Rroxscaffold_7G00204490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000636
Physical Location & Seq
Reverse (-)
53928014 .. 53928815
802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00204490.1

Sequence Viewer

Length: 396 bp
ATGGTTCAGGTTCCTCACGATGATCAGGTGGTTCATGAGCACCTCCTCCCACAATGTGGTGATTATGACCAAGTGTTTCAGGTTCATCATGATAATGAGGTGGTTCTGGAGAACAATCAGCAGCTCTTCTTTACCGATGATGATTGTATGGATGAGAATCTGATGTTCTCTCCCACCATCTTGTTTGATGGTAACGATCACATGTTGAATGCTGATCAGCTTATGGATTTTGTGGCTCAATGGTTAGCTGGTGATGAGGAACAACAACAAAATCAACAAGAGCAACAACAACTAGTGCCGCAACAGCAATTGCAACTTAACAAGAGATGTCAAGAGGAGGAACAACTACAACAACATGAGCAGCAGCAACAGCTTCTCATACTTACAGTCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

15.57

Weight (kDa)

4.05

Isoelectric Point (pI)

65.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 56
AciI CCGC 1 cut(s) 299
AdeI CACNNNGTG 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 56
AflIII ACRYGT 1 cut(s) 201
AgsI TTSAA 1 cut(s) 208
AhlI ACTAGT 1 cut(s) 292
AluBI AGCT 4 cut(s) 124, 220, 248, 373
AluI AGCT 4 cut(s) 124, 220, 248, 373
Alw21I GWGCWC 1 cut(s) 42
ApeKI GCWGC 3 cut(s) 121, 361, 364
AsuHPI GGTGA 2 cut(s) 71, 263
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 3 cut(s) 133, 373, 376
BccI CCATC 2 cut(s) 182, 185
BclI TGATCA 2 cut(s) 22, 214
BcuI ACTAGT 1 cut(s) 292
BfaI CTAG 1 cut(s) 293
BisI GCNGC 4 cut(s) 122, 299, 362, 365
BlsI GCNGC 4 cut(s) 123, 300, 363, 366
BmiI GGNNCC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 128
BsaBI GATNNNNATC 1 cut(s) 156
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse8I GATNNNNATC 1 cut(s) 156
BseGI GGATG 1 cut(s) 157
BseJI GATNNNNATC 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 56
BseRI GAGGAG 2 cut(s) 35, 350
BseXI GCAGC 3 cut(s) 133, 373, 376
BsiHKAI GWGCWC 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 56
BsmI GAATGC 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 3 cut(s) 22, 196, 214
BspACI CCGC 1 cut(s) 299
BspHI TCATGA 2 cut(s) 34, 88
BspLI GGNNCC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 131
BssMI GATC 3 cut(s) 22, 196, 214
Bst4CI ACNGT 1 cut(s) 388
Bst6I CTCTTC 1 cut(s) 131
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 3 cut(s) 25, 199, 217
BstMBI GATC 3 cut(s) 22, 196, 214
BstMWI GCNNNNNNNGC 2 cut(s) 304, 370
BstNSI RCATGY 1 cut(s) 205
BstV1I GCAGC 3 cut(s) 133, 373, 376
BtsCI GGATG 1 cut(s) 157
CciI TCATGA 2 cut(s) 34, 88
CviAII CATG 4 cut(s) 35, 89, 202, 356
CviJI RGCY 5 cut(s) 124, 220, 236, 248, 373
CviKI_1 RGCY 5 cut(s) 124, 220, 236, 248, 373
DpnI GATC 3 cut(s) 24, 198, 216
DpnII GATC 3 cut(s) 22, 196, 214
DraIII CACNNNGTG 1 cut(s) 56
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
FaeI CATG 4 cut(s) 38, 92, 205, 359
FaiI YATR 8 cut(s) 36, 66, 90, 149, 203, 224, 357, 380
FatI CATG 4 cut(s) 34, 88, 201, 355
FbaI TGATCA 2 cut(s) 22, 214
Fnu4HI GCNGC 4 cut(s) 122, 299, 362, 365
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 4 cut(s) 122, 299, 362, 365
FspBI CTAG 1 cut(s) 293
GluI GCNGC 4 cut(s) 122, 299, 362, 365
GsuI CTGGAG 1 cut(s) 128
Hin1II CATG 4 cut(s) 38, 92, 205, 359
HinfI GANTC 1 cut(s) 157
HphI GGTGA 2 cut(s) 71, 263
Hpy188I TCNGA 2 cut(s) 162, 392
Hpy188III TCNNGA 5 cut(s) 17, 35, 89, 107, 332
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4V TGCA 1 cut(s) 313
HpyF10VI GCNNNNNNNGC 2 cut(s) 304, 370
Hsp92II CATG 4 cut(s) 38, 92, 205, 359
Ksp22I TGATCA 2 cut(s) 22, 214
Kzo9I GATC 3 cut(s) 22, 196, 214
LguI GCTCTTC 1 cut(s) 131
LpnPI CCDG 4 cut(s) 11, 65, 92, 234
Lsp1109I GCAGC 3 cut(s) 133, 373, 376
MaeI CTAG 1 cut(s) 293
MaeIII GTNAC 1 cut(s) 191
MalI GATC 3 cut(s) 24, 198, 216
MboI GATC 3 cut(s) 22, 196, 214
MboII GAAGA 1 cut(s) 118
MfeI CAATTG 1 cut(s) 308
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 1 cut(s) 308
MnlI CCTC 7 cut(s) 24, 53, 56, 91, 250, 328, 331
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 1 cut(s) 93
MunI CAATTG 1 cut(s) 308
Mva1269I GAATGC 1 cut(s) 214
MwoI GCNNNNNNNGC 2 cut(s) 304, 370
NdeII GATC 3 cut(s) 22, 196, 214
NlaIII CATG 4 cut(s) 38, 92, 205, 359
NlaIV GGNNCC 1 cut(s) 12
NspI RCATGY 1 cut(s) 205
PagI TCATGA 2 cut(s) 34, 88
PciI ACATGT 1 cut(s) 201
PciSI GCTCTTC 1 cut(s) 131
PctI GAATGC 1 cut(s) 214
PfeI GAWTC 1 cut(s) 157
PflMI CCANNNNNTGG 1 cut(s) 56
PkrI GCNGC 4 cut(s) 123, 300, 363, 366
PscI ACATGT 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 93
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 4 cut(s) 122, 299, 362, 365
Sau3AI GATC 3 cut(s) 22, 196, 214
SduI GDGCHC 1 cut(s) 42
SetI ASST 9 cut(s) 12, 30, 45, 84, 102, 126, 222, 250, 375
SmiMI CAYNNNNRTG 1 cut(s) 93
SpeI ACTAGT 1 cut(s) 292
Sse9I AATT 1 cut(s) 308
SsiI CCGC 1 cut(s) 299
SspMI CTAG 1 cut(s) 293
TaaI ACNGT 1 cut(s) 388
TasI AATT 1 cut(s) 308
TauI GCSGC 1 cut(s) 301
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TseI GCWGC 3 cut(s) 121, 361, 364
TspDTI ATGAA 2 cut(s) 23, 74
Van91I CCANNNNNTGG 1 cut(s) 56
XceI RCATGY 1 cut(s) 205
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.