Rmu_sc0000477.1_g000006
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000477.1
OG0000636
Physical Location & Seq
Reverse (-)
27720 .. 31009
3290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000477.1_g000006.1.cds

Sequence Viewer

Length: 585 bp
atggactgggaattagtattagctcgttttgttgaaatctgtaatggagaattgacgttccaaagaggtggcggaaggcgtcgtagtctcgcagacgaaggaggcgtactggttgctgctactgctgggacccgcttctcctccgctcggcccggcctgctggcccgacccgatcaattcatgactctggatcaacttgatgtgggtgtggtgaagacgtttcaccctactgaagctgagttggtgggtttctttctatacaacaagatttccatggcctcaaacccaggcaatcatattcagaccttccctgaaatttgtatatacggcgagacaggcttaccaccttgggagatatggagggtatatcagcaattcaagtttccccaccaagattttctctacttctactcctgggccaagaaagtgagccccaacaaatctcgcaactctcgcacggttggctctgatggaggaacgtggagcgagacggaagccggtaggcctgtgtatatcagtggaagtgaagaggcgtttgggaaagtcaggaagtttcggtcaccgatgtttgaaggacgtggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

194

Amino Acids

21.84

Weight (kDa)

8.56

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 146
AciI CCGC 3 cut(s) 72, 133, 144
AclWI GGATC 1 cut(s) 198
AcsI RAATTY 1 cut(s) 315
AcuI CTGAAG 1 cut(s) 252
AcyI GRCGYC 1 cut(s) 79
AfaI GTAC 1 cut(s) 108
AfiI CCNNNNNNNGG 1 cut(s) 147
AgsI TTSAA 3 cut(s) 35, 379, 572
AjiI CACGTC 1 cut(s) 578
AjnI CCWGG 2 cut(s) 286, 413
AjuI GAANNNNNNNTTGG 2 cut(s) 519, 551
AluBI AGCT 2 cut(s) 23, 236
AluI AGCT 2 cut(s) 23, 236
Alw26I GTCTC 3 cut(s) 92, 326, 482
AlwI GGATC 1 cut(s) 198
AoxI GGCC 6 cut(s) 149, 154, 162, 276, 417, 503
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 315
AspS9I GGNCC 4 cut(s) 129, 150, 163, 417
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 3 cut(s) 215, 223, 552
AvaII GGWCC 1 cut(s) 129
BanII GRGCYC 1 cut(s) 434
BarI GAAGNNNNNNTAC 2 cut(s) 90, 122
BbsI GAAGAC 1 cut(s) 221
BbvI GCAGC 1 cut(s) 103
BccI CCATC 1 cut(s) 464
BceAI ACGGC 1 cut(s) 343
BciT130I CCWGG 2 cut(s) 288, 415
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 3 cut(s) 92, 326, 482
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 3 cut(s) 153, 288, 415
Bme18I GGWCC 1 cut(s) 129
BmgBI CACGTC 1 cut(s) 578
BmgT120I GGNCC 4 cut(s) 129, 150, 163, 417
BmiI GGNNCC 2 cut(s) 130, 131
BmrFI CCNGG 3 cut(s) 153, 288, 415
BmrI ACTGGG 1 cut(s) 16
BmuI ACTGGG 1 cut(s) 16
BpiI GAAGAC 1 cut(s) 221
BpuMI CCSGG 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 79
BsaJI CCNNGG 4 cut(s) 273, 286, 347, 414
BsaXI ACNNNNNCTCC 2 cut(s) 395, 425
Bsc4I CCNNNNNNNGG 1 cut(s) 147
Bse118I RCCGGY 1 cut(s) 497
Bse1I ACTGG 2 cut(s) 11, 114
BseBI CCWGG 2 cut(s) 288, 415
BseDI CCNNGG 4 cut(s) 273, 286, 347, 414
BseLI CCNNNNNNNGG 1 cut(s) 147
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 2 cut(s) 11, 114
