Rmu_sc0003089.1_g000031

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003089.1
OG0000636
Physical Location & Seq
Reverse (-)
111807 .. 118795
6989 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003089.1_g000031.1.cds

Sequence Viewer

Length: 1005 bp
atggctctcatcaatcaggtcatgactctggaggaacttggtgcgggtgttgtgaagacattccaccctactgatgccgagttggtggtatgtatcgatctctacattaagctcctcatgaccccaatctcaggcaataagacattccccgagattcatatacatggccagatagttttaccgccttgtgagatgtggagaatctatcagccattcaagtttccacacaaaaattttatctacttctcccgggccaagaaggtgaaccccaacagttcactcaattctcgcacatttggctctgatgggggcatatggagcgagaccgaagctgcaattgctctttatgtcagtggaatcagtcataggtcacaggtcatagcggcgattctcggtggtgacggcgctagaaggcggcgaagtttgagtaaatctgacccgattggaagacacagtttcggcgacgtcgtggcttcatgcttcctgttgctcaggccgctatgggccgaaaccccgacgaactggggtcggttttcgcttctgtccaccttgactgtgttgtcgttgactgcatctcctattccagttccgttctcctctctcatcaccacgacttatattacaacaccaacaagaaatttggggtcccgccagccccgcctgtgcaacctcctctctgccagccccgtttgcgcagcctccagctcaagtcactgttgcgaacaccctcgatcagcccaccagcctcacttagcacctgcgccgcccactagccaaattcaccgaaccggccagcccacacgtgcatgctgggtgccctctcgccctcatctctatctcaattccacttccagaacccagaacccatctgggtcatccgctctgtccgattgcgtcatcatagcctcacctggtccaaccttgttccttgccttcgctcgcccactatccgagaagatcgatattgcctgtaccgtcctcctccagacttgccctgcacgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

334

Amino Acids

36.39

Weight (kDa)

9.41

Isoelectric Point (pI)

