Rh6CG116800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000636
Physical Location & Seq
Forward (+)
13552973 .. 13553794
822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG116800.1

Sequence Viewer

Length: 537 bp
ATGGATGAGTTTACCATTAATCAAGCACCATACTTGGCTTTGTGCTTACTCAAAATTAATGATGAAGGAGGAGTAGAAAGAAAAGGGAGGAAATTTTTTGATGACAGTTATGAGAAGAATGACAGAAACAAGTCTTTCAAAAGCCAAAAACCTGAACCGAGAAAAGATCAAAACATTTTCATCTGTGAGCAACAGAAAGGCAGTGCCTTCTTTACTAGTACTAGTACACAACAATTGTCCTCTTCCTCTCATTATGAAGATGAAGATCAGGTGGTTCAGGTTCACTATGATGATCAGATGGTTCAGGTTCATCATGATAATGAGGTGGTTCTGGAGAACAATCAGCAGCTCTTCTTTAGGGATGATGATTGTATGGATGAGAATCTGATGTTCTTTCCCACCATCTTGTTTGATGATAACGATCACATGTTGAATGCTGATCAGCTTATGGATTTTGTGGCTCAATGTCAAATGAATTTAAAGGACTCTACACTGATGAAGATCAGGCGACCGCACTGCAGTGGTGGGACAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

20.84

Weight (kDa)