BseRI GAGGAG 1 cut(s) 130
BseXI GCAGC 1 cut(s) 103
BseYI CCCAGC 1 cut(s) 125
BshFI GGCC 6 cut(s) 151, 156, 164, 278, 419, 505
BsiSI CCGG 2 cut(s) 153, 498
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 147
BsmAI GTCTC 3 cut(s) 92, 326, 482
BsmBI CGTCTC 1 cut(s) 482
BsmFI GGGAC 1 cut(s) 142
BsnI GGCC 6 cut(s) 151, 156, 164, 278, 419, 505
Bsp1286I GDGCHC 1 cut(s) 434
Bsp143I GATC 2 cut(s) 172, 190
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 3 cut(s) 72, 133, 144
BspANI GGCC 6 cut(s) 151, 156, 164, 278, 419, 505
BspCNI CTCAG 1 cut(s) 229
BspHI TCATGA 1 cut(s) 180
BspLI GGNNCC 2 cut(s) 130, 131
BspPI GGATC 1 cut(s) 198
BsrBI CCGCTC 1 cut(s) 146
BsrFI RCCGGY 1 cut(s) 497
BsrI ACTGG 2 cut(s) 11, 114
BssAI RCCGGY 1 cut(s) 497
BssECI CCNNGG 4 cut(s) 273, 286, 347, 414
BssMI GATC 2 cut(s) 172, 190
BssNI GRCGYC 1 cut(s) 79
BssT1I CCWWGG 2 cut(s) 273, 347
Bst2UI CCWGG 2 cut(s) 288, 415
Bst4CI ACNGT 1 cut(s) 460
Bst6I CTCTTC 1 cut(s) 522
BstACI GRCGYC 1 cut(s) 79
BstC8I GCNNGC 2 cut(s) 158, 162
BstDEI CTNAG 1 cut(s) 237
BstDSI CCRYGG 1 cut(s) 273
BstEII GGTNACC 1 cut(s) 558
BstKTI GATC 2 cut(s) 175, 193
BstMAI GTCTC 3 cut(s) 92, 326, 482
BstMBI GATC 2 cut(s) 172, 190
BstMWI GCNNNNNNNGC 5 cut(s) 122, 157, 336, 453, 462
BstNI CCWGG 2 cut(s) 288, 415
BstPI GGTNACC 1 cut(s) 558
BstSCI CCNGG 3 cut(s) 151, 286, 413
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 221
BstXI CCANNNNNNTGG 1 cut(s) 68
BsuRI GGCC 6 cut(s) 151, 156, 164, 278, 419, 505
BtgI CCRYGG 1 cut(s) 273
BtrI CACGTC 1 cut(s) 578
BtsIMutI CAGTG 1 cut(s) 523
Cac8I GCNNGC 2 cut(s) 158, 162
CciI TCATGA 1 cut(s) 180
Cfr10I RCCGGY 1 cut(s) 497
Cfr13I GGNCC 4 cut(s) 129, 150, 163, 417
CseI GACGC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 107
CviAII CATG 2 cut(s) 181, 274
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 1 cut(s) 237
DpnI GATC 2 cut(s) 174, 192
DpnII GATC 2 cut(s) 172, 190
Eam1104I CTCTTC 1 cut(s) 522
EarI CTCTTC 1 cut(s) 522
EciI GGCGGA 1 cut(s) 87
Eco130I CCWWGG 2 cut(s) 273, 347
Eco147I AGGCCT 1 cut(s) 505
Eco24I GRGCYC 1 cut(s) 434
Eco47I GGWCC 1 cut(s) 129
Eco57I CTGAAG 1 cut(s) 252
Eco91I GGTNACC 1 cut(s) 558
EcoO109I RGGNCCY 1 cut(s) 129
EcoO65I GGTNACC 1 cut(s) 558
EcoRII CCWGG 2 cut(s) 286, 413
EcoT14I CCWWGG 2 cut(s) 273, 347
EcoT38I GRGCYC 1 cut(s) 434
ErhI CCWWGG 2 cut(s) 273, 347
Esp3I CGTCTC 1 cut(s) 482
FaeI CATG 2 cut(s) 184, 277
FaiI YATR 9 cut(s) 182, 259, 275, 297, 323, 325, 358, 367, 513
FaqI GGGAC 1 cut(s) 142
FatI CATG 2 cut(s) 180, 273
FauI CCCGC 1 cut(s) 140
Fnu4HI GCNGC 1 cut(s) 117
FriOI GRGCYC 1 cut(s) 434
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
GsaI CCCAGC 1 cut(s) 129
