvaI CYCGRG 1 cut(s) 231
BaeGI GKGCMC 1 cut(s) 287
BanI GGYRCC 2 cut(s) 146, 284
BarI GAAGNNNNNNTAC 2 cut(s) 350, 382
BbsI GAAGAC 2 cut(s) 18, 41
BbvI GCAGC 6 cut(s) 260, 292, 391, 853, 910, 913
BccI CCATC 3 cut(s) 272, 409, 437
BciT130I CCWGG 1 cut(s) 289
BclI TGATCA 3 cut(s) 682, 763, 784
BcoDI GTCTC 2 cut(s) 290, 515
BcuI ACTAGT 1 cut(s) 832
BfaI CTAG 4 cut(s) 8, 648, 833, 943
BisI GCNGC 7 cut(s) 274, 306, 405, 839, 842, 899, 902
BlsI GCNGC 7 cut(s) 275, 307, 406, 840, 843, 900, 903
BmcAI AGTACT 1 cut(s) 643
Bme1390I CCNGG 1 cut(s) 289
BmeRI GACNNNNNGTC 1 cut(s) 467
BmeT110I CYCGRG 1 cut(s) 231
BmiI GGNNCC 3 cut(s) 148, 250, 286
BmrFI CCNGG 1 cut(s) 289
BpiI GAAGAC 2 cut(s) 18, 41
BpmI CTGGAG 2 cut(s) 310, 507
BsaBI GATNNNNATC 1 cut(s) 537
BsaJI CCNNGG 1 cut(s) 164
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse118I RCCGGY 1 cut(s) 725
Bse8I GATNNNNATC 1 cut(s) 537
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 1 cut(s) 164
BseGI GGATG 3 cut(s) 424, 538, 706
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 2 cut(s) 120, 510
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 6 cut(s) 260, 292, 391, 853, 910, 913
BshNI GGYRCC 2 cut(s) 146, 284
BsiHKCI CYCGRG 1 cut(s) 231
BsiSI CCGG 1 cut(s) 726
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 2 cut(s) 290, 515
BsmBI CGTCTC 1 cut(s) 290
BsoBI CYCGRG 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 4 cut(s) 445, 682, 763, 784
Bsp19I CCATGG 1 cut(s) 164
BspACI CCGC 2 cut(s) 253, 839
BspCNI CTCAG 2 cut(s) 121, 511
BspLI GGNNCC 3 cut(s) 148, 250, 286
BspQI GCTCTTC 1 cut(s) 330
BspT107I GGYRCC 2 cut(s) 146, 284
BsrFI RCCGGY 1 cut(s) 725
BssAI RCCGGY 1 cut(s) 725
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 4 cut(s) 445, 682, 763, 784
BssT1I CCWWGG 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 3 cut(s) 695, 813, 866
Bst6I CTCTTC 2 cut(s) 330, 503
BstDEI CTNAG 3 cut(s) 129, 353, 519
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 3 cut(s) 424, 538, 706
BstKTI GATC 4 cut(s) 448, 685, 766, 787
BstMAI GTCTC 2 cut(s) 290, 515
BstMBI GATC 4 cut(s) 445, 682, 763, 784
BstMWI GCNNNNNNNGC 4 cut(s) 261, 270, 282, 291
BstNI CCWGG 1 cut(s) 289
BstNSI RCATGY 1 cut(s) 610
BstSCI CCNGG 1 cut(s) 287
BstSLI GKGCMC 1 cut(s) 287
BstV1I GCAGC 6 cut(s) 260, 292, 391, 853, 910, 913
BstV2I GAAGAC 2 cut(s) 18, 41
BtgI CCRYGG 1 cut(s) 164
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 3 cut(s) 424, 538, 706
BtsIMutI CAGTG 2 cut(s) 48, 331
CaiI CAGNNNCTG 1 cut(s) 664
Cfr10I RCCGGY 1 cut(s) 725
Csp6I GTAC 2 cut(s) 424, 642
CviAII CATG 4 cut(s) 165, 401, 607, 686
CviQI GTAC 2 cut(s) 424, 642
DdeI CTNAG 3 cut(s) 129, 353, 519
DpnI GATC 4 cut(s) 447, 684, 765, 786
DpnII GATC 4 cut(s) 445, 682, 763, 784
DraIII CACNNNGTG 1 cut(s) 677
DrdI GACNNNNNNGTC 1 cut(s) 20
DriI GACNNNNNGTC 1 cut(s) 467
DseDI GACNNNNNNGTC 1 cut(s) 20
Eam1104I CTCTTC 2 cut(s) 330, 503
Eam1105I GACNNNNNGTC 1 cut(s) 467
EarI CTCTTC 2 cut(s) 330, 503
Eco130I CCWWGG 1 cut(s) 164
Eco88I CYCGRG 1 cut(s) 231
EcoRII CCWGG 1 cut(s) 287
EcoT14I CCWWGG 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 164
Esp3I CGTCTC 1 cut(s) 290
FaeI CATG 4 cut(s) 168, 404, 610, 689
FatI CATG 4 cut(s) 164, 400, 606, 685
FauI CCCGC 1 cut(s) 260
FbaI TGATCA 3 cut(s) 682, 763, 784
Fnu4HI GCNGC 7 cut(s) 274, 306, 405, 839, 842, 899, 902
FokI GGATG 3 cut(s) 431, 545, 713
