Rmu_sc0004277.1_g000045
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004277.1
OG0000636
Physical Location & Seq
Reverse (-)
159667 .. 160842
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004277.1_g000045.1.cds

Sequence Viewer

Length: 957 bp
atgactctggatcagcttgatgtgggtgtggtgaagacatttcagcctactgaagccgagttggtgggtttctttctatacaacaagatctccatggcctcaagctcaggcaatcagattcagacattccctaaaatttgtatatatggtgagacaggcttaccaccttgggagatatggaggatatatcagcaattcaagtttccccaccaggattttctctacttcttctcctggaccaagaaggttagccccaacaaatctcgcaactctggcacagttagctctgatgggggaacatggagagagacggaagccgctaggcctgtactaaaagtgaatgataaaggaggaggaagaaacaagaggaagtttgttgctgagaagaataaggatcagaatcaacaagaaggcggtgcttcctttgctagtactacttcacaactaattccctatcatcacgaagatgatcaagtggttcaggtggttccggagaacaattacgattatgacgagctgcagcagatcctctttagcgatgatgattctatggatgagaatctaaagttctctcccactatcttgtttgatgataatgacgacatgttgaatgatgctcagattatggcttctgttgatcaatcaatagctagtgagcaacaacgacaacaatattcggattattcacttgtgccgcaacagcaattggaacctgacagtaggtgtcaagtggaggaccaaacacaactacaacaacaagatcaaccctcttcctctcattctcatgagcagcagcagctcattggtgatgacgatctgatgatttctggccaacatgattataatattccactcgataacgacttcttatggtcagatgaatttaatggactctttactcatgaagatcagctgggagctctgccatggcgggatagtgatgatctgtttcagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

318

Amino Acids

36.52

Weight (kDa)

4.3

Isoelectric Point (pI)

