FvH4_5g29860
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000636
Physical Location & Seq
Reverse (-)
20745263 .. 20746228
966 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g29860.t1

Sequence Viewer

Length: 966 bp
ATGGCGTCTTCGTCTTCTAGGTCTAGTGGGTTGATTCGCCTGGAGGAGCTACAGTGGGGAGTTGTCAAGACATTCAATCCCACAGACGCTCAATTAGTGGGTCATTATCTGTATAATCAGACCACGTTGGGTCATGGTGGAAATGGGATGCAGGCTTTTCCCGATTTGGATATCTATGGAGAATCCGGGATGGAGCCTTGGGCTGTTTGGGATTCCTTGGAGCCGATCAGAATTCCTCACCAGGATTTCTCATATTTCTTTGCCAGAGTCAAGAAATTGAGTAGTAAAGGGAAGCGCTTGTGCCGCAGAGTTGGGTCTGGGGGAACATGGAGCGAGACCGAGCCTGGTAAGGATGTTTTTGTCGACGCTGTTCAACAAGCCTATGGGAAGCTGAGGAAGTTGCGGTACGAAAACAAAGATGAGGAATCCTTTGGCTACCAGCACCATGGTGCTTGGTTAATGGAGGAGTACACCATCAACCATCTACCGGATTTGGCTTTGTACCGACTCAAAGTCAATGGTAAAGGAGGACATCACAACCAAAGGAACAAGAGGAAGACGATTTCTGATGAGACTCCCAGCTCTTCCAAGAAGCAAATACTCGAACTGAAAAGAGATCAACAGCCCCCACAATGTGATGATCATGATTACTCTGTGGATCAAAACCTTGTGTTGTCTCCCACTGGCTTTGGCTTGGATGATGATGATGATCAGTTTACGGCTAACCTTGATCAATGGAATGAGGAACTACTACACCAGATTATCACTACAGTGCCGCAACAACAAGTAGTAGAACCTAACAGCAGTAACTGTGAGCAACTACAACAACAAGGGGAGCAGCAACTTCTGCCCTCTCCCTCTCCCTCTCTTGGTGGTGATGATTCGCAAGATACTCTCTACATACAGTCAGATGAATTTAATGCATTTGAACAAGATTTGTATCAGTATTCTATCTTGTTGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

322

Amino Acids

36.52

Weight (kDa)

