Rh7CG496900
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000636
Physical Location & Seq
Reverse (-)
66873636 .. 66874796
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG496900.1

Sequence Viewer

Length: 1161 bp
ATGAGCCTAGAAGACCTTGATGTCGGTGTTGTGAAAACATTCCACCCCACTGATTCTGATTTAGTGGGAAGCTATCTCTACAACAAAATCAAATCCCCAACCCCAATTGGAGGAAAACAAACATTCCCTGAGATTGAAATATATGGCACCACAGGTTTACCACCATGGGATATATGGAGAATTTATGAGCCTTCCAAATTTCCACATCAAGATTATATCTATTTCTTCTCCCGGGTCAAGAAGTTGGGTTCCCGCTGTTCTCGCAGAATTGGCTGCGATGGGGGCACATGGAGCGAGACCGAAGCTGCTAAACCTGTCTATGCCAATGGAATTGAAGAGCCTTATGGGAAACTAAGGAAGTTTCGATACGAGAACAACAAACACAAAGGCTATGAACACCATGCTGCTTGGTTGATGGATGAGTTCACCATCAACCAAGCACCAGATCTGGCTTTGTGCCGACTCAAAGTCAATGATAAAGGAGGAGGAAGAAAAAAGAGGAAGAAGAGTTCTGATGAGACTAATGAGGATGAGAATGTGAGAAGCAAAAAGTGTTTGAAAAACCGAAAAGTTGAACCGAGAAGAGATCAAACTAGTTTCATGTGTGAGCAGCAACAAGAAGGCAGTGCCTCCTTTGCTAGTACTACTTCACAGCTAATTCTCTCTCCCTATCATCATGAAGATGATCACGTGGTTCAGGTGGTTCCGGAGAACAGTGACGATTATGACGAGCTACAGCAGATCCTCTTTAGTGATGATGATTGTATGGATGAGAATCTAATGTTCTCTCCCACTATCTTGTTTGATGATGCTCAGCTTATGGCTTCTGTTGATCAATCAATAGCTATTGAGCAACAACAACAACAAGATTCGGATTATTCACTTGCGCCGCAACAGCAATTGGAACCTGACAATAGGTGTCAAGAGGAGGACCAAATACAACAACAAGATCAGCCCTCTTCCTCTCATTCTCACGAGCAGCAGCAGCTCATCGGTGATGACGATCTGATGATTTATGGCCAACATGACTATAATATTCCACTCGATAACGACTTCTTATGGTCAGATGAATTTAATGGACTCTTTACTCATGAAGATCAGCTGGGAGCTGTGCCATGGCGGGATAGTGATGATCAGTTTCAGTATTCTGACATCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

386

Amino Acids

44.58

Weight (kDa)

4.61

Isoelectric Point (pI)