49.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 843
AccIII TCCGGA 1 cut(s) 490
AciI CCGC 4 cut(s) 318, 414, 695, 931
AclWI GGATC 3 cut(s) 18, 402, 520
AcoI YGGCCR 1 cut(s) 829
AcsI RAATTY 2 cut(s) 135, 881
AcuI CTGAAG 1 cut(s) 72
AfaI GTAC 2 cut(s) 330, 433
AflIII ACRYGT 1 cut(s) 603
AgsI TTSAA 2 cut(s) 199, 610
AjnI CCWGG 2 cut(s) 210, 233
AluBI AGCT 8 cut(s) 16, 105, 285, 517, 650, 799, 913, 920
AluI AGCT 8 cut(s) 16, 105, 285, 517, 650, 799, 913, 920
Alw21I GWGCWC 1 cut(s) 922
Alw26I GTCTC 2 cut(s) 146, 302
AlwI GGATC 3 cut(s) 18, 402, 520
Aor13HI TCCGGA 1 cut(s) 490
AoxI GGCC 3 cut(s) 96, 323, 829
ApeKI GCWGC 5 cut(s) 517, 520, 790, 793, 796
ApoI RAATTY 2 cut(s) 135, 881
AspS9I GGNCC 2 cut(s) 237, 736
AsuHPI GGTGA 3 cut(s) 43, 161, 818
AvaII GGWCC 2 cut(s) 237, 736
BalI TGGCCA 1 cut(s) 831
BanII GRGCYC 1 cut(s) 922
BbsI GAAGAC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 922
BbvI GCAGC 5 cut(s) 504, 532, 802, 805, 808
BccI CCATC 1 cut(s) 284
BciT130I CCWGG 2 cut(s) 212, 235
BclI TGATCA 2 cut(s) 469, 637
BcoDI GTCTC 2 cut(s) 146, 302
BfaI CTAG 3 cut(s) 321, 429, 651
BfmI CTRYAG 1 cut(s) 518
BglII AGATCT 1 cut(s) 87
BisI GCNGC 7 cut(s) 318, 518, 521, 695, 791, 794, 797
BlsI GCNGC 7 cut(s) 319, 519, 522, 696, 792, 795, 798
BmcAI AGTACT 1 cut(s) 433
Bme1390I CCNGG 2 cut(s) 212, 235
Bme18I GGWCC 2 cut(s) 237, 736
BmgT120I GGNCC 2 cut(s) 237, 736
BmiI GGNNCC 2 cut(s) 489, 711
BmrFI CCNGG 2 cut(s) 212, 235
BmsI GCATC 1 cut(s) 604
BpiI GAAGAC 1 cut(s) 41
Bpu10I CCTNAGC 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 85
BsaBI GATNNNNATC 3 cut(s) 399, 558, 813
BsaJI CCNNGG 3 cut(s) 93, 167, 926
BsaWI WCCGGW 1 cut(s) 490
BsaXI ACNNNNNCTCC 4 cut(s) 74, 104, 215, 245
Bse8I GATNNNNATC 3 cut(s) 399, 558, 813
BseAI TCCGGA 1 cut(s) 490
BseBI CCWGG 2 cut(s) 212, 235
BseDI CCNNGG 3 cut(s) 93, 167, 926
BseGI GGATG 1 cut(s) 559
BseJI GATNNNNATC 3 cut(s) 399, 558, 813
BseMII CTCAG 3 cut(s) 120, 372, 632
BseRI GAGGAG 1 cut(s) 366
BseXI GCAGC 5 cut(s) 504, 532, 802, 805, 808
BseYI CCCAGC 1 cut(s) 913
BshFI GGCC 3 cut(s) 98, 325, 831
BsiHKAI GWGCWC 1 cut(s) 922
BsiSI CCGG 1 cut(s) 491
BsmAI GTCTC 2 cut(s) 146, 302
BsmBI CGTCTC 1 cut(s) 302
BsnI GGCC 3 cut(s) 98, 325, 831
Bsp1286I GDGCHC 1 cut(s) 922
Bsp13I TCCGGA 1 cut(s) 490
Bsp19I CCATGG 2 cut(s) 93, 926
BspACI CCGC 4 cut(s) 318, 414, 695, 931
BspANI GGCC 3 cut(s) 98, 325, 831
BspCNI CTCAG 3 cut(s) 119, 373, 631
BspEI TCCGGA 1 cut(s) 490
BspHI TCATGA 2 cut(s) 784, 901
BspLI GGNNCC 2 cut(s) 489, 711
BspMAI CTGCAG 1 cut(s) 522
BspPI GGATC 3 cut(s) 18, 402, 520
BssECI CCNNGG 3 cut(s) 93, 167, 926
BssT1I CCWWGG 3 cut(s) 93, 167, 926
