FvH4_5g37342
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000636
Physical Location & Seq
Reverse (-)
27461872 .. 27463696
1825 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37342.t1

Sequence Viewer

Length: 1197 bp
ATGACATGTACCGGTGTGATTTCTAAATCAATTCAAGTAGAGCTAGTGATGGATCAGTTCGCCACTCTGGACGAACTTGATGTTGGTGTGGTGACTACATTTCAACCTACCGAAGAAGATTTGTTGTGTTATTATCTATACAACAAGGTCTTCGAAACCCCATTCTCCAACTACAAGACCTTCCCGGAGATCTGTATCTACGGCAAGGATGGGTTGCCTCCTAGGCAGATATGGAGATTGTATCAGCAGTGCAAGTTTCCTCACCAGGATTTCATCTACTTCTTCTCCAGGGCCGAAAAGTTAAACCCTAACAAGTCACGAAATTCTCGAAAAGTTGGCACTGATGGTTATAAATGGAGTGAGACTGAAACTTTCAAGTCCATCTATGTCGCTACAAATAAAGAGGCGTTTGGGTCACTGAGGAAGTTTCGGTACGAGAAGAATTTGAACAAGAAGGAAAGAGATATTTGTGATGAGCACCATGGTGCTTGGTTAATGGATGAGTTCACCATTAACCATGCACCGAATCTGGCTTTGTACCGGCTCAAGGTGAATGCCAAAGGTGGAGACAGAAAGAGGAAGTCATCTGCGGCTGAGAAAAATGTGGAGGATGAGAATTTGACAAGAAGACAGTCTCTCAAAAAAAGAAAACGCGAACCGAGAAGATCATCAGATCAGAACAGTTGCATGTCTGAGCAACAAGAAGGGACTACTTCTCAGCAAATGCCATTTTCCTATCTTAATGAAGATGATCAAGTGGCCCAGGTGGTTCCAGAAAACAGTAACAACAACTTTCATGTTGAGCTTGAGCAGATTCTGATGAGTGACGATGATTGTGTGGATGATGAGAATCCAATTTTCTCTCCCGCTAAATTGTCGAATTATGATGCTCAGTTTAGGGCTTCTGTTGCTCAATCAATAGCTATTGAGCAGCAAACACATCAAGAACAATATTCAGATTATTCAGTGGCACCGCAACAGCAGTTGGAACCTGAGAATAGGTGTCAAGAGGAGTACGAAGTACAACTACCACAACAAGATCAGGCCTCTTCCTCTCATTCTAACGAGCAGCAGCTTCTCGCCAATAACGATTTTGATATTTCACTCGATGACCCCTACTTTCAGTCAGATGAATTCATCAATTTACTCCGTACTACTGAAAATCAACTGCCGTGGTGGAATCCTGATGGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

399

Amino Acids

46.41

Weight (kDa)

4.85

Isoelectric Point (pI)