58.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 13 - 143 8.2e-17 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 20
AccB1I GGYRCC 1 cut(s) 146
AccIII TCCGGA 1 cut(s) 706
AciI CCGC 3 cut(s) 253, 890, 1120
AclWI GGATC 1 cut(s) 736
AcoI YGGCCR 1 cut(s) 1018
AcsI RAATTY 3 cut(s) 180, 197, 1070
AcvI CACGTG 1 cut(s) 691
AfaI GTAC 1 cut(s) 643
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 4 cut(s) 137, 335, 559, 575
AhdI GACNNNNNGTC 1 cut(s) 467
AhlI ACTAGT 1 cut(s) 593
AloI GAACNNNNNNTCC 2 cut(s) 493, 525
AluBI AGCT 9 cut(s) 72, 305, 655, 733, 817, 845, 988, 1102, 1109
AluI AGCT 9 cut(s) 72, 305, 655, 733, 817, 845, 988, 1102, 1109
Alw26I GTCTC 2 cut(s) 290, 512
AlwI GGATC 1 cut(s) 736
Ama87I CYCGRG 1 cut(s) 231
Aor13HI TCCGGA 1 cut(s) 706
AoxI GGCC 1 cut(s) 1018
ApeKI GCWGC 7 cut(s) 273, 305, 404, 610, 979, 982, 985
ApoI RAATTY 3 cut(s) 180, 197, 1070
Asp700I GAANNNNTTC 1 cut(s) 38
AspLEI GCGC 1 cut(s) 889
AspS9I GGNCC 1 cut(s) 931
AsuC2I CCSGG 2 cut(s) 232, 233
AsuHPI GGTGA 2 cut(s) 418, 1007
AvaI CYCGRG 1 cut(s) 231
AvaII GGWCC 1 cut(s) 931
BaeGI GKGCMC 1 cut(s) 287
BalI TGGCCA 1 cut(s) 1020
BanI GGYRCC 1 cut(s) 146
BarI GAAGNNNNNNTAC 2 cut(s) 350, 382
BauI CACGAG 1 cut(s) 974
BbrPI CACGTG 1 cut(s) 691
BbsI GAAGAC 1 cut(s) 18
BbvI GCAGC 7 cut(s) 260, 292, 391, 622, 991, 994, 997
BccI CCATC 3 cut(s) 272, 409, 437
BclI TGATCA 3 cut(s) 685, 832, 1132
BcnI CCSGG 2 cut(s) 232, 233
BcoDI GTCTC 2 cut(s) 290, 512
BcuI ACTAGT 1 cut(s) 593
BfaI CTAG 3 cut(s) 8, 594, 639
BfmI CTRYAG 1 cut(s) 734
BglII AGATCT 1 cut(s) 445
BisI GCNGC 8 cut(s) 274, 306, 405, 611, 890, 980, 983, 986
BlpI GCTNAGC 1 cut(s) 813
BlsI GCNGC 8 cut(s) 275, 307, 406, 612, 891, 981, 984, 987
BmcAI AGTACT 1 cut(s) 643
Bme1390I CCNGG 2 cut(s) 232, 233
Bme18I GGWCC 1 cut(s) 931
BmeRI GACNNNNNGTC 1 cut(s) 467
BmeT110I CYCGRG 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 931
BmiI GGNNCC 4 cut(s) 148, 250, 705, 906
BmrFI CCNGG 2 cut(s) 232, 233
BmsI GCATC 1 cut(s) 799
BpiI GAAGAC 1 cut(s) 18
Bpu1102I GCTNAGC 1 cut(s) 813
BpuMI CCSGG 2 cut(s) 232, 233
BsaAI YACGTR 1 cut(s) 691
BsaBI GATNNNNATC 2 cut(s) 774, 1002
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 3 cut(s) 164, 231, 1115
BsaWI WCCGGW 1 cut(s) 706
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse8I GATNNNNATC 2 cut(s) 774, 1002
BseAI TCCGGA 1 cut(s) 706
BseDI CCNNGG 3 cut(s) 164, 231, 1115
BseGI GGATG 3 cut(s) 424, 535, 775
BseJI GATNNNNATC 2 cut(s) 774, 1002
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 2 cut(s) 120, 827