Bst2UI CCWGG 2 cut(s) 212, 235
Bst4CI ACNGT 2 cut(s) 280, 719
Bst6I CTCTTC 1 cut(s) 775
BstDEI CTNAG 3 cut(s) 106, 381, 618
BstDSI CCRYGG 2 cut(s) 93, 926
BstF5I GGATG 1 cut(s) 559
BstMAI GTCTC 2 cut(s) 146, 302
BstMWI GCNNNNNNNGC 5 cut(s) 273, 282, 425, 700, 796
BstNI CCWGG 2 cut(s) 212, 235
BstNSI RCATGY 1 cut(s) 607
BstSCI CCNGG 2 cut(s) 210, 233
BstSFI CTRYAG 1 cut(s) 518
BstV1I GCAGC 5 cut(s) 504, 532, 802, 805, 808
BstV2I GAAGAC 1 cut(s) 41
BstX2I RGATCY 2 cut(s) 87, 525
BstYI RGATCY 2 cut(s) 87, 525
BsuRI GGCC 3 cut(s) 98, 325, 831
BtgI CCRYGG 2 cut(s) 93, 926
BtgZI GCGATG 1 cut(s) 552
BtsCI GGATG 1 cut(s) 559
CciI TCATGA 2 cut(s) 784, 901
Cfr13I GGNCC 2 cut(s) 237, 736
Csp6I GTAC 2 cut(s) 329, 432
CviAII CATG 7 cut(s) 94, 300, 604, 785, 836, 902, 927
CviQI GTAC 2 cut(s) 329, 432
DdeI CTNAG 3 cut(s) 106, 381, 618
EaeI YGGCCR 1 cut(s) 829
Eam1104I CTCTTC 1 cut(s) 775
EarI CTCTTC 1 cut(s) 775
Ecl136II GAGCTC 1 cut(s) 920
Eco130I CCWWGG 3 cut(s) 93, 167, 926
Eco147I AGGCCT 1 cut(s) 325
Eco24I GRGCYC 1 cut(s) 922
Eco47I GGWCC 2 cut(s) 237, 736
Eco53kI GAGCTC 1 cut(s) 920
Eco57I CTGAAG 1 cut(s) 72
EcoICRI GAGCTC 1 cut(s) 920
EcoRII CCWGG 2 cut(s) 210, 233
EcoT14I CCWWGG 3 cut(s) 93, 167, 926
EcoT38I GRGCYC 1 cut(s) 922
ErhI CCWWGG 3 cut(s) 93, 167, 926
Esp3I CGTCTC 1 cut(s) 302
FaeI CATG 7 cut(s) 97, 303, 607, 788, 839, 905, 930
FatI CATG 7 cut(s) 93, 299, 603, 784, 835, 901, 926
FauI CCCGC 1 cut(s) 924
FbaI TGATCA 2 cut(s) 469, 637
Fnu4HI GCNGC 7 cut(s) 318, 518, 521, 695, 791, 794, 797
FokI GGATG 1 cut(s) 566
FriOI GRGCYC 1 cut(s) 922
Fsp4HI GCNGC 7 cut(s) 318, 518, 521, 695, 791, 794, 797
FspBI CTAG 3 cut(s) 321, 429, 651
GluI GCNGC 7 cut(s) 318, 518, 521, 695, 791, 794, 797
GsaI CCCAGC 1 cut(s) 917
HaeIII GGCC 3 cut(s) 98, 325, 831
HapII CCGG 1 cut(s) 491
Hin1II CATG 7 cut(s) 97, 303, 607, 788, 839, 905, 930
HinfI GANTC 6 cut(s) 4, 118, 400, 545, 559, 891
HpaII CCGG 1 cut(s) 491
HphI GGTGA 3 cut(s) 43, 161, 818
Hpy188I TCNGA 8 cut(s) 117, 123, 289, 399, 621, 679, 819, 877
Hpy188III TCNNGA 5 cut(s) 8, 461, 491, 785, 902
HpyAV CCTTC 2 cut(s) 238, 404
HpyCH4III ACNGT 2 cut(s) 280, 719
HpyCH4V TGCA 1 cut(s) 520
HpyF10VI GCNNNNNNNGC 5 cut(s) 273, 282, 425, 700, 796
HpyF3I CTNAG 3 cut(s) 106, 381, 618
Hsp92II CATG 7 cut(s) 97, 303, 607, 788, 839, 905, 930
Kpn2I TCCGGA 1 cut(s) 490
Ksp22I TGATCA 2 cut(s) 469, 637
LmnI GCTCC 1 cut(s) 917
Lsp1109I GCAGC 5 cut(s) 504, 532, 802, 805, 808
LweI GCATC 1 cut(s) 604
MaeI CTAG 3 cut(s) 321, 429, 651
MboII GAAGA 7 cut(s) 46, 220, 369, 397, 476, 762, 917
MfeI CAATTG 1 cut(s) 704
MflI RGATCY 2 cut(s) 87, 525
MhlI GDGCHC 1 cut(s) 922