54.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 33 - 170 2.4e-14 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
AccB1I GGYRCC 1 cut(s) 970
AccII CGCG 1 cut(s) 654
AciI CCGC 3 cut(s) 590, 867, 974
AclWI GGATC 1 cut(s) 60
AcsI RAATTY 4 cut(s) 322, 442, 616, 1133
AfaI GTAC 6 cut(s) 10, 434, 539, 1016, 1023, 1153
AfiI CCNNNNNNNGG 1 cut(s) 547
AflIII ACRYGT 1 cut(s) 5
AgeI ACCGGT 1 cut(s) 11
AgsI TTSAA 4 cut(s) 35, 104, 376, 448
AjnI CCWGG 3 cut(s) 264, 287, 762
AjuI GAANNNNNNNTTGG 2 cut(s) 66, 98
AleI CACNNNNGTG 1 cut(s) 483
AluBI AGCT 4 cut(s) 43, 805, 923, 1075
AluI AGCT 4 cut(s) 43, 805, 923, 1075
Alw21I GWGCWC 1 cut(s) 480
Alw26I GTCTC 3 cut(s) 356, 561, 639
AlwI GGATC 1 cut(s) 60
AlwNI CAGNNNCTG 1 cut(s) 817
AoxI GGCC 3 cut(s) 291, 759, 1044
ApeKI GCWGC 3 cut(s) 931, 1069, 1072
ApoI RAATTY 4 cut(s) 322, 442, 616, 1133
AsiGI ACCGGT 1 cut(s) 11
AspA2I CCTAGG 1 cut(s) 221
AspS9I GGNCC 2 cut(s) 291, 760
AsuC2I CCSGG 1 cut(s) 185
AsuHPI GGTGA 4 cut(s) 103, 254, 499, 562
AsuII TTCGAA 1 cut(s) 153
AvrII CCTAGG 1 cut(s) 221
BanI GGYRCC 1 cut(s) 970
BarI GAAGNNNNNNTAC 4 cut(s) 416, 448, 1011, 1043
BbsI GAAGAC 2 cut(s) 142, 634
Bbv12I GWGCWC 1 cut(s) 480
BbvI GCAGC 3 cut(s) 943, 1081, 1084
BccI CCATC 5 cut(s) 43, 203, 338, 389, 1181
BceAI ACGGC 2 cut(s) 217, 1156
BciT130I CCWGG 3 cut(s) 266, 289, 764
BclI TGATCA 1 cut(s) 751
BcnI CCSGG 1 cut(s) 185
BcoDI GTCTC 3 cut(s) 356, 561, 639
BfaI CTAG 2 cut(s) 44, 222
BglI GCCNNNNNGGC 1 cut(s) 223
BglII AGATCT 1 cut(s) 189
BisI GCNGC 4 cut(s) 591, 932, 1070, 1073
BlnI CCTAGG 1 cut(s) 221
BlsI GCNGC 4 cut(s) 592, 933, 1071, 1074
Bme1390I CCNGG 4 cut(s) 185, 266, 289, 764
BmgT120I GGNCC 2 cut(s) 291, 760
BmiI GGNNCC 3 cut(s) 771, 972, 990
BmrFI CCNGG 4 cut(s) 185, 266, 289, 764
BmsI GCATC 1 cut(s) 877
BpiI GAAGAC 2 cut(s) 142, 634
BpmI CTGGAG 1 cut(s) 271
Bpu14I TTCGAA 1 cut(s) 153
BpuEI CTTGAG 2 cut(s) 530, 827
BpuMI CCSGG 1 cut(s) 185
BsaBI GATNNNNATC 2 cut(s) 194, 849
BsaJI CCNNGG 5 cut(s) 221, 288, 481, 762, 1172
BsaWI WCCGGW 1 cut(s) 11
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 1 cut(s) 547
Bse118I RCCGGY 2 cut(s) 11, 540
Bse8I GATNNNNATC 2 cut(s) 194, 849
BseBI CCWGG 3 cut(s) 266, 289, 764
BseDI CCNNGG 5 cut(s) 221, 288, 481, 762, 1172
BseGI GGATG 4 cut(s) 214, 505, 616, 847