4.66

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 512
AcsI RAATTY 2 cut(s) 92, 475
AfaI GTAC 2 cut(s) 220, 226
AflIII ACRYGT 1 cut(s) 426
AgsI TTSAA 2 cut(s) 139, 433
AhlI ACTAGT 2 cut(s) 215, 221
AleI CACNNNNGTG 1 cut(s) 519
AluBI AGCT 2 cut(s) 349, 445
AluI AGCT 2 cut(s) 349, 445
ApeKI GCWGC 1 cut(s) 346
ApoI RAATTY 2 cut(s) 92, 475
AseI ATTAAT 2 cut(s) 18, 57
BbvI GCAGC 1 cut(s) 358
BccI CCATC 2 cut(s) 292, 410
BcgI CGANNNNNNTGC 2 cut(s) 498, 532
BclI TGATCA 2 cut(s) 292, 439
BcuI ACTAGT 2 cut(s) 215, 221
BfaI CTAG 2 cut(s) 216, 222
BfmI CTRYAG 1 cut(s) 517
BisI GCNGC 1 cut(s) 347
BlsI GCNGC 1 cut(s) 348
BmcAI AGTACT 1 cut(s) 220
BpmI CTGGAG 1 cut(s) 353
BsaBI GATNNNNATC 4 cut(s) 264, 381, 420, 500
Bse8I GATNNNNATC 4 cut(s) 264, 381, 420, 500
BseGI GGATG 3 cut(s) 10, 367, 382
BseJI GATNNNNATC 4 cut(s) 264, 381, 420, 500
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 1 cut(s) 358
Bsh1285I CGRYCG 1 cut(s) 512
BsiEI CGRYCG 1 cut(s) 512
BsmI GAATGC 1 cut(s) 439
Bsp143I GATC 6 cut(s) 166, 265, 292, 421, 439, 501
BspACI CCGC 1 cut(s) 512
BspHI TCATGA 1 cut(s) 313
BspMAI CTGCAG 1 cut(s) 521
BspQI GCTCTTC 1 cut(s) 356
BssMI GATC 6 cut(s) 166, 265, 292, 421, 439, 501
Bst4CI ACNGT 1 cut(s) 107
Bst6I CTCTTC 2 cut(s) 247, 356
BstF5I GGATG 3 cut(s) 10, 367, 382
BstKTI GATC 6 cut(s) 169, 268, 295, 424, 442, 504
BstMBI GATC 6 cut(s) 166, 265, 292, 421, 439, 501
BstMCI CGRYCG 1 cut(s) 512
BstNSI RCATGY 1 cut(s) 430
BstSFI CTRYAG 1 cut(s) 517
BstV1I GCAGC 1 cut(s) 358
BtsCI GGATG 3 cut(s) 10, 367, 382
BtsI GCAGTG 3 cut(s) 208, 514, 526
BtsIMutI CAGTG 4 cut(s) 208, 491, 514, 526
CciI TCATGA 1 cut(s) 313
Csp6I GTAC 2 cut(s) 219, 225
CviAII CATG 2 cut(s) 314, 427
CviJI RGCY 5 cut(s) 38, 144, 349, 445, 461
CviKI_1 RGCY 5 cut(s) 38, 144, 349, 445, 461
CviQI GTAC 2 cut(s) 219, 225
DpnI GATC 6 cut(s) 168, 267, 294, 423, 441, 503
DpnII GATC 6 cut(s) 166, 265, 292, 421, 439, 501
DraI TTTAAA 1 cut(s) 480
Eam1104I CTCTTC 2 cut(s) 247, 356
EarI CTCTTC 2 cut(s) 247, 356
FaeI CATG 2 cut(s) 317, 430
FaiI YATR 8 cut(s) 31, 111, 255, 288, 315, 374, 428, 449
FatI CATG 2 cut(s) 313, 426
FbaI TGATCA 2 cut(s) 292, 439
Fnu4HI GCNGC 1 cut(s) 347
FokI GGATG 3 cut(s) 17, 374, 389
Fsp4HI GCNGC 1 cut(s) 347
FspBI CTAG 2 cut(s) 216, 222
GluI GCNGC 1 cut(s) 347
GsuI CTGGAG 1 cut(s) 353
Hin1II CATG 2 cut(s) 317, 430
HinfI GANTC 2 cut(s) 382, 485
Hpy166II GTNNAC 3 cut(s) 12, 227, 283
Hpy188I TCNGA 2 cut(s) 297, 387
Hpy188III TCNNGA 2 cut(s) 314, 332
Hpy8I GTNNAC 3 cut(s) 12, 227, 283
HpyAV CCTTC 2 cut(s) 59, 217
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4V TGCA 1 cut(s) 519
Hsp92II CATG 2 cut(s) 317, 430
Ksp22I TGATCA 2 cut(s) 292, 439
Kzo9I GATC 6 cut(s) 166, 265, 292, 421, 439, 501
LguI GCTCTTC 1 cut(s) 356
LpnPI CCDG 6 cut(s) 165, 254, 263, 290, 317, 490
Lsp1109I GCAGC 1 cut(s) 358
MaeI CTAG 2 cut(s) 216, 222
MalI GATC 6 cut(s) 168, 267, 294, 423, 441, 503
MboI GATC 6 cut(s) 166, 265, 292, 421, 439, 501
MboII GAAGA 6 cut(s) 127, 234, 269, 275, 343, 511
MfeI CAATTG 1 cut(s) 233
MluCI AATT 4 cut(s) 54, 92, 233, 475
MlyI GAGTC 1 cut(s) 479
MnlI CCTC 5 cut(s) 62, 81, 250, 256, 316
MseI TTAA 3 cut(s) 18, 57, 479
MslI CAYNNNNRTG 3 cut(s) 288, 318, 519
MunI CAATTG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 439
NdeII GATC 6 cut(s) 166, 265, 292, 421, 439, 501
NlaIII CATG 2 cut(s) 317, 430
NspI RCATGY 1 cut(s) 430
OliI CACNNNNGTG 1 cut(s) 519
PagI TCATGA 1 cut(s) 313
PciI ACATGT 1 cut(s) 426
PciSI GCTCTTC 1 cut(s) 356
PctI GAATGC 1 cut(s) 439
PfeI GAWTC 1 cut(s) 382
PkrI GCNGC 1 cut(s) 348
PleI GAGTC 1 cut(s) 479
PpsI GAGTC 1 cut(s) 479
PscI ACATGT 1 cut(s) 426
PshBI ATTAAT 2 cut(s) 18, 57
PstI CTGCAG 1 cut(s) 521
RsaI GTAC 2 cut(s) 220, 226
RsaNI GTAC 2 cut(s) 219, 225
RseI CAYNNNNRTG 3 cut(s) 288, 318, 519
SapI GCTCTTC 1 cut(s) 356
SaqAI TTAA 3 cut(s) 18, 57, 479
SatI GCNGC 1 cut(s) 347
Sau3AI GATC 6 cut(s) 166, 265, 292, 421, 439, 501
ScaI AGTACT 1 cut(s) 220
SchI GAGTC 1 cut(s) 479
SetI ASST 7 cut(s) 154, 273, 282, 309, 327, 351, 447
SfcI CTRYAG 1 cut(s) 517
SmiMI CAYNNNNRTG 3 cut(s) 288, 318, 519
SpeI ACTAGT 2 cut(s) 215, 221
Sse9I AATT 4 cut(s) 54, 92, 233, 475
SsiI CCGC 1 cut(s) 512
SspMI CTAG 2 cut(s) 216, 222
TaaI ACNGT 1 cut(s) 107
TasI AATT 4 cut(s) 54, 92, 233, 475
TatI WGTACW 2 cut(s) 218, 224
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 3 cut(s) 18, 57, 479
Tru9I TTAA 3 cut(s) 18, 57, 479
TscAI CASTG 4 cut(s) 208, 498, 521, 526
TseI GCWGC 1 cut(s) 346
TspDTI ATGAA 7 cut(s) 78, 169, 270, 276, 299, 488, 512
TspRI CASTG 4 cut(s) 208, 498, 521, 526
VspI ATTAAT 2 cut(s) 18, 57
XapI RAATTY 2 cut(s) 92, 475
XceI RCATGY 1 cut(s) 430
XspI CTAG 2 cut(s) 216, 222
ZrmI AGTACT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.