BseRI GAGGAG 2 cut(s) 498, 941
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 7 cut(s) 260, 292, 391, 622, 991, 994, 997
BseYI CCCAGC 1 cut(s) 1102
BshFI GGCC 1 cut(s) 1020
BshNI GGYRCC 1 cut(s) 146
BsiHKCI CYCGRG 1 cut(s) 231
BsiSI CCGG 2 cut(s) 232, 707
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 2 cut(s) 290, 512
BsnI GGCC 1 cut(s) 1020
Bso31I GGTCTC 1 cut(s) 290
BsoBI CYCGRG 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 287
Bsp13I TCCGGA 1 cut(s) 706
Bsp143I GATC 9 cut(s) 445, 586, 685, 741, 832, 949, 1003, 1096, 1132
Bsp1720I GCTNAGC 1 cut(s) 813
Bsp19I CCATGG 2 cut(s) 164, 1115
BspACI CCGC 3 cut(s) 253, 890, 1120
BspANI GGCC 1 cut(s) 1020
BspCNI CTCAG 2 cut(s) 121, 826
BspEI TCCGGA 1 cut(s) 706
BspHI TCATGA 2 cut(s) 676, 1090
BspLI GGNNCC 4 cut(s) 148, 250, 705, 906
BspPI GGATC 1 cut(s) 736
BspQI GCTCTTC 1 cut(s) 330
BspT107I GGYRCC 1 cut(s) 146
BspTNI GGTCTC 1 cut(s) 290
BssECI CCNNGG 3 cut(s) 164, 231, 1115
BssMI GATC 9 cut(s) 445, 586, 685, 741, 832, 949, 1003, 1096, 1132
BssSI CACGAG 1 cut(s) 974
BssT1I CCWWGG 2 cut(s) 164, 1115
Bst2BI CACGAG 1 cut(s) 974
Bst4CI ACNGT 1 cut(s) 716
Bst6I CTCTTC 4 cut(s) 330, 500, 577, 964
BstBAI YACGTR 1 cut(s) 691
BstDEI CTNAG 3 cut(s) 129, 353, 813
BstDSI CCRYGG 2 cut(s) 164, 1115
BstF5I GGATG 3 cut(s) 424, 535, 775
BstHHI GCGC 1 cut(s) 889
BstKTI GATC 9 cut(s) 448, 589, 688, 744, 835, 952, 1006, 1099, 1135
BstMAI GTCTC 2 cut(s) 290, 512
BstMBI GATC 9 cut(s) 445, 586, 685, 741, 832, 949, 1003, 1096, 1132
BstMWI GCNNNNNNNGC 7 cut(s) 261, 270, 282, 291, 635, 895, 985
BstSCI CCNGG 2 cut(s) 230, 231
BstSFI CTRYAG 1 cut(s) 734
BstSLI GKGCMC 1 cut(s) 287
BstV1I GCAGC 7 cut(s) 260, 292, 391, 622, 991, 994, 997
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 2 cut(s) 445, 741
BstYI RGATCY 2 cut(s) 445, 741
BsuRI GGCC 1 cut(s) 1020
BtgI CCRYGG 2 cut(s) 164, 1115
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 3 cut(s) 424, 535, 775
BtsI GCAGTG 1 cut(s) 631
BtsIMutI CAGTG 3 cut(s) 48, 631, 721
CciI TCATGA 2 cut(s) 676, 1090
CfoI GCGC 1 cut(s) 889
Cfr13I GGNCC 1 cut(s) 931
Cfr9I CCCGGG 1 cut(s) 231
Csp6I GTAC 1 cut(s) 642
CviAII CATG 8 cut(s) 165, 288, 401, 601, 677, 1025, 1091, 1116
CviQI GTAC 1 cut(s) 642
DdeI CTNAG 3 cut(s) 129, 353, 813
DpnI GATC 9 cut(s) 447, 588, 687, 743, 834, 951, 1005, 1098, 1134
DpnII GATC 9 cut(s) 445, 586, 685, 741, 832, 949, 1003, 1096, 1132
DrdI GACNNNNNNGTC 1 cut(s) 20
DriI GACNNNNNGTC 1 cut(s) 467
DseDI GACNNNNNNGTC 1 cut(s) 20
EaeI YGGCCR 1 cut(s) 1018
