Rroxscaffold_7G00204500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000636
Physical Location & Seq
Reverse (-)
53928939 .. 53929286
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00204500.1

Sequence Viewer

Length: 252 bp
ATGGCTCTCATCTATCAAATCATGACTTTGGAGGAACTTGATAGGGGTGTTGTGAAGACATTCCACCCTACCGATGCTGAGTTGATATGGAGAATCTGTCAGCCATTTAAGTTTTCACACCAAGATTTTATCTATTTCTTCTCCCGGGCCACGAAGGTGAACCCCAACGGTTCACGCAATATTCACACAGTTGGCTGTGATGGGGCGCATGGAGCGAGACCAAAGCTGCAAAGCCACTGTCAGTGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.62

Weight (kDa)

8.58

Isoelectric Point (pI)

34.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AleI CACNNNNGTG 1 cut(s) 155
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
Alw26I GTCTC 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 144
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 226
ArsI GACNNNNNNTTYG 1 cut(s) 223
Asp700I GAANNNNTTC 1 cut(s) 59
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 147
AsuC2I CCSGG 2 cut(s) 145, 146
AsuHPI GGTGA 1 cut(s) 169
AvaI CYCGRG 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 213
BccI CCATC 1 cut(s) 194
BcnI CCSGG 2 cut(s) 145, 146
BcoDI GTCTC 1 cut(s) 211
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
Bme1390I CCNGG 2 cut(s) 145, 146
BmeT110I CYCGRG 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 147
BmrFI CCNGG 2 cut(s) 145, 146
BmsI GCATC 1 cut(s) 64
BpiI GAAGAC 1 cut(s) 62
BpuMI CCSGG 2 cut(s) 145, 146
BsaI GGTCTC 1 cut(s) 211
BsaJI CCNNGG 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
BseDI CCNNGG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 69
BseXI GCAGC 1 cut(s) 213
BshFI GGCC 1 cut(s) 149
BsiHKCI CYCGRG 1 cut(s) 144
BsiSI CCGG 1 cut(s) 145
BsmAI GTCTC 1 cut(s) 211
BsnI GGCC 1 cut(s) 149
Bso31I GGTCTC 1 cut(s) 211
BsoBI CYCGRG 1 cut(s) 144
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 1 cut(s) 70
BspHI TCATGA 1 cut(s) 21
BspTNI GGTCTC 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 144
Bst4CI ACNGT 3 cut(s) 170, 190, 239
BstDEI CTNAG 1 cut(s) 78
BstHHI GCGC 1 cut(s) 208
BstMAI GTCTC 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstSCI CCNGG 2 cut(s) 143, 144
BstV1I GCAGC 1 cut(s) 213
BstV2I GAAGAC 1 cut(s) 62
BsuRI GGCC 1 cut(s) 149
BtsIMutI CAGTG 2 cut(s) 235, 248
CciI TCATGA 1 cut(s) 21
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 147
Cfr9I CCCGGG 1 cut(s) 144
CviAII CATG 2 cut(s) 22, 209
CviJI RGCY 6 cut(s) 5, 103, 149, 195, 226, 234
CviKI_1 RGCY 6 cut(s) 5, 103, 149, 195, 226, 234
DdeI CTNAG 1 cut(s) 78
Eco31I GGTCTC 1 cut(s) 211
Eco88I CYCGRG 1 cut(s) 144
FaeI CATG 2 cut(s) 25, 212
FaiI YATR 3 cut(s) 23, 88, 210
FatI CATG 2 cut(s) 21, 208
Fnu4HI GCNGC 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 227
GlaI GCGC 1 cut(s) 207
GluI GCNGC 1 cut(s) 227
HaeIII GGCC 1 cut(s) 149
HapII CCGG 1 cut(s) 145
HhaI GCGC 1 cut(s) 208
Hin1II CATG 2 cut(s) 25, 212
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HinfI GANTC 1 cut(s) 93
HpaII CCGG 1 cut(s) 145
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 2 cut(s) 160, 173
Hpy188III TCNNGA 1 cut(s) 22
Hpy8I GTNNAC 2 cut(s) 160, 173
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 3 cut(s) 170, 190, 239
HpyCH4V TGCA 1 cut(s) 229
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 1 cut(s) 78
Hsp92II CATG 2 cut(s) 25, 212
HspAI GCGC 1 cut(s) 206
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 1 cut(s) 158
Lsp1109I GCAGC 1 cut(s) 213
LweI GCATC 1 cut(s) 64
MboII GAAGA 2 cut(s) 67, 130
MluCI AATT 1 cut(s) 247
MnlI CCTC 1 cut(s) 25
MroXI GAANNNNTTC 1 cut(s) 59
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 155
MspI CCGG 1 cut(s) 145
MspR9I CCNGG 2 cut(s) 145, 146
MwoI GCNNNNNNNGC 1 cut(s) 212
NciI CCSGG 2 cut(s) 145, 146
NlaIII CATG 2 cut(s) 25, 212
OliI CACNNNNGTG 1 cut(s) 155
PagI TCATGA 1 cut(s) 21
PdmI GAANNNNTTC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 93
PkrI GCNGC 1 cut(s) 228
PspPI GGNCC 1 cut(s) 147
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 1 cut(s) 227
Sau96I GGNCC 1 cut(s) 147
ScrFI CCNGG 2 cut(s) 145, 146
SetI ASST 2 cut(s) 159, 228
SfaNI GCATC 1 cut(s) 64
SmaI CCCGGG 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 1 cut(s) 247
SspI AATATT 1 cut(s) 181
StyD4I CCNGG 2 cut(s) 143, 144
TaaI ACNGT 3 cut(s) 170, 190, 239
TasI AATT 1 cut(s) 247
TfiI GAWTC 1 cut(s) 93
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 2 cut(s) 242, 248
TseI GCWGC 1 cut(s) 226
TspMI CCCGGG 1 cut(s) 144
TspRI CASTG 2 cut(s) 242, 248
XmaI CCCGGG 1 cut(s) 144
XmnI GAANNNNTTC 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.