Rmu_sc0018978.1_g000001
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018978.1
OG0000636
Physical Location & Seq
Reverse (-)
434 .. 1624
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018978.1_g000001.1.cds

Sequence Viewer

Length: 1191 bp
atggctctggtagatcaattcatgactctggatcaacttgatgtgggtgtggtgaagacgtttcaccctactgaagctgagttggtgggtttctttctatacaacaagatttccatggtctcaaacccaggcaatcatattcagacattccctgaaatttgtatatacggcgagacaggcttaccaccttgggagatatggagggtgtatcagcaattcaagtttccccaccaagattttctctacttcttctcctgggccaagaaagtgagccccaacaaatctcgcaactctcgcacggttggctctgatggaggaacgtggagcgagacgggagccgggaggcctgtgtatatcagtggaagtgaagaggcgtttgggaaagtcaggaagtttcggtatgaaaagaacaaggacaaaacgtttgtgcatcacgctgcttggttgatggaggagtacaccatcaaccaagcaccagatctggctttgtgccgacttaaaatcaatgataaaggaggaggaagaaaaaagaggaagaggagttctgatgacactaatgaggatcagaatgtgagaagcaaaaagtgtttgaaaaaccgaaaagttgaaccgagaagagatcaaactagtttcttcgatcctgaggagcaacaagaaggcagtgcttcctttgctactactacttcacagctaattctctccccctatcatcatgaagatgatcaagcggttcaggtggttccggagaacaattacgattatgacgagctgcagcagatcctctttagtgatgatgattgtacggatgagaatctaatgttctctcccactatcttgtttgatgatgctcagcttatggtttctgttgatcaatcaatagccagtgagcaacaacaacaacaagattcacttgcgccgcaacagcaattggaacctgacaataggtgtcaagaggaggaccaaatacaacaacaacaagatcagccctcttcctctcattctcatgagcagcagcagctcatcggtgatggcgatctgatgatttatggccaacatgactttaatattccactcgataatgacttcttatggtcagatgaatttaatggactcttgactcatgaagatcagctaggagctgtgccatggcgggatagtgatgatcagtttcagttttctgacatcttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

396

Amino Acids

45.69

Weight (kDa)

4.61

Isoelectric Point (pI)

