Rmu_sc0004567.1_g000017
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004567.1
OG0000636
Physical Location & Seq
Reverse (-)
79160 .. 80131
972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004567.1_g000017.1.cds

Sequence Viewer

Length: 768 bp
atgagcctggaagaccttgatgtgggggctgtgaaaacattccaccccactgattctgatttagtgggaagctatctctacaacataatcaaatccccaaccccaattggaaaacaaacattccctgagattgaaatatatggcaccacaactttaccaccaattggctgcgatgggggcacatggagcgagactgaagctgctaaacctgtctatgtcagtggaattgaagagccttatggaaaactaaggaaatttagatacgaaaacaacaaagacaaaggttgtgaacaccatgctgcttggttgatggatgagttcaccatcaaccaagcacccgatttggctttgtgccgactcaaagtcaatgacaaaggaggaggaagaaaaaagaggaagaagagttctgatgagactaatgaggatgagaatcacagaaagacaatgactttcaaaaaccgaaaacttgaaccgaaaagagttcaagttcaaaacaacatgttgttctctccaactggcttggttgatgattatcatgacattttgaatagtgatcagtttatggcttctcttgatcaatggtatgaggaacaacaacaacagttttcggattctttactactagtgccgcaacaacaagtagaacctaacaacagttgtgaggaacaacaacagcaacaagatgagcaaaaattgcggccttctccctctcttgttcacgagcagcagctctgtggtggttttgatctgatggtttatggttattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

255

Amino Acids

29.17

Weight (kDa)

5.0

Isoelectric Point (pI)