BseJI GATNNNNATC 2 cut(s) 194, 849
BseLI CCNNNNNNNGG 1 cut(s) 547
BseMII CTCAG 6 cut(s) 410, 585, 684, 731, 905, 984
BseRI GAGGAG 1 cut(s) 1025
BseXI GCAGC 3 cut(s) 943, 1081, 1084
Bsh1236I CGCG 1 cut(s) 654
BshFI GGCC 3 cut(s) 293, 761, 1046
BshNI GGYRCC 1 cut(s) 970
BshTI ACCGGT 1 cut(s) 11
BsiHKAI GWGCWC 1 cut(s) 480
BsiSI CCGG 3 cut(s) 12, 185, 541
BslFI GGGAC 1 cut(s) 721
BslI CCNNNNNNNGG 1 cut(s) 547
BsmAI GTCTC 3 cut(s) 356, 561, 639
BsmFI GGGAC 1 cut(s) 721
BsmI GAATGC 1 cut(s) 559
BsnI GGCC 3 cut(s) 293, 761, 1046
Bsp119I TTCGAA 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 480
Bsp143I GATC 6 cut(s) 52, 189, 665, 673, 751, 1039
Bsp19I CCATGG 1 cut(s) 481
BspACI CCGC 3 cut(s) 590, 867, 974
BspANI GGCC 3 cut(s) 293, 761, 1046
BspCNI CTCAG 6 cut(s) 411, 586, 685, 730, 904, 985
BspFNI CGCG 1 cut(s) 654
BspLI GGNNCC 3 cut(s) 771, 972, 990
BspPI GGATC 1 cut(s) 60
BspT104I TTCGAA 1 cut(s) 153
BspT107I GGYRCC 1 cut(s) 970
BsrFI RCCGGY 2 cut(s) 11, 540
BssAI RCCGGY 2 cut(s) 11, 540
BssECI CCNNGG 5 cut(s) 221, 288, 481, 762, 1172
BssMI GATC 6 cut(s) 52, 189, 665, 673, 751, 1039
BssT1I CCWWGG 2 cut(s) 221, 481
Bst2UI CCWGG 3 cut(s) 266, 289, 764
Bst4CI ACNGT 3 cut(s) 633, 683, 782
Bst6I CTCTTC 1 cut(s) 1054
BstBI TTCGAA 1 cut(s) 153
BstDEI CTNAG 6 cut(s) 419, 594, 693, 717, 891, 993
BstDSI CCRYGG 2 cut(s) 481, 1172
BstF5I GGATG 4 cut(s) 214, 505, 616, 847
BstFNI CGCG 1 cut(s) 654
BstKTI GATC 6 cut(s) 55, 192, 668, 676, 754, 1042
BstMAI GTCTC 3 cut(s) 356, 561, 639
BstMBI GATC 6 cut(s) 52, 189, 665, 673, 751, 1039
BstMWI GCNNNNNNNGC 2 cut(s) 223, 908
BstNI CCWGG 3 cut(s) 266, 289, 764
BstNSI RCATGY 2 cut(s) 9, 691
BstSCI CCNGG 4 cut(s) 183, 264, 287, 762
BstUI CGCG 1 cut(s) 654
BstV1I GCAGC 3 cut(s) 943, 1081, 1084
BstV2I GAAGAC 2 cut(s) 142, 634
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
BsuRI GGCC 3 cut(s) 293, 761, 1046
BtgI CCRYGG 2 cut(s) 481, 1172
BtsCI GGATG 4 cut(s) 214, 505, 616, 847
BtsI GCAGTG 1 cut(s) 254
BtsIMutI CAGTG 4 cut(s) 254, 339, 416, 972
CaiI CAGNNNCTG 1 cut(s) 817
Cfr10I RCCGGY 2 cut(s) 11, 540
Cfr13I GGNCC 2 cut(s) 291, 760
Csp6I GTAC 6 cut(s) 9, 433, 538, 1015, 1022, 1152
CspAI ACCGGT 1 cut(s) 11
CspCI CAANNNNNGTGG 2 cut(s) 1154, 1189
CviAII CATG 5 cut(s) 6, 482, 518, 688, 797
CviQI GTAC 6 cut(s) 9, 433, 538, 1015, 1022, 1152