55.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 766
AasI GACNNNNNNGTC 1 cut(s) 559
AatII GACGTC 1 cut(s) 468
Acc16I TGCGCA 1 cut(s) 694
Acc36I ACCTGC 1 cut(s) 766
AccB1I GGYRCC 1 cut(s) 814
AccBSI CCGCTC 1 cut(s) 881
AciI CCGC 9 cut(s) 44, 182, 383, 415, 497, 649, 658, 764, 879
AcoI YGGCCR 2 cut(s) 166, 790
AcsI RAATTY 3 cut(s) 232, 637, 777
AcvI CACGTG 1 cut(s) 803
AcyI GRCGYC 1 cut(s) 465
AfaI GTAC 1 cut(s) 973
AfiI CCNNNNNNNGG 1 cut(s) 131
AflIII ACRYGT 1 cut(s) 800
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 1 cut(s) 910
AluBI AGCT 3 cut(s) 112, 332, 705
AluI AGCT 3 cut(s) 112, 332, 705
Alw26I GTCTC 1 cut(s) 317
Ama87I CYCGRG 2 cut(s) 149, 249
AoxI GGCC 5 cut(s) 166, 252, 494, 504, 790
ApeKI GCWGC 2 cut(s) 332, 695
ApoI RAATTY 3 cut(s) 232, 637, 777
Asp700I GAANNNNTTC 1 cut(s) 59
AspLEI GCGC 3 cut(s) 407, 695, 763
AspS9I GGNCC 4 cut(s) 252, 504, 645, 914
AsuC2I CCSGG 2 cut(s) 250, 251
AsuHPI GGTGA 5 cut(s) 274, 410, 598, 773, 900
AvaI CYCGRG 2 cut(s) 149, 249
AvaII GGWCC 2 cut(s) 645, 914
BaeGI GKGCMC 1 cut(s) 819
BalI TGGCCA 1 cut(s) 168
BanI GGYRCC 1 cut(s) 814
BbrPI CACGTG 1 cut(s) 803
BbsI GAAGAC 2 cut(s) 62, 454
BbvI GCAGC 2 cut(s) 319, 707
BccI CCATC 2 cut(s) 299, 874
BceAI ACGGC 1 cut(s) 418
BciT130I CCWGG 1 cut(s) 912
BcnI CCSGG 2 cut(s) 250, 251
BcoDI GTCTC 1 cut(s) 317
BfaI CTAG 3 cut(s) 408, 771, 1003
BfoI RGCGCY 1 cut(s) 408
BfuAI ACCTGC 1 cut(s) 766
BisI GCNGC 6 cut(s) 333, 384, 416, 497, 696, 764
BlsI GCNGC 6 cut(s) 334, 385, 417, 498, 697, 765
Bme1390I CCNGG 3 cut(s) 250, 251, 912
Bme18I GGWCC 2 cut(s) 645, 914
BmeT110I CYCGRG 2 cut(s) 149, 249
BmgT120I GGNCC 4 cut(s) 252, 504, 645, 914
BmiI GGNNCC 3 cut(s) 646, 647, 816
BmrFI CCNGG 3 cut(s) 250, 251, 912
BmrI ACTGGG 1 cut(s) 532
BmsI GCATC 2 cut(s) 64, 581
BmuI ACTGGG 1 cut(s) 532
BpiI GAAGAC 2 cut(s) 62, 454
BpmI CTGGAG 3 cut(s) 50, 685, 968
Bpu10I CCTNAGC 1 cut(s) 491
BpuEI CTTGAG 1 cut(s) 691
BpuMI CCSGG 2 cut(s) 250, 251
Bsa29I ATCGAT 2 cut(s) 96, 960
BsaAI YACGTR 1 cut(s) 803
BsaHI GRCGYC 1 cut(s) 465
BsaI GGTCTC 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 249
BsaXI ACNNNNNCTCC 2 cut(s) 559, 589
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse118I RCCGGY 1 cut(s) 788
Bse1I ACTGG 2 cut(s) 527, 584
BseBI CCWGG 1 cut(s) 912
BseCI ATCGAT 2 cut(s) 96, 960
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 875
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMII CTCAG 2 cut(s) 144, 505
BseNI ACTGG 2 cut(s) 527, 584
BseRI GAGGAG 4 cut(s) 104, 586, 662, 971
BseSI GKGCMC 1 cut(s) 819