52.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 742
AciI CCGC 3 cut(s) 728, 917, 1150
AclI AACGTT 1 cut(s) 422
AclWI GGATC 4 cut(s) 39, 570, 632, 772
AcoI YGGCCR 1 cut(s) 1048
AcsI RAATTY 2 cut(s) 156, 1100
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 2 cut(s) 458, 802
AgsI TTSAA 3 cut(s) 220, 592, 608
AhlI ACTAGT 1 cut(s) 626
AjnI CCWGG 2 cut(s) 127, 254
AjuI GAANNNNNNNTTGG 2 cut(s) 360, 392
AloI GAACNNNNNNTCC 2 cut(s) 526, 558
AluBI AGCT 7 cut(s) 77, 691, 769, 853, 1018, 1132, 1139
AluI AGCT 7 cut(s) 77, 691, 769, 853, 1018, 1132, 1139
Alw26I GTCTC 3 cut(s) 124, 167, 323
AlwI GGATC 4 cut(s) 39, 570, 632, 772
Aor13HI TCCGGA 1 cut(s) 742
AoxI GGCC 3 cut(s) 258, 344, 1048
ApeKI GCWGC 6 cut(s) 437, 769, 772, 1009, 1012, 1015
ApoI RAATTY 2 cut(s) 156, 1100
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
AspLEI GCGC 1 cut(s) 916
AspS9I GGNCC 2 cut(s) 258, 958
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 3 cut(s) 56, 64, 1037
AvaII GGWCC 1 cut(s) 958
AxyI CCTNAGG 1 cut(s) 642
BalI TGGCCA 1 cut(s) 1050
BanII GRGCYC 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 62
BbvI GCAGC 6 cut(s) 424, 756, 784, 1021, 1024, 1027
BccI CCATC 4 cut(s) 305, 442, 470, 1022
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 2 cut(s) 129, 256
BclI TGATCA 3 cut(s) 721, 868, 1162
BcnI CCSGG 1 cut(s) 340
BcoDI GTCTC 3 cut(s) 124, 167, 323
BcuI ACTAGT 1 cut(s) 626
BfaI CTAG 2 cut(s) 627, 1133
BfmI CTRYAG 1 cut(s) 770
BglII AGATCT 1 cut(s) 478
BisI GCNGC 7 cut(s) 438, 770, 773, 917, 1010, 1013, 1016
BlpI GCTNAGC 1 cut(s) 849
BlsI GCNGC 7 cut(s) 439, 771, 774, 918, 1011, 1014, 1017
Bme1390I CCNGG 3 cut(s) 129, 256, 340
Bme18I GGWCC 1 cut(s) 958
BmgT120I GGNCC 2 cut(s) 258, 958
BmiI GGNNCC 3 cut(s) 337, 741, 933
BmrFI CCNGG 3 cut(s) 129, 256, 340
BmsI GCATC 2 cut(s) 439, 835
BpiI GAAGAC 1 cut(s) 62
Bpu1102I GCTNAGC 1 cut(s) 849
BpuMI CCSGG 1 cut(s) 340
BsaBI GATNNNNATC 2 cut(s) 810, 1032
BsaI GGTCTC 1 cut(s) 124
BsaJI CCNNGG 5 cut(s) 114, 127, 188, 255, 1145
BsaWI WCCGGW 1 cut(s) 742
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bse1I ACTGG 1 cut(s) 882
Bse21I CCTNAGG 1 cut(s) 642
Bse8I GATNNNNATC 2 cut(s) 810, 1032
BseAI TCCGGA 1 cut(s) 742
BseBI CCWGG 2 cut(s) 129, 256
BseDI CCNNGG 5 cut(s) 114, 127, 188, 255, 1145
BseGI GGATG 1 cut(s) 811
BseJI GATNNNNATC 2 cut(s) 810, 1032
BseMII CTCAG 3 cut(s) 69, 633, 863
BseNI ACTGG 1 cut(s) 882
BseRI GAGGAG 5 cut(s) 467, 531, 553, 659, 968
BseXI GCAGC 6 cut(s) 424, 756, 784, 1021, 1024, 1027
BshFI GGCC 3 cut(s) 260, 346, 1050
BsiSI CCGG 2 cut(s) 339, 743
BsmAI GTCTC 3 cut(s) 124, 167, 323
BsmBI CGTCTC 1 cut(s) 323
BsnI GGCC 3 cut(s) 260, 346, 1050
Bso31I GGTCTC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 275
Bsp13I TCCGGA 1 cut(s) 742
Bsp1720I GCTNAGC 1 cut(s) 849
Bsp19I CCATGG 2 cut(s) 114, 1145
BspACI CCGC 3 cut(s) 728, 917, 1150
BspANI GGCC 3 cut(s) 260, 346, 1050
BspCNI CTCAG 3 cut(s) 70, 634, 862