4.9

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 24 - 158 2.5e-15 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 363
AciI CCGC 3 cut(s) 304, 403, 776
AclWI GGATC 1 cut(s) 666
AcsI RAATTY 2 cut(s) 231, 914
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 635
AfaI GTAC 3 cut(s) 407, 470, 503
AfeI AGCGCT 1 cut(s) 296
AfiI CCNNNNNNNGG 2 cut(s) 487, 869
AgsI TTSAA 3 cut(s) 76, 374, 929
AhdI GACNNNNNGTC 1 cut(s) 512
AjnI CCWGG 3 cut(s) 39, 240, 343
AleI CACNNNNGTG 2 cut(s) 447, 770
AluBI AGCT 3 cut(s) 49, 391, 582
AluI AGCT 3 cut(s) 49, 391, 582
Alw26I GTCTC 3 cut(s) 329, 566, 681
AlwI GGATC 1 cut(s) 666
AlwNI CAGNNNCTG 1 cut(s) 810
Aor51HI AGCGCT 1 cut(s) 296
ApeKI GCWGC 1 cut(s) 838
ApoI RAATTY 2 cut(s) 231, 914
AspLEI GCGC 1 cut(s) 297
AsuC2I CCSGG 1 cut(s) 187
AsuHPI GGTGA 2 cut(s) 230, 887
BarI GAAGNNNNNNTAC 2 cut(s) 389, 421
BbsI GAAGAC 2 cut(s) 6, 563
BbvCI CCTCAGC 1 cut(s) 392
BbvI GCAGC 1 cut(s) 850
BccI CCATC 3 cut(s) 184, 482, 489
BceAI ACGGC 1 cut(s) 735
BciT130I CCWGG 3 cut(s) 41, 242, 345
BclI TGATCA 3 cut(s) 640, 709, 730
BcnI CCSGG 1 cut(s) 187
BcoDI GTCTC 3 cut(s) 329, 566, 681
BfaI CTAG 2 cut(s) 18, 24
BfmI CTRYAG 2 cut(s) 50, 768
BfoI RGCGCY 1 cut(s) 298
BisI GCNGC 3 cut(s) 304, 776, 839
BlsI GCNGC 3 cut(s) 305, 777, 840
Bme1390I CCNGG 4 cut(s) 41, 187, 242, 345
BmeRI GACNNNNNGTC 1 cut(s) 512
BmiI GGNNCC 2 cut(s) 195, 222
BmrFI CCNGG 4 cut(s) 41, 187, 242, 345
BmsI GCATC 1 cut(s) 138
BpiI GAAGAC 2 cut(s) 6, 563
BpmI CTGGAG 1 cut(s) 62
Bpu10I CCTNAGC 1 cut(s) 392
BpuMI CCSGG 1 cut(s) 187
BsaBI GATNNNNATC 2 cut(s) 708, 939
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 329
BsaJI CCNNGG 3 cut(s) 197, 216, 445
BsaWI WCCGGW 1 cut(s) 487
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 2 cut(s) 487, 869
Bse1I ACTGG 1 cut(s) 688
Bse8I GATNNNNATC 2 cut(s) 708, 939
BseBI CCWGG 3 cut(s) 41, 242, 345
BseDI CCNNGG 3 cut(s) 197, 216, 445
BseGI GGATG 4 cut(s) 153, 195, 358, 703
BseJI GATNNNNATC 2 cut(s) 708, 939
BseLI CCNNNNNNNGG 2 cut(s) 487, 869
BseMII CTCAG 1 cut(s) 383
BseNI ACTGG 1 cut(s) 688
BseRI GAGGAG 2 cut(s) 59, 479
BseXI GCAGC 1 cut(s) 850
BseYI CCCAGC 1 cut(s) 578
BsiSI CCGG 2 cut(s) 186, 488
BslI CCNNNNNNNGG 2 cut(s) 487, 869
BsmAI GTCTC 3 cut(s) 329, 566, 681
Bso31I GGTCTC 1 cut(s) 329
Bsp143I GATC 6 cut(s) 225, 616, 640, 658, 709, 730
Bsp19I CCATGG 1 cut(s) 445
BspACI CCGC 3 cut(s) 304, 403, 776
BspCNI CTCAG 1 cut(s) 384
BspHI TCATGA 1 cut(s) 643
BspLI GGNNCC 2 cut(s) 195, 222
BspPI GGATC 1 cut(s) 666
BspQI GCTCTTC 1 cut(s) 589
BspTNI GGTCTC 1 cut(s) 329
BsrI ACTGG 1 cut(s) 688
BssECI CCNNGG 3 cut(s) 197, 216, 445
BssMI GATC 6 cut(s) 225, 616, 640, 658, 709, 730
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 3 cut(s) 197, 216, 445
Bst2UI CCWGG 3 cut(s) 41, 242, 345