Eam1104I CTCTTC 4 cut(s) 330, 500, 577, 964
Eam1105I GACNNNNNGTC 1 cut(s) 467
EarI CTCTTC 4 cut(s) 330, 500, 577, 964
Eco130I CCWWGG 2 cut(s) 164, 1115
Eco31I GGTCTC 1 cut(s) 290
Eco47I GGWCC 1 cut(s) 931
Eco72I CACGTG 1 cut(s) 691
Eco88I CYCGRG 1 cut(s) 231
EcoT14I CCWWGG 2 cut(s) 164, 1115
ErhI CCWWGG 2 cut(s) 164, 1115
FaeI CATG 8 cut(s) 168, 291, 404, 604, 680, 1028, 1094, 1119
FatI CATG 8 cut(s) 164, 287, 400, 600, 676, 1024, 1090, 1115
FauI CCCGC 2 cut(s) 260, 1113
FbaI TGATCA 3 cut(s) 685, 832, 1132
Fnu4HI GCNGC 8 cut(s) 274, 306, 405, 611, 890, 980, 983, 986
FokI GGATG 3 cut(s) 431, 542, 782
Fsp4HI GCNGC 8 cut(s) 274, 306, 405, 611, 890, 980, 983, 986
FspBI CTAG 3 cut(s) 8, 594, 639
GlaI GCGC 1 cut(s) 888
GluI GCNGC 8 cut(s) 274, 306, 405, 611, 890, 980, 983, 986
GsaI CCCAGC 1 cut(s) 1106
HaeIII GGCC 1 cut(s) 1020
HapII CCGG 2 cut(s) 232, 707
HhaI GCGC 1 cut(s) 889
Hin1II CATG 8 cut(s) 168, 291, 404, 604, 680, 1028, 1094, 1119
Hin6I GCGC 1 cut(s) 887
HinP1I GCGC 1 cut(s) 887
HinfI GANTC 5 cut(s) 53, 462, 775, 869, 1080
HpaII CCGG 2 cut(s) 232, 707
HphI GGTGA 2 cut(s) 418, 1007
Hpy166II GTNNAC 2 cut(s) 158, 426
Hpy188I TCNGA 6 cut(s) 58, 514, 874, 1008, 1066, 1150
Hpy188III TCNNGA 7 cut(s) 209, 238, 677, 707, 923, 974, 1091
Hpy8I GTNNAC 2 cut(s) 158, 426
HpyAV CCTTC 2 cut(s) 201, 614
HpyCH4III ACNGT 1 cut(s) 716
HpyCH4IV ACGT 1 cut(s) 690
HpyF10VI GCNNNNNNNGC 7 cut(s) 261, 270, 282, 291, 635, 895, 985
HpyF3I CTNAG 3 cut(s) 129, 353, 813
HpySE526I ACGT 1 cut(s) 690
Hsp92II CATG 8 cut(s) 168, 291, 404, 604, 680, 1028, 1094, 1119
HspAI GCGC 1 cut(s) 887
Kpn2I TCCGGA 1 cut(s) 706
Ksp22I TGATCA 3 cut(s) 685, 832, 1132
Kzo9I GATC 9 cut(s) 445, 586, 685, 741, 832, 949, 1003, 1096, 1132
LguI GCTCTTC 1 cut(s) 330
LmnI GCTCC 2 cut(s) 291, 1106
Lsp1109I GCAGC 7 cut(s) 260, 292, 391, 622, 991, 994, 997
LweI GCATC 1 cut(s) 799
MaeI CTAG 3 cut(s) 8, 594, 639
MaeII ACGT 1 cut(s) 690
MaeIII GTNAC 1 cut(s) 716
MalI GATC 9 cut(s) 447, 588, 687, 743, 834, 951, 1005, 1098, 1134
MboI GATC 9 cut(s) 445, 586, 685, 741, 832, 949, 1003, 1096, 1132
MfeI CAATTG 2 cut(s) 105, 899
MflI RGATCY 2 cut(s) 445, 741
MhlI GDGCHC 1 cut(s) 287
MlsI TGGCCA 1 cut(s) 1020
MluCI AATT 8 cut(s) 105, 180, 197, 267, 330, 657, 899, 1070
MluNI TGGCCA 1 cut(s) 1020
MlyI GAGTC 2 cut(s) 456, 1074
Mox20I TGGCCA 1 cut(s) 1020
MroI TCCGGA 1 cut(s) 706
MroXI GAANNNNTTC 1 cut(s) 38
MscI TGGCCA 1 cut(s) 1020
MseI TTAA 1 cut(s) 1074
MslI CAYNNNNRTG 1 cut(s) 681
Msp20I TGGCCA 1 cut(s) 1020
MspA1I CMGCKG 2 cut(s) 255, 1102