BspEI TCCGGA 1 cut(s) 742
BspHI TCATGA 4 cut(s) 21, 712, 1003, 1120
BspLI GGNNCC 3 cut(s) 337, 741, 933
BspMAI CTGCAG 1 cut(s) 774
BspPI GGATC 4 cut(s) 39, 570, 632, 772
BspTNI GGTCTC 1 cut(s) 124
BsrI ACTGG 1 cut(s) 882
BssECI CCNNGG 5 cut(s) 114, 127, 188, 255, 1145
BssT1I CCWWGG 3 cut(s) 114, 188, 1145
Bst2UI CCWGG 2 cut(s) 129, 256
Bst4CI ACNGT 1 cut(s) 301
Bst6I CTCTTC 4 cut(s) 363, 530, 610, 994
BstDEI CTNAG 3 cut(s) 78, 642, 849
BstDSI CCRYGG 2 cut(s) 114, 1145
BstF5I GGATG 1 cut(s) 811
BstHHI GCGC 1 cut(s) 916
BstMAI GTCTC 3 cut(s) 124, 167, 323
BstMWI GCNNNNNNNGC 6 cut(s) 177, 294, 303, 671, 922, 1015
BstNI CCWGG 2 cut(s) 129, 256
BstSCI CCNGG 3 cut(s) 127, 254, 338
BstSFI CTRYAG 1 cut(s) 770
BstV1I GCAGC 6 cut(s) 424, 756, 784, 1021, 1024, 1027
BstV2I GAAGAC 1 cut(s) 62
BstX2I RGATCY 2 cut(s) 478, 777
BstYI RGATCY 2 cut(s) 478, 777
Bsu36I CCTNAGG 1 cut(s) 642
BsuRI GGCC 3 cut(s) 260, 346, 1050
BtgI CCRYGG 2 cut(s) 114, 1145
BtsCI GGATG 1 cut(s) 811
BtsI GCAGTG 1 cut(s) 667
BtsIMutI CAGTG 3 cut(s) 364, 667, 889
CciI TCATGA 4 cut(s) 21, 712, 1003, 1120
CfoI GCGC 1 cut(s) 916
Cfr13I GGNCC 2 cut(s) 258, 958
Csp6I GTAC 2 cut(s) 457, 801
CviAII CATG 7 cut(s) 22, 115, 713, 1004, 1055, 1121, 1146
CviQI GTAC 2 cut(s) 457, 801
DdeI CTNAG 3 cut(s) 78, 642, 849
EaeI YGGCCR 1 cut(s) 1048
Eam1104I CTCTTC 4 cut(s) 363, 530, 610, 994
EarI CTCTTC 4 cut(s) 363, 530, 610, 994
Eco130I CCWWGG 3 cut(s) 114, 188, 1145
Eco147I AGGCCT 1 cut(s) 346
Eco24I GRGCYC 1 cut(s) 275
Eco31I GGTCTC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 958
Eco57I CTGAAG 1 cut(s) 93
Eco81I CCTNAGG 1 cut(s) 642
EcoRII CCWGG 2 cut(s) 127, 254
EcoT14I CCWWGG 3 cut(s) 114, 188, 1145
EcoT38I GRGCYC 1 cut(s) 275
ErhI CCWWGG 3 cut(s) 114, 188, 1145
Esp3I CGTCTC 1 cut(s) 323
FaeI CATG 7 cut(s) 25, 118, 716, 1007, 1058, 1124, 1149
FalI AAGNNNNNCTT 2 cut(s) 894, 926
FatI CATG 7 cut(s) 21, 114, 712, 1003, 1054, 1120, 1145
FauI CCCGC 1 cut(s) 1143
FbaI TGATCA 3 cut(s) 721, 868, 1162
Fnu4HI GCNGC 7 cut(s) 438, 770, 773, 917, 1010, 1013, 1016
FokI GGATG 1 cut(s) 818
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 7 cut(s) 438, 770, 773, 917, 1010, 1013, 1016
FspBI CTAG 2 cut(s) 627, 1133
GlaI GCGC 1 cut(s) 915
GluI GCNGC 7 cut(s) 438, 770, 773, 917, 1010, 1013, 1016
HaeIII GGCC 3 cut(s) 260, 346, 1050
HapII CCGG 2 cut(s) 339, 743
HhaI GCGC 1 cut(s) 916
Hin1II CATG 7 cut(s) 25, 118, 716, 1007, 1058, 1124, 1149
Hin6I GCGC 1 cut(s) 914
HinP1I GCGC 1 cut(s) 914
HinfI GANTC 5 cut(s) 25, 811, 905, 1110, 1117
HpaII CCGG 2 cut(s) 339, 743
HphI GGTGA 3 cut(s) 56, 64, 1037
Hpy166II GTNNAC 1 cut(s) 459
Hpy188I TCNGA 7 cut(s) 144, 310, 547, 567, 1038, 1096, 1180
Hpy8I GTNNAC 1 cut(s) 459
HpyAV CCTTC 1 cut(s) 650
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4IV ACGT 3 cut(s) 59, 320, 422
HpyCH4V TGCA 2 cut(s) 430, 772
HpyF10VI GCNNNNNNNGC 6 cut(s) 177, 294, 303, 671, 922, 1015
HpyF3I CTNAG 3 cut(s) 78, 642, 849