DdeI CTNAG 6 cut(s) 419, 594, 693, 717, 891, 993
DpnI GATC 6 cut(s) 54, 191, 667, 675, 753, 1041
DpnII GATC 6 cut(s) 52, 189, 665, 673, 751, 1039
Eam1104I CTCTTC 1 cut(s) 1054
EarI CTCTTC 1 cut(s) 1054
Eco130I CCWWGG 2 cut(s) 221, 481
Eco147I AGGCCT 1 cut(s) 1046
EcoRI GAATTC 1 cut(s) 1133
EcoRII CCWGG 3 cut(s) 264, 287, 762
EcoT14I CCWWGG 2 cut(s) 221, 481
ErhI CCWWGG 2 cut(s) 221, 481
FaeI CATG 5 cut(s) 9, 485, 521, 691, 800
FaqI GGGAC 1 cut(s) 721
FatI CATG 5 cut(s) 5, 481, 517, 687, 796
FauI CCCGC 1 cut(s) 874
FbaI TGATCA 1 cut(s) 751
Fnu4HI GCNGC 4 cut(s) 591, 932, 1070, 1073
FokI GGATG 4 cut(s) 221, 512, 623, 854
Fsp4HI GCNGC 4 cut(s) 591, 932, 1070, 1073
FspBI CTAG 2 cut(s) 44, 222
GluI GCNGC 4 cut(s) 591, 932, 1070, 1073
GsuI CTGGAG 1 cut(s) 271
HaeIII GGCC 3 cut(s) 293, 761, 1046
HapII CCGG 3 cut(s) 12, 185, 541
Hin1II CATG 5 cut(s) 9, 485, 521, 691, 800
HinfI GANTC 4 cut(s) 526, 814, 850, 1180
HpaII CCGG 3 cut(s) 12, 185, 541
HphI GGTGA 4 cut(s) 103, 254, 499, 562
Hpy166II GTNNAC 1 cut(s) 507
Hpy188I TCNGA 6 cut(s) 673, 678, 694, 819, 958, 1129
Hpy188III TCNNGA 7 cut(s) 68, 318, 327, 773, 944, 1007, 1184
Hpy8I GTNNAC 1 cut(s) 507
HpyAV CCTTC 3 cut(s) 190, 448, 698
HpyCH4III ACNGT 3 cut(s) 633, 683, 782
HpyCH4V TGCA 3 cut(s) 252, 521, 687
HpyF10VI GCNNNNNNNGC 2 cut(s) 223, 908
HpyF3I CTNAG 6 cut(s) 419, 594, 693, 717, 891, 993
Hsp92II CATG 5 cut(s) 9, 485, 521, 691, 800
Ksp22I TGATCA 1 cut(s) 751
Kzo9I GATC 6 cut(s) 52, 189, 665, 673, 751, 1039
Lsp1109I GCAGC 3 cut(s) 943, 1081, 1084
LweI GCATC 1 cut(s) 877
MaeI CTAG 2 cut(s) 44, 222
MaeIII GTNAC 5 cut(s) 91, 315, 414, 782, 824
MalI GATC 6 cut(s) 54, 191, 667, 675, 753, 1041
MboI GATC 6 cut(s) 52, 189, 665, 673, 751, 1039
MboII GAAGA 9 cut(s) 125, 128, 142, 274, 451, 639, 675, 758, 1041
MflI RGATCY 1 cut(s) 189
MhlI GDGCHC 1 cut(s) 480
MluCI AATT 9 cut(s) 30, 322, 442, 616, 855, 872, 880, 1133, 1141
MmeI TCCRAC 2 cut(s) 192, 966
MnlI CCTC 9 cut(s) 228, 270, 397, 414, 570, 601, 1003, 1057, 1063
MseI TTAA 4 cut(s) 302, 494, 513, 741
MslI CAYNNNNRTG 1 cut(s) 483
MspI CCGG 3 cut(s) 12, 185, 541
MspR9I CCNGG 4 cut(s) 185, 266, 289, 764
Mva1269I GAATGC 1 cut(s) 559
MvaI CCWGG 3 cut(s) 266, 289, 764
MvnI CGCG 1 cut(s) 654
MwoI GCNNNNNNNGC 2 cut(s) 223, 908
NciI CCSGG 1 cut(s) 185
