Rmu_sc0034369.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034369.1
OG0000636
Physical Location & Seq
Reverse (-)
730 .. 1215
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034369.1_g000001.1.cds

Sequence Viewer

Length: 486 bp
atgctcctatcagatgagttcaccatcaaccaagcaccagatctggctttgtgccgactcaaagtcaatgataaaggaggaggaagaaaaaagaggaagaagagttctgatgagactaatgaggatcagaatgtgagaagtaaaaagtgtttgaaaagaggcagtgcttcctttgctactactacttcacagctaattctctctccctatcatcatgaagatgatcaagcggttcaggtggttccggagaacaattacgattatgacgagctgcagcagatcctctttagtgatgatgattgtatggatgagaatctaatgttctctcccactatcttgtttgaggatgctcagcttatggcttctgttgatcaatcaatagctagtgagcaacaacaacaacaagattcggattatacacttgcgccgcaacagcaattggaacctgacaataggtgtcaagaggaggaccaaatacaacaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.4

Weight (kDa)

4.3

Isoelectric Point (pI)

63.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 2 cut(s) 230, 428
AclWI GGATC 2 cut(s) 132, 274
AgsI TTSAA 1 cut(s) 154
AhdI GACNNNNNGTC 1 cut(s) 62
AloI GAACNNNNNNTCC 2 cut(s) 88, 120
AluBI AGCT 4 cut(s) 193, 271, 355, 383
AluI AGCT 4 cut(s) 193, 271, 355, 383
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 2 cut(s) 132, 274
Aor13HI TCCGGA 1 cut(s) 244
ApeKI GCWGC 2 cut(s) 271, 274
AspLEI GCGC 1 cut(s) 427
AspS9I GGNCC 1 cut(s) 469
AsuHPI GGTGA 1 cut(s) 13
AvaII GGWCC 1 cut(s) 469
BbvI GCAGC 2 cut(s) 258, 286
BccI CCATC 1 cut(s) 32
BclI TGATCA 2 cut(s) 223, 370
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 1 cut(s) 272
BglII AGATCT 1 cut(s) 40
BisI GCNGC 3 cut(s) 272, 275, 428
BlpI GCTNAGC 1 cut(s) 351
BlsI GCNGC 3 cut(s) 273, 276, 429
Bme18I GGWCC 1 cut(s) 469
BmeRI GACNNNNNGTC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 469
BmiI GGNNCC 2 cut(s) 243, 444
BmsI GCATC 1 cut(s) 337
Bpu1102I GCTNAGC 1 cut(s) 351
BsaBI GATNNNNATC 1 cut(s) 312
BsaWI WCCGGW 1 cut(s) 244
Bse8I GATNNNNATC 1 cut(s) 312
BseAI TCCGGA 1 cut(s) 244
BseGI GGATG 2 cut(s) 313, 352
BseJI GATNNNNATC 1 cut(s) 312
BseMII CTCAG 1 cut(s) 365
BseRI GAGGAG 2 cut(s) 93, 479
BseXI GCAGC 2 cut(s) 258, 286
BsiSI CCGG 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 107
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 5 cut(s) 40, 124, 223, 279, 370
Bsp1720I GCTNAGC 1 cut(s) 351
BspACI CCGC 2 cut(s) 230, 428
BspCNI CTCAG 1 cut(s) 364
BspEI TCCGGA 1 cut(s) 244
BspHI TCATGA 1 cut(s) 214
BspLI GGNNCC 2 cut(s) 243, 444
BspMAI CTGCAG 1 cut(s) 276
BspPI GGATC 2 cut(s) 132, 274
BssMI GATC 5 cut(s) 40, 124, 223, 279, 370
Bst6I CTCTTC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 351
BstF5I GGATG 2 cut(s) 313, 352
BstHHI GCGC 1 cut(s) 427
BstKTI GATC 5 cut(s) 43, 127, 226, 282, 373
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 5 cut(s) 40, 124, 223, 279, 370
BstMWI GCNNNNNNNGC 2 cut(s) 173, 433
BstSFI CTRYAG 1 cut(s) 272
BstV1I GCAGC 2 cut(s) 258, 286
BstX2I RGATCY 2 cut(s) 40, 279
BstYI RGATCY 2 cut(s) 40, 279
BtsCI GGATG 2 cut(s) 313, 352
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 169
CciI TCATGA 1 cut(s) 214