HpySE526I ACGT 3 cut(s) 59, 320, 422
Hsp92II CATG 7 cut(s) 25, 118, 716, 1007, 1058, 1124, 1149
HspAI GCGC 1 cut(s) 914
Kpn2I TCCGGA 1 cut(s) 742
Ksp22I TGATCA 3 cut(s) 721, 868, 1162
LmnI GCTCC 4 cut(s) 324, 335, 646, 1136
Lsp1109I GCAGC 6 cut(s) 424, 756, 784, 1021, 1024, 1027
LweI GCATC 2 cut(s) 439, 835
MaeI CTAG 2 cut(s) 627, 1133
MaeII ACGT 3 cut(s) 59, 320, 422
MfeI CAATTG 1 cut(s) 926
MflI RGATCY 2 cut(s) 478, 777
MhlI GDGCHC 1 cut(s) 275
MlsI TGGCCA 1 cut(s) 1050
MluCI AATT 7 cut(s) 17, 156, 215, 693, 751, 926, 1100
MluNI TGGCCA 1 cut(s) 1050
MlyI GAGTC 3 cut(s) 19, 1104, 1111
Mox20I TGGCCA 1 cut(s) 1050
MroI TCCGGA 1 cut(s) 742
MscI TGGCCA 1 cut(s) 1050
MseI TTAA 3 cut(s) 498, 1062, 1104
MslI CAYNNNNRTG 2 cut(s) 717, 1002
Msp20I TGGCCA 1 cut(s) 1050
MspI CCGG 2 cut(s) 339, 743
MspR9I CCNGG 3 cut(s) 129, 256, 340
MunI CAATTG 1 cut(s) 926
MvaI CCWGG 2 cut(s) 129, 256
MwoI GCNNNNNNNGC 6 cut(s) 177, 294, 303, 671, 922, 1015
NciI CCSGG 1 cut(s) 340
NcoI CCATGG 2 cut(s) 114, 1145
NlaIII CATG 7 cut(s) 25, 118, 716, 1007, 1058, 1124, 1149
NlaIV GGNNCC 3 cut(s) 337, 741, 933
PagI TCATGA 4 cut(s) 21, 712, 1003, 1120
PceI AGGCCT 1 cut(s) 346
PcsI WCGNNNNNNNCGW 2 cut(s) 762, 1029
PfeI GAWTC 2 cut(s) 811, 905
PkrI GCNGC 7 cut(s) 439, 771, 774, 918, 1011, 1014, 1017
PleI GAGTC 3 cut(s) 19, 1104, 1111
PpsI GAGTC 3 cut(s) 19, 1104, 1111
Psp1406I AACGTT 1 cut(s) 422
Psp6I CCWGG 2 cut(s) 127, 254
PspGI CCWGG 2 cut(s) 127, 254
PspN4I GGNNCC 3 cut(s) 337, 741, 933
PspPI GGNCC 2 cut(s) 258, 958
PstI CTGCAG 1 cut(s) 774
PsuI RGATCY 2 cut(s) 478, 777
RsaI GTAC 2 cut(s) 458, 802
RsaNI GTAC 2 cut(s) 457, 801
RseI CAYNNNNRTG 2 cut(s) 717, 1002
SaqAI TTAA 3 cut(s) 498, 1062, 1104
SatI GCNGC 7 cut(s) 438, 770, 773, 917, 1010, 1013, 1016
Sau96I GGNCC 2 cut(s) 258, 958
SchI GAGTC 3 cut(s) 19, 1104, 1111
ScrFI CCNGG 3 cut(s) 129, 256, 340
SduI GDGCHC 1 cut(s) 275
SfaNI GCATC 2 cut(s) 439, 835
SfcI CTRYAG 1 cut(s) 770
SinI GGWCC 1 cut(s) 958
SmiMI CAYNNNNRTG 2 cut(s) 717, 1002
SpeI ACTAGT 1 cut(s) 626
Sse9I AATT 7 cut(s) 17, 156, 215, 693, 751, 926, 1100
SseBI AGGCCT 1 cut(s) 346
SsiI CCGC 3 cut(s) 728, 917, 1150
SspI AATATT 1 cut(s) 1066
SspMI CTAG 2 cut(s) 627, 1133
StuI AGGCCT 1 cut(s) 346
StyD4I CCNGG 3 cut(s) 127, 254, 338
StyI CCWWGG 3 cut(s) 114, 188, 1145
TaaI ACNGT 1 cut(s) 301
TaiI ACGT 3 cut(s) 62, 323, 425
TaqI TCGA 2 cut(s) 636, 1074
TasI AATT 7 cut(s) 17, 156, 215, 693, 751, 926, 1100
TatI WGTACW 1 cut(s) 456
TauI GCSGC 1 cut(s) 919
TfiI GAWTC 2 cut(s) 811, 905
Tru1I TTAA 3 cut(s) 498, 1062, 1104
Tru9I TTAA 3 cut(s) 498, 1062, 1104
TscAI CASTG 3 cut(s) 364, 667, 889
TseI GCWGC 6 cut(s) 437, 769, 772, 1009, 1012, 1015
TspDTI ATGAA 5 cut(s) 10, 417, 729, 1113, 1137
TspGWI ACGGA 1 cut(s) 818
TspRI CASTG 3 cut(s) 364, 667, 889
VpaK11BI GGWCC 1 cut(s) 958
XapI RAATTY 2 cut(s) 156, 1100
XspI CTAG 2 cut(s) 627, 1133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.