BseXI GCAGC 2 cut(s) 319, 707
BseYI CCCAGC 1 cut(s) 810
BsgI GTGCAG 1 cut(s) 981
BshFI GGCC 5 cut(s) 168, 254, 496, 506, 792
BshNI GGYRCC 1 cut(s) 814
BshVI ATCGAT 2 cut(s) 96, 960
BsiHKCI CYCGRG 2 cut(s) 149, 249
BsiSI CCGG 2 cut(s) 250, 789
BslFI GGGAC 1 cut(s) 631
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 317
BsmFI GGGAC 1 cut(s) 631
BsnI GGCC 5 cut(s) 168, 254, 496, 506, 792
Bso31I GGTCTC 1 cut(s) 317
BsoBI CYCGRG 2 cut(s) 149, 249
Bsp1286I GDGCHC 1 cut(s) 819
Bsp143I GATC 3 cut(s) 97, 731, 957
BspACI CCGC 9 cut(s) 44, 182, 383, 415, 497, 649, 658, 764, 879
BspANI GGCC 5 cut(s) 168, 254, 496, 506, 792
BspCNI CTCAG 2 cut(s) 143, 504
BspDI ATCGAT 2 cut(s) 96, 960
BspHI TCATGA 2 cut(s) 21, 117
BspLI GGNNCC 3 cut(s) 646, 647, 816
BspMI ACCTGC 1 cut(s) 766
BspT107I GGYRCC 1 cut(s) 814
BspTNI GGTCTC 1 cut(s) 317
BsrBI CCGCTC 1 cut(s) 881
BsrFI RCCGGY 1 cut(s) 788
BsrI ACTGG 2 cut(s) 527, 584
BssAI RCCGGY 1 cut(s) 788
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 3 cut(s) 97, 731, 957
BssNI GRCGYC 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 912
Bst4CI ACNGT 5 cut(s) 275, 455, 556, 716, 976
BstACI GRCGYC 1 cut(s) 465
BstBAI YACGTR 1 cut(s) 803
BstC8I GCNNGC 6 cut(s) 653, 682, 794, 808, 940, 1000
BstDEI CTNAG 3 cut(s) 130, 491, 751
BstF5I GGATG 1 cut(s) 875
BstH2I RGCGCY 1 cut(s) 408
BstHHI GCGC 3 cut(s) 407, 695, 763
BstKTI GATC 3 cut(s) 100, 734, 960
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 3 cut(s) 97, 731, 957
BstMWI GCNNNNNNNGC 7 cut(s) 297, 318, 338, 496, 657, 690, 999
BstNI CCWGG 1 cut(s) 912
BstNSI RCATGY 1 cut(s) 810
BstSCI CCNGG 3 cut(s) 248, 249, 910
BstSLI GKGCMC 1 cut(s) 819
BstV1I GCAGC 2 cut(s) 319, 707
BstV2I GAAGAC 2 cut(s) 62, 454
Bsu15I ATCGAT 2 cut(s) 96, 960
BsuRI GGCC 5 cut(s) 168, 254, 496, 506, 792
BsuTUI ATCGAT 2 cut(s) 96, 960
BtsCI GGATG 1 cut(s) 875
BtsIMutI CAGTG 2 cut(s) 358, 712
BveI ACCTGC 1 cut(s) 766
Cac8I GCNNGC 6 cut(s) 653, 682, 794, 808, 940, 1000
CciI TCATGA 2 cut(s) 21, 117
CfoI GCGC 3 cut(s) 407, 695, 763
Cfr10I RCCGGY 1 cut(s) 788
Cfr13I GGNCC 4 cut(s) 252, 504, 645, 914
Cfr9I CCCGGG 1 cut(s) 249
ClaI ATCGAT 2 cut(s) 96, 960
CseI GACGC 1 cut(s) 883
CsiI ACCWGGT 1 cut(s) 910
Csp6I GTAC 1 cut(s) 972
CviAII CATG 5 cut(s) 22, 118, 164, 477, 807
CviQI GTAC 1 cut(s) 972
DdeI CTNAG 3 cut(s) 130, 491, 751
DpnI GATC 3 cut(s) 99, 733, 959
DpnII GATC 3 cut(s) 97, 731, 957
DrdI GACNNNNNNGTC 1 cut(s) 559
DseDI GACNNNNNNGTC 1 cut(s) 559
EaeI YGGCCR 2 cut(s) 166, 790
Eco31I GGTCTC 1 cut(s) 317
Eco47I GGWCC 2 cut(s) 645, 914
Eco72I CACGTG 1 cut(s) 803