Fsp4HI GCNGC 7 cut(s) 274, 306, 405, 839, 842, 899, 902
FspBI CTAG 4 cut(s) 8, 648, 833, 943
GluI GCNGC 7 cut(s) 274, 306, 405, 839, 842, 899, 902
GsuI CTGGAG 2 cut(s) 310, 507
HapII CCGG 1 cut(s) 726
Hin1II CATG 4 cut(s) 168, 404, 610, 689
HinfI GANTC 6 cut(s) 53, 87, 462, 538, 821, 923
HpaII CCGG 1 cut(s) 726
Hpy166II GTNNAC 2 cut(s) 158, 426
Hpy188I TCNGA 2 cut(s) 58, 820
Hpy188III TCNNGA 3 cut(s) 209, 238, 782
Hpy8I GTNNAC 2 cut(s) 158, 426
HpyAV CCTTC 1 cut(s) 201
HpyCH4III ACNGT 3 cut(s) 695, 813, 866
HpyCH4IV ACGT 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 4 cut(s) 261, 270, 282, 291
HpyF3I CTNAG 3 cut(s) 129, 353, 519
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 4 cut(s) 168, 404, 610, 689
Ksp22I TGATCA 3 cut(s) 682, 763, 784
Kzo9I GATC 4 cut(s) 445, 682, 763, 784
LguI GCTCTTC 1 cut(s) 330
LmnI GCTCC 2 cut(s) 291, 482
LpnPI CCDG 8 cut(s) 138, 141, 274, 301, 327, 434, 471, 739
Lsp1109I GCAGC 6 cut(s) 260, 292, 391, 853, 910, 913
MaeI CTAG 4 cut(s) 8, 648, 833, 943
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 689
MalI GATC 4 cut(s) 447, 684, 765, 786
MboI GATC 4 cut(s) 445, 682, 763, 784
MboII GAAGA 9 cut(s) 23, 46, 217, 347, 504, 517, 520, 816, 925
MfeI CAATTG 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 6 cut(s) 105, 180, 197, 267, 330, 472
MlyI GAGTC 2 cut(s) 456, 917
MmeI TCCRAC 1 cut(s) 746
MnlI CCTC 8 cut(s) 104, 482, 495, 523, 643, 790, 865, 929
MroXI GAANNNNTTC 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 255
MspI CCGG 1 cut(s) 726
MspR9I CCNGG 1 cut(s) 289
MunI CAATTG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 289
MwoI GCNNNNNNNGC 4 cut(s) 261, 270, 282, 291
NcoI CCATGG 1 cut(s) 164
NdeII GATC 4 cut(s) 445, 682, 763, 784
NlaIII CATG 4 cut(s) 168, 404, 610, 689
NlaIV GGNNCC 3 cut(s) 148, 250, 286
NspI RCATGY 1 cut(s) 610
PciI ACATGT 1 cut(s) 606
PciSI GCTCTTC 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 4 cut(s) 53, 87, 538, 821
PflFI GACNNNGTC 1 cut(s) 553
PkrI GCNGC 7 cut(s) 275, 307, 406, 840, 843, 900, 903
PleI GAGTC 2 cut(s) 456, 917
PpsI GAGTC 2 cut(s) 456, 917
PscI ACATGT 1 cut(s) 606
PsiI TTATAA 1 cut(s) 477
Psp6I CCWGG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 3 cut(s) 148, 250, 286
PstNI CAGNNNCTG 1 cut(s) 664
PsyI GACNNNGTC 1 cut(s) 553
RsaI GTAC 2 cut(s) 425, 643
RsaNI GTAC 2 cut(s) 424, 642
SapI GCTCTTC 1 cut(s) 330
SatI GCNGC 7 cut(s) 274, 306, 405, 839, 842, 899, 902
Sau3AI GATC 4 cut(s) 445, 682, 763, 784
ScaI AGTACT 1 cut(s) 643
SchI GAGTC 2 cut(s) 456, 917
ScrFI CCNGG 1 cut(s) 289
SduI GDGCHC 1 cut(s) 287
SpeI ACTAGT 1 cut(s) 832
Sse9I AATT 6 cut(s) 105, 180, 197, 267, 330, 472
SsiI CCGC 2 cut(s) 253, 839
SspMI CTAG 4 cut(s) 8, 648, 833, 943
StyD4I CCNGG 1 cut(s) 287
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 3 cut(s) 695, 813, 866
TaiI ACGT 1 cut(s) 41
TaqI TCGA 1 cut(s) 921
TasI AATT 6 cut(s) 105, 180, 197, 267, 330, 472
TatI WGTACW 2 cut(s) 423, 641
TauI GCSGC 1 cut(s) 841
TfiI GAWTC 4 cut(s) 53, 87, 538, 821
TscAI CASTG 2 cut(s) 55, 331
TseI GCWGC 6 cut(s) 273, 305, 404, 841, 898, 901
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 2 cut(s) 55, 331
Tth111I GACNNNGTC 1 cut(s) 553
XapI RAATTY 2 cut(s) 180, 197
XceI RCATGY 1 cut(s) 610
XcmI CCANNNNNNNNNTGG 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 4 cut(s) 8, 648, 833, 943
ZrmI AGTACT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.