CfoI GCGC 1 cut(s) 427
Cfr13I GGNCC 1 cut(s) 469
CviAII CATG 1 cut(s) 215
CviJI RGCY 6 cut(s) 47, 193, 271, 355, 362, 383
CviKI_1 RGCY 6 cut(s) 47, 193, 271, 355, 362, 383
DdeI CTNAG 1 cut(s) 351
DpnI GATC 5 cut(s) 42, 126, 225, 281, 372
DpnII GATC 5 cut(s) 40, 124, 223, 279, 370
DriI GACNNNNNGTC 1 cut(s) 62
Eam1104I CTCTTC 1 cut(s) 95
Eam1105I GACNNNNNGTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 469
FaeI CATG 1 cut(s) 218
FaiI YATR 5 cut(s) 216, 264, 305, 359, 417
FatI CATG 1 cut(s) 214
FbaI TGATCA 2 cut(s) 223, 370
Fnu4HI GCNGC 3 cut(s) 272, 275, 428
FokI GGATG 2 cut(s) 320, 359
Fsp4HI GCNGC 3 cut(s) 272, 275, 428
FspBI CTAG 1 cut(s) 384
GlaI GCGC 1 cut(s) 426
GluI GCNGC 3 cut(s) 272, 275, 428
HapII CCGG 1 cut(s) 245
HhaI GCGC 1 cut(s) 427
Hin1II CATG 1 cut(s) 218
Hin6I GCGC 1 cut(s) 425
HinP1I GCGC 1 cut(s) 425
HinfI GANTC 3 cut(s) 57, 313, 407
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 13
Hpy166II GTNNAC 1 cut(s) 21
Hpy188I TCNGA 4 cut(s) 13, 109, 129, 412
Hpy188III TCNNGA 3 cut(s) 215, 245, 461
Hpy8I GTNNAC 1 cut(s) 21
HpyCH4V TGCA 1 cut(s) 274
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 433
HpyF3I CTNAG 1 cut(s) 351
Hsp92II CATG 1 cut(s) 218
HspAI GCGC 1 cut(s) 425
Kpn2I TCCGGA 1 cut(s) 244
Ksp22I TGATCA 2 cut(s) 223, 370
Kzo9I GATC 5 cut(s) 40, 124, 223, 279, 370
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 5 cut(s) 29, 51, 221, 258, 459
Lsp1109I GCAGC 2 cut(s) 258, 286
LweI GCATC 1 cut(s) 337
MaeI CTAG 1 cut(s) 384
MalI GATC 5 cut(s) 42, 126, 225, 281, 372
MboI GATC 5 cut(s) 40, 124, 223, 279, 370
MboII GAAGA 4 cut(s) 96, 109, 112, 230
MfeI CAATTG 1 cut(s) 437
MflI RGATCY 2 cut(s) 40, 279
MluCI AATT 3 cut(s) 195, 253, 437
MlyI GAGTC 1 cut(s) 51
MnlI CCTC 9 cut(s) 71, 74, 87, 115, 152, 293, 337, 457, 460
MroI TCCGGA 1 cut(s) 244
MslI CAYNNNNRTG 1 cut(s) 219
MspI CCGG 1 cut(s) 245
MunI CAATTG 1 cut(s) 437
MwoI GCNNNNNNNGC 2 cut(s) 173, 433
NdeII GATC 5 cut(s) 40, 124, 223, 279, 370
NlaIII CATG 1 cut(s) 218
NlaIV GGNNCC 2 cut(s) 243, 444
PagI TCATGA 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PfeI GAWTC 2 cut(s) 313, 407
PkrI GCNGC 3 cut(s) 273, 276, 429
PleI GAGTC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 51
PspN4I GGNNCC 2 cut(s) 243, 444
PspPI GGNCC 1 cut(s) 469
PstI CTGCAG 1 cut(s) 276
PsuI RGATCY 2 cut(s) 40, 279
RseI CAYNNNNRTG 1 cut(s) 219
SatI GCNGC 3 cut(s) 272, 275, 428
Sau3AI GATC 5 cut(s) 40, 124, 223, 279, 370
Sau96I GGNCC 1 cut(s) 469
SchI GAGTC 1 cut(s) 51
SetI ASST 7 cut(s) 195, 240, 273, 357, 385, 448, 458
SfaNI GCATC 1 cut(s) 337
SfcI CTRYAG 1 cut(s) 272
SinI GGWCC 1 cut(s) 469
SmiMI CAYNNNNRTG 1 cut(s) 219
Sse9I AATT 3 cut(s) 195, 253, 437
SsiI CCGC 2 cut(s) 230, 428
SspMI CTAG 1 cut(s) 384
TasI AATT 3 cut(s) 195, 253, 437
TauI GCSGC 1 cut(s) 430
TfiI GAWTC 2 cut(s) 313, 407
TscAI CASTG 1 cut(s) 169
TseI GCWGC 2 cut(s) 271, 274
TspDTI ATGAA 1 cut(s) 231
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 469
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.