Eco88I CYCGRG 2 cut(s) 149, 249
EcoO109I RGGNCCY 1 cut(s) 645
EcoRII CCWGG 1 cut(s) 910
FaeI CATG 5 cut(s) 25, 121, 167, 480, 810
FaqI GGGAC 1 cut(s) 631
FatI CATG 5 cut(s) 21, 117, 163, 476, 806
FauI CCCGC 3 cut(s) 37, 656, 665
FauNDI CATATG 1 cut(s) 314
Fnu4HI GCNGC 6 cut(s) 333, 384, 416, 497, 696, 764
FokI GGATG 1 cut(s) 862
Fsp4HI GCNGC 6 cut(s) 333, 384, 416, 497, 696, 764
FspBI CTAG 3 cut(s) 408, 771, 1003
FspI TGCGCA 1 cut(s) 694
GlaI GCGC 3 cut(s) 406, 694, 762
GluI GCNGC 6 cut(s) 333, 384, 416, 497, 696, 764
GsaI CCCAGC 1 cut(s) 814
GsuI CTGGAG 3 cut(s) 50, 685, 968
HaeII RGCGCY 1 cut(s) 408
HaeIII GGCC 5 cut(s) 168, 254, 496, 506, 792
HapII CCGG 2 cut(s) 250, 789
HgaI GACGC 1 cut(s) 883
HhaI GCGC 3 cut(s) 407, 695, 763
Hin1I GRCGYC 1 cut(s) 465
Hin1II CATG 5 cut(s) 25, 121, 167, 480, 810
Hin6I GCGC 3 cut(s) 405, 693, 761
HinP1I GCGC 3 cut(s) 405, 693, 761
HincII GTYRAC 1 cut(s) 567
HindII GTYRAC 1 cut(s) 567
HinfI GANTC 5 cut(s) 25, 154, 201, 357, 388
HpaII CCGG 2 cut(s) 250, 789
HphI GGTGA 5 cut(s) 274, 410, 598, 773, 900
Hpy166II GTNNAC 4 cut(s) 265, 278, 546, 567
Hpy188I TCNGA 4 cut(s) 304, 436, 889, 952
Hpy188III TCNNGA 5 cut(s) 22, 29, 118, 852, 985
Hpy8I GTNNAC 4 cut(s) 265, 278, 546, 567
Hpy99I CGWCG 3 cut(s) 467, 470, 520
HpyAV CCTTC 3 cut(s) 253, 405, 943
HpyCH4III ACNGT 5 cut(s) 275, 455, 556, 716, 976
HpyCH4IV ACGT 2 cut(s) 465, 802
HpyCH4V TGCA 5 cut(s) 335, 572, 666, 806, 998
HpyF10VI GCNNNNNNNGC 7 cut(s) 297, 318, 338, 496, 657, 690, 999
HpyF3I CTNAG 3 cut(s) 130, 491, 751
HpySE526I ACGT 2 cut(s) 465, 802
Hsp92I GRCGYC 1 cut(s) 465
Hsp92II CATG 5 cut(s) 25, 121, 167, 480, 810
HspAI GCGC 3 cut(s) 405, 693, 761
KflI GGGWCCC 1 cut(s) 645
Kzo9I GATC 3 cut(s) 97, 731, 957
LmnI GCTCC 2 cut(s) 117, 318
Lsp1109I GCAGC 2 cut(s) 319, 707
LweI GCATC 2 cut(s) 64, 581
MabI ACCWGGT 1 cut(s) 910
MaeI CTAG 3 cut(s) 408, 771, 1003
MaeII ACGT 2 cut(s) 465, 802
MaeIII GTNAC 3 cut(s) 369, 398, 710
MalI GATC 3 cut(s) 99, 733, 959
MbiI CCGCTC 1 cut(s) 881
MboI GATC 3 cut(s) 97, 731, 957
MboII GAAGA 3 cut(s) 67, 459, 967
MfeI CAATTG 1 cut(s) 336
MhlI GDGCHC 1 cut(s) 819
MlsI TGGCCA 1 cut(s) 168
MluCI AATT 6 cut(s) 232, 283, 336, 637, 777, 841
MluNI TGGCCA 1 cut(s) 168
MlyI GAGTC 1 cut(s) 19
MmeI TCCRAC 1 cut(s) 941
Mox20I TGGCCA 1 cut(s) 168
MroXI GAANNNNTTC 1 cut(s) 59
MscI TGGCCA 1 cut(s) 168
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 2 cut(s) 162, 805
Msp20I TGGCCA 1 cut(s) 168
MspI CCGG 2 cut(s) 250, 789
MspR9I CCNGG 3 cut(s) 250, 251, 912
MunI CAATTG 1 cut(s) 336