MlsI TGGCCA 1 cut(s) 831
MluCI AATT 6 cut(s) 135, 194, 447, 499, 704, 881
MluNI TGGCCA 1 cut(s) 831
MlyI GAGTC 1 cut(s) 885
MnlI CCTC 9 cut(s) 109, 174, 344, 347, 360, 539, 727, 778, 784
Mox20I TGGCCA 1 cut(s) 831
MroI TCCGGA 1 cut(s) 490
MscI TGGCCA 1 cut(s) 831
MseI TTAA 1 cut(s) 885
MslI CAYNNNNRTG 2 cut(s) 465, 783
Msp20I TGGCCA 1 cut(s) 831
MspA1I CMGCKG 1 cut(s) 913
MspI CCGG 1 cut(s) 491
MspR9I CCNGG 2 cut(s) 212, 235
MunI CAATTG 1 cut(s) 704
MvaI CCWGG 2 cut(s) 212, 235
MwoI GCNNNNNNNGC 5 cut(s) 273, 282, 425, 700, 796
NcoI CCATGG 2 cut(s) 93, 926
NlaIII CATG 7 cut(s) 97, 303, 607, 788, 839, 905, 930
NlaIV GGNNCC 2 cut(s) 489, 711
NmeAIII GCCGAG 1 cut(s) 82
NspI RCATGY 1 cut(s) 607
PagI TCATGA 2 cut(s) 784, 901
PceI AGGCCT 1 cut(s) 325
PciI ACATGT 1 cut(s) 603
PcsI WCGNNNNNNNCGW 1 cut(s) 510
PfeI GAWTC 4 cut(s) 118, 400, 545, 559
PfoI TCCNGGA 1 cut(s) 233
PkrI GCNGC 7 cut(s) 319, 519, 522, 696, 792, 795, 798
PleI GAGTC 1 cut(s) 885
PpsI GAGTC 1 cut(s) 885
PscI ACATGT 1 cut(s) 603
PsiI TTATAA 1 cut(s) 843
Psp124BI GAGCTC 1 cut(s) 922
Psp6I CCWGG 2 cut(s) 210, 233
PspFI CCCAGC 1 cut(s) 913
PspGI CCWGG 2 cut(s) 210, 233
PspN4I GGNNCC 2 cut(s) 489, 711
PspPI GGNCC 2 cut(s) 237, 736
PstI CTGCAG 1 cut(s) 522
PsuI RGATCY 2 cut(s) 87, 525
PvuII CAGCTG 1 cut(s) 913
RsaI GTAC 2 cut(s) 330, 433
RsaNI GTAC 2 cut(s) 329, 432
RseI CAYNNNNRTG 2 cut(s) 465, 783
SacI GAGCTC 1 cut(s) 922
SaqAI TTAA 1 cut(s) 885
SatI GCNGC 7 cut(s) 318, 518, 521, 695, 791, 794, 797
Sau96I GGNCC 2 cut(s) 237, 736
ScaI AGTACT 1 cut(s) 433
SchI GAGTC 1 cut(s) 885
ScrFI CCNGG 2 cut(s) 212, 235
SduI GDGCHC 1 cut(s) 922
SfaNI GCATC 1 cut(s) 604
SfcI CTRYAG 1 cut(s) 518
SinI GGWCC 2 cut(s) 237, 736
SmiMI CAYNNNNRTG 2 cut(s) 465, 783
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
Sse9I AATT 6 cut(s) 135, 194, 447, 499, 704, 881
SseBI AGGCCT 1 cut(s) 325
SsiI CCGC 4 cut(s) 318, 414, 695, 931
SspI AATATT 2 cut(s) 674, 847
SspMI CTAG 3 cut(s) 321, 429, 651
SstI GAGCTC 1 cut(s) 922
StuI AGGCCT 1 cut(s) 325
StyD4I CCNGG 2 cut(s) 210, 233
StyI CCWWGG 3 cut(s) 93, 167, 926
TaaI ACNGT 2 cut(s) 280, 719
TaqI TCGA 1 cut(s) 855
TasI AATT 6 cut(s) 135, 194, 447, 499, 704, 881
TatI WGTACW 2 cut(s) 328, 431
TauI GCSGC 2 cut(s) 320, 697
TfiI GAWTC 4 cut(s) 118, 400, 545, 559
Tru1I TTAA 1 cut(s) 885
Tru9I TTAA 1 cut(s) 885
TseI GCWGC 5 cut(s) 517, 520, 790, 793, 796
TspDTI ATGAA 2 cut(s) 894, 918
TspGWI ACGGA 1 cut(s) 326
VpaK11BI GGWCC 2 cut(s) 237, 736
XapI RAATTY 2 cut(s) 135, 881
XceI RCATGY 1 cut(s) 607
XspI CTAG 3 cut(s) 321, 429, 651
ZrmI AGTACT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.