MspI CCGG 2 cut(s) 232, 707
MspR9I CCNGG 2 cut(s) 232, 233
MunI CAATTG 2 cut(s) 105, 899
MwoI GCNNNNNNNGC 7 cut(s) 261, 270, 282, 291, 635, 895, 985
NciI CCSGG 2 cut(s) 232, 233
NcoI CCATGG 2 cut(s) 164, 1115
NdeII GATC 9 cut(s) 445, 586, 685, 741, 832, 949, 1003, 1096, 1132
NlaIII CATG 8 cut(s) 168, 291, 404, 604, 680, 1028, 1094, 1119
NlaIV GGNNCC 4 cut(s) 148, 250, 705, 906
NmuCI GTSAC 1 cut(s) 716
PagI TCATGA 2 cut(s) 676, 1090
PciSI GCTCTTC 1 cut(s) 330
PcsI WCGNNNNNNNCGW 2 cut(s) 726, 999
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 3 cut(s) 53, 775, 869
PkrI GCNGC 8 cut(s) 275, 307, 406, 612, 891, 981, 984, 987
PleI GAGTC 2 cut(s) 456, 1074
PmaCI CACGTG 1 cut(s) 691
PmlI CACGTG 1 cut(s) 691
PpsI GAGTC 2 cut(s) 456, 1074
Ppu21I YACGTR 1 cut(s) 691
PspCI CACGTG 1 cut(s) 691
PspFI CCCAGC 1 cut(s) 1102
PspN4I GGNNCC 4 cut(s) 148, 250, 705, 906
PspPI GGNCC 1 cut(s) 931
PsuI RGATCY 2 cut(s) 445, 741
PvuII CAGCTG 1 cut(s) 1102
RsaI GTAC 1 cut(s) 643
RsaNI GTAC 1 cut(s) 642
RseI CAYNNNNRTG 1 cut(s) 681
SapI GCTCTTC 1 cut(s) 330
SaqAI TTAA 1 cut(s) 1074
SatI GCNGC 8 cut(s) 274, 306, 405, 611, 890, 980, 983, 986
Sau3AI GATC 9 cut(s) 445, 586, 685, 741, 832, 949, 1003, 1096, 1132
Sau96I GGNCC 1 cut(s) 931
ScaI AGTACT 1 cut(s) 643
SchI GAGTC 2 cut(s) 456, 1074
ScrFI CCNGG 2 cut(s) 232, 233
SduI GDGCHC 1 cut(s) 287
SfaNI GCATC 1 cut(s) 799
SfcI CTRYAG 1 cut(s) 734
SinI GGWCC 1 cut(s) 931
SmaI CCCGGG 1 cut(s) 233
SmiMI CAYNNNNRTG 1 cut(s) 681
SpeI ACTAGT 1 cut(s) 593
Sse9I AATT 8 cut(s) 105, 180, 197, 267, 330, 657, 899, 1070
SsiI CCGC 3 cut(s) 253, 890, 1120
SspI AATATT 1 cut(s) 1036
SspMI CTAG 3 cut(s) 8, 594, 639
StyD4I CCNGG 2 cut(s) 230, 231
StyI CCWWGG 2 cut(s) 164, 1115
TaaI ACNGT 1 cut(s) 716
TaiI ACGT 1 cut(s) 693
TaqI TCGA 2 cut(s) 364, 1044
TaqII GACCGA 1 cut(s) 314
TasI AATT 8 cut(s) 105, 180, 197, 267, 330, 657, 899, 1070
TatI WGTACW 1 cut(s) 641
TauI GCSGC 1 cut(s) 892
TfiI GAWTC 3 cut(s) 53, 775, 869
Tru1I TTAA 1 cut(s) 1074
Tru9I TTAA 1 cut(s) 1074
TscAI CASTG 3 cut(s) 55, 631, 721
TseFI GTSAC 1 cut(s) 716
TseI GCWGC 7 cut(s) 273, 305, 404, 610, 979, 982, 985
Tsp45I GTSAC 1 cut(s) 716
TspDTI ATGAA 5 cut(s) 408, 589, 693, 1083, 1107
TspMI CCCGGG 1 cut(s) 231
TspRI CASTG 3 cut(s) 55, 631, 721
VpaK11BI GGWCC 1 cut(s) 931
XapI RAATTY 3 cut(s) 180, 197, 1070
XcmI CCANNNNNNNNNTGG 1 cut(s) 171
XmaI CCCGGG 1 cut(s) 231
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 3 cut(s) 8, 594, 639
ZrmI AGTACT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.