MvaI CCWGG 1 cut(s) 912
MwoI GCNNNNNNNGC 7 cut(s) 297, 318, 338, 496, 657, 690, 999
NciI CCSGG 2 cut(s) 250, 251
NdeI CATATG 1 cut(s) 314
NdeII GATC 3 cut(s) 97, 731, 957
NlaIII CATG 5 cut(s) 25, 121, 167, 480, 810
NlaIV GGNNCC 3 cut(s) 646, 647, 816
NmeAIII GCCGAG 1 cut(s) 103
NmuCI GTSAC 3 cut(s) 369, 398, 710
NsbI TGCGCA 1 cut(s) 694
NspI RCATGY 1 cut(s) 810
PaeI GCATGC 1 cut(s) 810
PagI TCATGA 2 cut(s) 21, 117
PaqCI CACCTGC 1 cut(s) 766
PcsI WCGNNNNNNNCGW 1 cut(s) 465
PdmI GAANNNNTTC 1 cut(s) 59
PfeI GAWTC 4 cut(s) 154, 201, 357, 388
PkrI GCNGC 6 cut(s) 334, 385, 417, 498, 697, 765
PleI GAGTC 1 cut(s) 19
PmaCI CACGTG 1 cut(s) 803
PmlI CACGTG 1 cut(s) 803
PpsI GAGTC 1 cut(s) 19
Ppu21I YACGTR 1 cut(s) 803
PpuMI RGGWCCY 1 cut(s) 645
Psp5II RGGWCCY 1 cut(s) 645
Psp6I CCWGG 1 cut(s) 910
PspCI CACGTG 1 cut(s) 803
PspFI CCCAGC 1 cut(s) 810
PspGI CCWGG 1 cut(s) 910
PspN4I GGNNCC 3 cut(s) 646, 647, 816
PspPI GGNCC 4 cut(s) 252, 504, 645, 914
PspPPI RGGWCCY 1 cut(s) 645
RsaI GTAC 1 cut(s) 973
RsaNI GTAC 1 cut(s) 972
RseI CAYNNNNRTG 2 cut(s) 162, 805
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 6 cut(s) 333, 384, 416, 497, 696, 764
Sau3AI GATC 3 cut(s) 97, 731, 957
Sau96I GGNCC 4 cut(s) 252, 504, 645, 914
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 3 cut(s) 250, 251, 912
SduI GDGCHC 1 cut(s) 819
SexAI ACCWGGT 1 cut(s) 910
SfaNI GCATC 2 cut(s) 64, 581
SinI GGWCC 2 cut(s) 645, 914
SmaI CCCGGG 1 cut(s) 251
SmiMI CAYNNNNRTG 2 cut(s) 162, 805
SmlI CTYRAG 1 cut(s) 706
SmoI CTYRAG 1 cut(s) 706
SphI GCATGC 1 cut(s) 810
Sse9I AATT 6 cut(s) 232, 283, 336, 637, 777, 841
SsiI CCGC 9 cut(s) 44, 182, 383, 415, 497, 649, 658, 764, 879
SspMI CTAG 3 cut(s) 408, 771, 1003
StyD4I CCNGG 3 cut(s) 248, 249, 910
TaaI ACNGT 5 cut(s) 275, 455, 556, 716, 976
TaiI ACGT 2 cut(s) 468, 805
TaqI TCGA 3 cut(s) 96, 730, 960
TaqII GACCGA 1 cut(s) 341
TasI AATT 6 cut(s) 232, 283, 336, 637, 777, 841
TauI GCSGC 4 cut(s) 386, 418, 499, 766
TfiI GAWTC 4 cut(s) 154, 201, 357, 388
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 2 cut(s) 358, 719
TseFI GTSAC 3 cut(s) 369, 398, 710
TseI GCWGC 2 cut(s) 332, 695
Tsp45I GTSAC 3 cut(s) 369, 398, 710
TspDTI ATGAA 2 cut(s) 146, 465
TspGWI ACGGA 1 cut(s) 579
TspMI CCCGGG 1 cut(s) 249
TspRI CASTG 2 cut(s) 358, 719
VpaK11BI GGWCC 2 cut(s) 645, 914
XapI RAATTY 3 cut(s) 232, 637, 777
XceI RCATGY 1 cut(s) 810
XcmI CCANNNNNNNNNTGG 1 cut(s) 866
XmaI CCCGGG 1 cut(s) 249
XmnI GAANNNNTTC 1 cut(s) 59
XspI CTAG 3 cut(s) 408, 771, 1003
ZraI GACGTC 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.