HaeIII GGCC 6 cut(s) 151, 156, 164, 278, 419, 505
HapII CCGG 2 cut(s) 153, 498
HgaI GACGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 79
Hin1II CATG 2 cut(s) 184, 277
HinfI GANTC 1 cut(s) 184
HpaII CCGG 2 cut(s) 153, 498
HphI GGTGA 3 cut(s) 215, 223, 552
Hpy188I TCNGA 2 cut(s) 303, 469
Hpy188III TCNNGA 3 cut(s) 181, 188, 547
Hpy99I CGWCG 1 cut(s) 84
HpyAV CCTTC 4 cut(s) 69, 92, 316, 566
HpyCH4III ACNGT 1 cut(s) 460
HpyCH4IV ACGT 4 cut(s) 56, 218, 479, 577
HpyF10VI GCNNNNNNNGC 5 cut(s) 122, 157, 336, 453, 462
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 4 cut(s) 56, 218, 479, 577
Hsp92I GRCGYC 1 cut(s) 79
Hsp92II CATG 2 cut(s) 184, 277
KflI GGGWCCC 1 cut(s) 129
Kzo9I GATC 2 cut(s) 172, 190
LmnI GCTCC 1 cut(s) 483
Lsp1109I GCAGC 1 cut(s) 103
MaeII ACGT 4 cut(s) 56, 218, 479, 577
MaeIII GTNAC 1 cut(s) 558
MalI GATC 2 cut(s) 174, 192
MbiI CCGCTC 1 cut(s) 146
MboI GATC 2 cut(s) 172, 190
MboII GAAGA 2 cut(s) 226, 539
MhlI GDGCHC 1 cut(s) 434
MluCI AATT 5 cut(s) 11, 50, 176, 315, 374
MlyI GAGTC 1 cut(s) 178
MnlI CCTC 7 cut(s) 59, 95, 151, 289, 354, 467, 523
MspI CCGG 2 cut(s) 153, 498
MspR9I CCNGG 3 cut(s) 153, 288, 415
MvaI CCWGG 2 cut(s) 288, 415
MwoI GCNNNNNNNGC 5 cut(s) 122, 157, 336, 453, 462
NciI CCSGG 1 cut(s) 153
NcoI CCATGG 1 cut(s) 273
NdeII GATC 2 cut(s) 172, 190
NlaIII CATG 2 cut(s) 184, 277
NlaIV GGNNCC 2 cut(s) 130, 131
NmeAIII GCCGAG 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 558
PagI TCATGA 1 cut(s) 180
PceI AGGCCT 1 cut(s) 505
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
PpuMI RGGWCCY 1 cut(s) 129
Psp5II RGGWCCY 1 cut(s) 129
Psp6I CCWGG 2 cut(s) 286, 413
PspEI GGTNACC 1 cut(s) 558
PspFI CCCAGC 1 cut(s) 125
PspGI CCWGG 2 cut(s) 286, 413
PspN4I GGNNCC 2 cut(s) 130, 131
PspPI GGNCC 4 cut(s) 129, 150, 163, 417
PspPPI RGGWCCY 1 cut(s) 129
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 2 cut(s) 172, 190
Sau96I GGNCC 4 cut(s) 129, 150, 163, 417
SchI GAGTC 1 cut(s) 178
ScrFI CCNGG 3 cut(s) 153, 288, 415
SduI GDGCHC 1 cut(s) 434
SetI ASST 9 cut(s) 25, 59, 70, 221, 238, 308, 349, 482, 580
SinI GGWCC 1 cut(s) 129
Sse9I AATT 5 cut(s) 11, 50, 176, 315, 374
SseBI AGGCCT 1 cut(s) 505
SsiI CCGC 3 cut(s) 72, 133, 144
StuI AGGCCT 1 cut(s) 505
StyD4I CCNGG 3 cut(s) 151, 286, 413
StyI CCWWGG 2 cut(s) 273, 347
TaaI ACNGT 1 cut(s) 460
TaiI ACGT 4 cut(s) 59, 221, 482, 580
TaqII GACCGA 1 cut(s) 546
TasI AATT 5 cut(s) 11, 50, 176, 315, 374
TscAI CASTG 1 cut(s) 523
TseFI GTSAC 1 cut(s) 558
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 558
TspDTI ATGAA 1 cut(s) 169
TspGWI ACGGA 1 cut(s) 506
TspRI CASTG 1 cut(s) 523
VpaK11BI GGWCC 1 cut(s) 129
XapI RAATTY 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.