NcoI CCATGG 1 cut(s) 481
NdeII GATC 6 cut(s) 52, 189, 665, 673, 751, 1039
NlaIII CATG 5 cut(s) 9, 485, 521, 691, 800
NlaIV GGNNCC 3 cut(s) 771, 972, 990
NmuCI GTSAC 4 cut(s) 91, 315, 414, 824
NspI RCATGY 2 cut(s) 9, 691
NspV TTCGAA 1 cut(s) 153
OliI CACNNNNGTG 1 cut(s) 483
PceI AGGCCT 1 cut(s) 1046
PciI ACATGT 1 cut(s) 5
PcsI WCGNNNNNNNCGW 2 cut(s) 325, 1086
PctI GAATGC 1 cut(s) 559
PfeI GAWTC 4 cut(s) 526, 814, 850, 1180
PfoI TCCNGGA 1 cut(s) 183
PinAI ACCGGT 1 cut(s) 11
PkrI GCNGC 4 cut(s) 592, 933, 1071, 1074
PscI ACATGT 1 cut(s) 5
PsiI TTATAA 1 cut(s) 351
Psp6I CCWGG 3 cut(s) 264, 287, 762
PspGI CCWGG 3 cut(s) 264, 287, 762
PspN4I GGNNCC 3 cut(s) 771, 972, 990
PspPI GGNCC 2 cut(s) 291, 760
PstNI CAGNNNCTG 1 cut(s) 817
PsuI RGATCY 1 cut(s) 189
RsaI GTAC 6 cut(s) 10, 434, 539, 1016, 1023, 1153
RsaNI GTAC 6 cut(s) 9, 433, 538, 1015, 1022, 1152
RseI CAYNNNNRTG 1 cut(s) 483
SaqAI TTAA 4 cut(s) 302, 494, 513, 741
SatI GCNGC 4 cut(s) 591, 932, 1070, 1073
Sau3AI GATC 6 cut(s) 52, 189, 665, 673, 751, 1039
Sau96I GGNCC 2 cut(s) 291, 760
ScrFI CCNGG 4 cut(s) 185, 266, 289, 764
SduI GDGCHC 1 cut(s) 480
SfaNI GCATC 1 cut(s) 877
SfuI TTCGAA 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 2 cut(s) 545, 806
SmoI CTYRAG 2 cut(s) 545, 806
Sse9I AATT 9 cut(s) 30, 322, 442, 616, 855, 872, 880, 1133, 1141
SseBI AGGCCT 1 cut(s) 1046
SsiI CCGC 3 cut(s) 590, 867, 974
SspI AATATT 1 cut(s) 953
SspMI CTAG 2 cut(s) 44, 222
StuI AGGCCT 1 cut(s) 1046
StyD4I CCNGG 4 cut(s) 183, 264, 287, 762
StyI CCWWGG 2 cut(s) 221, 481
TaaI ACNGT 3 cut(s) 633, 683, 782
TaqI TCGA 4 cut(s) 153, 328, 878, 1107
TasI AATT 9 cut(s) 30, 322, 442, 616, 855, 872, 880, 1133, 1141
TatI WGTACW 1 cut(s) 1021
TauI GCSGC 1 cut(s) 593
TfiI GAWTC 4 cut(s) 526, 814, 850, 1180
Tru1I TTAA 4 cut(s) 302, 494, 513, 741
Tru9I TTAA 4 cut(s) 302, 494, 513, 741
TscAI CASTG 4 cut(s) 254, 346, 423, 972
TseFI GTSAC 4 cut(s) 91, 315, 414, 824
TseI GCWGC 3 cut(s) 931, 1069, 1072
Tsp45I GTSAC 4 cut(s) 91, 315, 414, 824
TspDTI ATGAA 5 cut(s) 262, 759, 785, 1126, 1146
TspGWI ACGGA 1 cut(s) 1139
TspRI CASTG 4 cut(s) 254, 346, 423, 972
XapI RAATTY 4 cut(s) 322, 442, 616, 1133
XceI RCATGY 2 cut(s) 9, 691
XmaJI CCTAGG 1 cut(s) 221
XspI CTAG 2 cut(s) 44, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.