54.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 143
AccB7I CCANNNNNTGG 1 cut(s) 164
AciI CCGC 2 cut(s) 629, 697
AcsI RAATTY 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 216
AfiI CCNNNNNNNGG 2 cut(s) 22, 164
AflIII ACRYGT 1 cut(s) 498
AgsI TTSAA 7 cut(s) 134, 230, 454, 470, 485, 491, 547
AhdI GACNNNNNGTC 1 cut(s) 362
AhlI ACTAGT 1 cut(s) 622
AjnI CCWGG 1 cut(s) 6
AloI GAACNNNNNNTCC 2 cut(s) 388, 420
AluBI AGCT 3 cut(s) 72, 200, 730
AluI AGCT 3 cut(s) 72, 200, 730
Alw26I GTCTC 2 cut(s) 185, 407
AoxI GGCC 1 cut(s) 698
ApeKI GCWGC 5 cut(s) 168, 200, 299, 724, 727
ApoI RAATTY 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 313
BaeGI GKGCMC 1 cut(s) 182
BanI GGYRCC 1 cut(s) 143
BauI CACGAG 1 cut(s) 719
BbsI GAAGAC 1 cut(s) 18
BbvI GCAGC 5 cut(s) 155, 187, 286, 736, 739
BccI CCATC 4 cut(s) 167, 304, 332, 745
BciT130I CCWGG 1 cut(s) 8
BclI TGATCA 2 cut(s) 553, 574
BcoDI GTCTC 2 cut(s) 185, 407
BcuI ACTAGT 1 cut(s) 622
BfaI CTAG 1 cut(s) 623
BisI GCNGC 7 cut(s) 169, 201, 300, 629, 698, 725, 728
BlsI GCNGC 7 cut(s) 170, 202, 301, 630, 699, 726, 729
Bme1390I CCNGG 1 cut(s) 8
BmeRI GACNNNNNGTC 1 cut(s) 362
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 8
BpiI GAAGAC 1 cut(s) 18
BsaBI GATNNNNATC 2 cut(s) 429, 531
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 164
Bse1I ACTGG 1 cut(s) 520
Bse8I GATNNNNATC 2 cut(s) 429, 531
BseBI CCWGG 1 cut(s) 8
BseGI GGATG 2 cut(s) 319, 430
BseJI GATNNNNATC 2 cut(s) 429, 531
BseLI CCNNNNNNNGG 2 cut(s) 22, 164
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 1 cut(s) 393
BseSI GKGCMC 1 cut(s) 182
BseXI GCAGC 5 cut(s) 155, 187, 286, 736, 739
BshFI GGCC 1 cut(s) 700
BshNI GGYRCC 1 cut(s) 143
BslI CCNNNNNNNGG 2 cut(s) 22, 164
BsmAI GTCTC 2 cut(s) 185, 407
BsnI GGCC 1 cut(s) 700
Bsp1286I GDGCHC 1 cut(s) 182
Bsp143I GATC 3 cut(s) 553, 574, 745
BspACI CCGC 2 cut(s) 629, 697
BspANI GGCC 1 cut(s) 700
BspCNI CTCAG 1 cut(s) 118
BspHI TCATGA 1 cut(s) 535
BspLI GGNNCC 1 cut(s) 145
BspQI GCTCTTC 1 cut(s) 225
BspT107I GGYRCC 1 cut(s) 143
BsrI ACTGG 1 cut(s) 520
BssMI GATC 3 cut(s) 553, 574, 745
BssSI CACGAG 1 cut(s) 719
Bst2BI CACGAG 1 cut(s) 719
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 2 cut(s) 603, 656
Bst6I CTCTTC 2 cut(s) 225, 395
BstAPI GCANNNNNTGC 1 cut(s) 694
BstDEI CTNAG 2 cut(s) 126, 248
BstF5I GGATG 2 cut(s) 319, 430
BstKTI GATC 3 cut(s) 556, 577, 748
BstMAI GTCTC 2 cut(s) 185, 407
BstMBI GATC 3 cut(s) 553, 574, 745
BstMWI GCNNNNNNNGC 3 cut(s) 177, 186, 694
BstNI CCWGG 1 cut(s) 8
BstNSI RCATGY 1 cut(s) 502
BstSCI CCNGG 1 cut(s) 6
BstSLI GKGCMC 1 cut(s) 182
BstV1I GCAGC 5 cut(s) 155, 187, 286, 736, 739
BstV2I GAAGAC 1 cut(s) 18
BsuRI GGCC 1 cut(s) 700
BtgZI GCGATG 1 cut(s) 186
BtsCI GGATG 2 cut(s) 319, 430
BtsIMutI CAGTG 2 cut(s) 48, 226
CciI TCATGA 1 cut(s) 535
CviAII CATG 4 cut(s) 183, 296, 499, 536
DdeI CTNAG 2 cut(s) 126, 248
DpnI GATC 3 cut(s) 555, 576, 747
DpnII GATC 3 cut(s) 553, 574, 745
DriI GACNNNNNGTC 1 cut(s) 362
Eam1104I CTCTTC 2 cut(s) 225, 395
Eam1105I GACNNNNNGTC 1 cut(s) 362
EarI CTCTTC 2 cut(s) 225, 395
Eco57I CTGAAG 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 6
FaeI CATG 4 cut(s) 186, 299, 502, 539
FatI CATG 4 cut(s) 182, 295, 498, 535
FbaI TGATCA 2 cut(s) 553, 574
Fnu4HI GCNGC 7 cut(s) 169, 201, 300, 629, 698, 725, 728
FokI GGATG 2 cut(s) 326, 437
Fsp4HI GCNGC 7 cut(s) 169, 201, 300, 629, 698, 725, 728
FspBI CTAG 1 cut(s) 623
GluI GCNGC 7 cut(s) 169, 201, 300, 629, 698, 725, 728
HaeIII GGCC 1 cut(s) 700
Hin1II CATG 4 cut(s) 186, 299, 502, 539
HinfI GANTC 4 cut(s) 53, 357, 430, 611
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 3 cut(s) 290, 321, 718
Hpy188I TCNGA 4 cut(s) 58, 409, 610, 750
Hpy188III TCNNGA 3 cut(s) 536, 572, 719
Hpy8I GTNNAC 3 cut(s) 290, 321, 718
HpyAV CCTTC 1 cut(s) 711
HpyCH4III ACNGT 2 cut(s) 603, 656
HpyF10VI GCNNNNNNNGC 3 cut(s) 177, 186, 694
HpyF3I CTNAG 2 cut(s) 126, 248
Hsp92II CATG 4 cut(s) 186, 299, 502, 539
Ksp22I TGATCA 2 cut(s) 553, 574
Kzo9I GATC 3 cut(s) 553, 574, 745
LguI GCTCTTC 1 cut(s) 225
LmnI GCTCC 1 cut(s) 186
LpnPI CCDG 4 cut(s) 20, 138, 222, 501
Lsp1109I GCAGC 5 cut(s) 155, 187, 286, 736, 739
MaeI CTAG 1 cut(s) 623
MalI GATC 3 cut(s) 555, 576, 747
MboI GATC 3 cut(s) 553, 574, 745
MboII GAAGA 5 cut(s) 23, 242, 396, 409, 412
MfeI CAATTG 2 cut(s) 105, 162
MhlI GDGCHC 1 cut(s) 182
MluCI AATT 5 cut(s) 105, 162, 225, 254, 692
MlyI GAGTC 1 cut(s) 351
MmeI TCCRAC 1 cut(s) 536
MnlI CCTC 7 cut(s) 371, 374, 387, 415, 580, 655, 718
MroXI GAANNNNTTC 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 8
MunI CAATTG 2 cut(s) 105, 162
MvaI CCWGG 1 cut(s) 8
MwoI GCNNNNNNNGC 3 cut(s) 177, 186, 694
NdeII GATC 3 cut(s) 553, 574, 745
NlaIII CATG 4 cut(s) 186, 299, 502, 539
NlaIV GGNNCC 1 cut(s) 145
NspI RCATGY 1 cut(s) 502
PagI TCATGA 1 cut(s) 535
PciI ACATGT 1 cut(s) 498
PciSI GCTCTTC 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 3 cut(s) 53, 430, 611
PflMI CCANNNNNTGG 1 cut(s) 164
PkrI GCNGC 7 cut(s) 170, 202, 301, 630, 699, 726, 729
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
PscI ACATGT 1 cut(s) 498
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 145
SapI GCTCTTC 1 cut(s) 225
SatI GCNGC 7 cut(s) 169, 201, 300, 629, 698, 725, 728
Sau3AI GATC 3 cut(s) 553, 574, 745
SchI GAGTC 1 cut(s) 351
ScrFI CCNGG 1 cut(s) 8
SduI GDGCHC 1 cut(s) 182
SetI ASST 7 cut(s) 18, 74, 202, 211, 286, 649, 732
SpeI ACTAGT 1 cut(s) 622
Sse9I AATT 5 cut(s) 105, 162, 225, 254, 692
SsiI CCGC 2 cut(s) 629, 697
SspMI CTAG 1 cut(s) 623
StyD4I CCNGG 1 cut(s) 6
TaaI ACNGT 2 cut(s) 603, 656
TasI AATT 5 cut(s) 105, 162, 225, 254, 692
TauI GCSGC 2 cut(s) 631, 700
TfiI GAWTC 3 cut(s) 53, 430, 611
TscAI CASTG 2 cut(s) 55, 226
TseI GCWGC 5 cut(s) 168, 200, 299, 724, 727
TspRI CASTG 2 cut(s) 55, 226
Van91I CCANNNNNTGG 1 cut(s) 164
XapI RAATTY 1 cut(s) 254
XceI RCATGY 1 cut(s) 502
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 1 cut(s) 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.