Bst4CI ACNGT 4 cut(s) 54, 772, 812, 906
Bst6I CTCTTC 1 cut(s) 589
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 847
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 392
BstDSI CCRYGG 1 cut(s) 445
BstF5I GGATG 4 cut(s) 153, 195, 358, 703
BstH2I RGCGCY 1 cut(s) 298
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 6 cut(s) 228, 619, 643, 661, 712, 733
BstMAI GTCTC 3 cut(s) 329, 566, 681
BstMBI GATC 6 cut(s) 225, 616, 640, 658, 709, 730
BstMWI GCNNNNNNNGC 2 cut(s) 303, 847
BstNI CCWGG 3 cut(s) 41, 242, 345
BstSCI CCNGG 4 cut(s) 39, 185, 240, 343
BstSFI CTRYAG 2 cut(s) 50, 768
BstV1I GCAGC 1 cut(s) 850
BstV2I GAAGAC 2 cut(s) 6, 563
BstXI CCANNNNNNTGG 1 cut(s) 446
BtgI CCRYGG 1 cut(s) 445
BtsCI GGATG 4 cut(s) 153, 195, 358, 703
BtsIMutI CAGTG 3 cut(s) 59, 681, 777
Cac8I GCNNGC 1 cut(s) 153
CaiI CAGNNNCTG 1 cut(s) 810
CciI TCATGA 1 cut(s) 643
CfoI GCGC 1 cut(s) 297
CseI GACGC 2 cut(s) 95, 374
Csp6I GTAC 3 cut(s) 406, 469, 502
CspCI CAANNNNNGTGG 2 cut(s) 670, 705
CviAII CATG 4 cut(s) 134, 327, 446, 644
CviQI GTAC 3 cut(s) 406, 469, 502
DdeI CTNAG 1 cut(s) 392
DpnI GATC 6 cut(s) 227, 618, 642, 660, 711, 732
DpnII GATC 6 cut(s) 225, 616, 640, 658, 709, 730
DraIII CACNNNGTG 1 cut(s) 635
DriI GACNNNNNGTC 1 cut(s) 512
Eam1104I CTCTTC 1 cut(s) 589
Eam1105I GACNNNNNGTC 1 cut(s) 512
EarI CTCTTC 1 cut(s) 589
Eco130I CCWWGG 3 cut(s) 197, 216, 445
Eco31I GGTCTC 1 cut(s) 329
Eco32I GATATC 1 cut(s) 172
Eco47III AGCGCT 1 cut(s) 296
EcoRI GAATTC 1 cut(s) 231
EcoRII CCWGG 3 cut(s) 39, 240, 343
EcoRV GATATC 1 cut(s) 172
EcoT14I CCWWGG 3 cut(s) 197, 216, 445
EcoT22I ATGCAT 1 cut(s) 925
ErhI CCWWGG 3 cut(s) 197, 216, 445
FaeI CATG 4 cut(s) 137, 330, 449, 647
FaiI YATR 9 cut(s) 114, 135, 177, 253, 328, 384, 447, 645, 902
FatI CATG 4 cut(s) 133, 326, 445, 643
FbaI TGATCA 3 cut(s) 640, 709, 730
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 3 cut(s) 304, 776, 839
FokI GGATG 4 cut(s) 160, 202, 365, 710
Fsp4HI GCNGC 3 cut(s) 304, 776, 839
FspBI CTAG 2 cut(s) 18, 24
GlaI GCGC 1 cut(s) 296
GluI GCNGC 3 cut(s) 304, 776, 839
GsaI CCCAGC 1 cut(s) 582
GsuI CTGGAG 1 cut(s) 62
HaeII RGCGCY 1 cut(s) 298
HapII CCGG 2 cut(s) 186, 488
HgaI GACGC 2 cut(s) 95, 374
HhaI GCGC 1 cut(s) 297
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 137, 330, 449, 647
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 8 cut(s) 34, 182, 212, 267, 425, 507, 574, 881
HpaII CCGG 2 cut(s) 186, 488
HphI GGTGA 2 cut(s) 230, 887
Hpy166II GTNNAC 3 cut(s) 364, 471, 717
Hpy188I TCNGA 4 cut(s) 120, 230, 568, 910
Hpy188III TCNNGA 4 cut(s) 67, 161, 271, 644
Hpy8I GTNNAC 3 cut(s) 364, 471, 717
Hpy99I CGWCG 1 cut(s) 368
HpyCH4III ACNGT 4 cut(s) 54, 772, 812, 906
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 3 cut(s) 151, 923, 961
HpyF10VI GCNNNNNNNGC 2 cut(s) 303, 847
HpyF3I CTNAG 1 cut(s) 392
HpySE526I ACGT 1 cut(s) 125
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 137, 330, 449, 647
HspAI GCGC 1 cut(s) 295
Ksp22I TGATCA 3 cut(s) 640, 709, 730
Kzo9I GATC 6 cut(s) 225, 616, 640, 658, 709, 730
LguI GCTCTTC 1 cut(s) 589
LmnI GCTCC 5 cut(s) 46, 193, 220, 330, 835
Lsp1109I GCAGC 1 cut(s) 850
LweI GCATC 1 cut(s) 138
MaeI CTAG 2 cut(s) 18, 24
MaeII ACGT 1 cut(s) 125
MaeIII GTNAC 1 cut(s) 806
MalI GATC 6 cut(s) 227, 618, 642, 660, 711, 732
MboI GATC 6 cut(s) 225, 616, 640, 658, 709, 730
MboII GAAGA 3 cut(s) 6, 568, 576
MluCI AATT 4 cut(s) 92, 231, 275, 914
MlyI GAGTC 3 cut(s) 276, 501, 568
Mph1103I ATGCAT 1 cut(s) 925
MseI TTAA 2 cut(s) 458, 918
MslI CAYNNNNRTG 2 cut(s) 447, 770
MspI CCGG 2 cut(s) 186, 488
MspR9I CCNGG 4 cut(s) 41, 187, 242, 345
MvaI CCWGG 3 cut(s) 41, 242, 345
MwoI GCNNNNNNNGC 2 cut(s) 303, 847
NciI CCSGG 1 cut(s) 187
NcoI CCATGG 1 cut(s) 445
NdeII GATC 6 cut(s) 225, 616, 640, 658, 709, 730
NlaIII CATG 4 cut(s) 137, 330, 449, 647
NlaIV GGNNCC 2 cut(s) 195, 222
NsiI ATGCAT 1 cut(s) 925
OliI CACNNNNGTG 2 cut(s) 447, 770
PagI TCATGA 1 cut(s) 643
PciSI GCTCTTC 1 cut(s) 589
PfeI GAWTC 5 cut(s) 34, 182, 212, 425, 881
PfoI TCCNGGA 1 cut(s) 185
PkrI GCNGC 3 cut(s) 305, 777, 840
PleI GAGTC 3 cut(s) 275, 501, 568
PpsI GAGTC 3 cut(s) 275, 501, 568
Psp6I CCWGG 3 cut(s) 39, 240, 343
PspFI CCCAGC 1 cut(s) 578
PspGI CCWGG 3 cut(s) 39, 240, 343
PspN4I GGNNCC 2 cut(s) 195, 222
PstNI CAGNNNCTG 1 cut(s) 810
RsaI GTAC 3 cut(s) 407, 470, 503
RsaNI GTAC 3 cut(s) 406, 469, 502
RseI CAYNNNNRTG 2 cut(s) 447, 770
SalI GTCGAC 1 cut(s) 362
SapI GCTCTTC 1 cut(s) 589
SaqAI TTAA 2 cut(s) 458, 918
SatI GCNGC 3 cut(s) 304, 776, 839
Sau3AI GATC 6 cut(s) 225, 616, 640, 658, 709, 730
SchI GAGTC 3 cut(s) 276, 501, 568
ScrFI CCNGG 4 cut(s) 41, 187, 242, 345
SetI ASST 8 cut(s) 23, 51, 128, 393, 584, 669, 729, 799
SfaNI GCATC 1 cut(s) 138
SfcI CTRYAG 2 cut(s) 50, 768
SmiMI CAYNNNNRTG 2 cut(s) 447, 770
Sse9I AATT 4 cut(s) 92, 231, 275, 914
SsiI CCGC 3 cut(s) 304, 403, 776
SspMI CTAG 2 cut(s) 18, 24
StyD4I CCNGG 4 cut(s) 39, 185, 240, 343
StyI CCWWGG 3 cut(s) 197, 216, 445
TaaI ACNGT 4 cut(s) 54, 772, 812, 906
TaiI ACGT 1 cut(s) 128
TaqI TCGA 2 cut(s) 363, 603
TaqII GACCGA 1 cut(s) 353
TasI AATT 4 cut(s) 92, 231, 275, 914
TatI WGTACW 1 cut(s) 468
TauI GCSGC 2 cut(s) 306, 778
TfiI GAWTC 5 cut(s) 34, 182, 212, 425, 881
Tru1I TTAA 2 cut(s) 458, 918
Tru9I TTAA 2 cut(s) 458, 918
TscAI CASTG 3 cut(s) 59, 688, 777
TseI GCWGC 1 cut(s) 838
TspDTI ATGAA 1 cut(s) 927
TspRI CASTG 3 cut(s) 59, 688, 777
XapI RAATTY 2 cut(s) 231, 914
XmiI GTMKAC 1 cut(s) 363
XspI CTAG 2 cut(s) 18, 24
Zsp2I ATGCAT 1 cut(s) 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.