Rroxscaffold_3G00223100
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000636
Physical Location & Seq
Forward (+)
6232652 .. 6233695
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00223100.1

Sequence Viewer

Length: 1044 bp
ATGGCTATGGCTTCTTCTTCAATTTCTTTTCTCATGCGCCTTGAAGACCTTGATGTCGGTGTTGTTAAGACGTTCCACCCTACTGATTCTGATTTAGTGGGAACCTATCTCTACAACAGAATCAAATCCCCAACCCCAATTGGAGGAAAACAAACATTCCCTGAGATTGAAATATATGGCACCACAGGTTTACCCCCGTGGGATATCTGGAGAATTTATGAGCCTTGCAAATTTCCACATCAAGATTATATCTATTTCTTCTCCCCGGTCAAAAAGTTGGGTTCCCGCTATTCTCGCAGAATTGGCTCCGATGGGGGCACCTGGAGCGAGACTGAATCTGCTAAACCTGTCTATGTCAGTGGAATTGAAGAGCCTTATGGGAAACTAAGGAAATTTAGATACGAAAACAACAGAAACAAAGGCTGTGAACACCATGCTGCTTGGTTGATGGATGAATTCACCATCAACCAAGCACCCGATTTGGCTTTGTGCCGGCTCAAAGTCAATGACAAAGGAGGAGGAAGAAAAAAGAGGAAGAAGAGTTCTGATGAGACTAATGAGGATGAGAATCACAGGAAGACAATGTCTTTCAAAAACCGAAAACTTGAACCGAAAAGAGTACTTCAAGTTCAAAACAACATGTGTGAGGGAAGTGCCTCATTTAGTACTACTAGCACTACACAGCAACTGCCCCCACAATGTGATGATCTTGGTTACTGTATGGATGAGAACCTAGTGTTCTCTCCAACTGGCTTATTGGTTGATGATTATGATGACATTTTGAATTGTGATCAGTTTATGGCTTCTCTTGATCAATGGTATGAGGAACAACAACAACAGTTTTCGGATTCTTCACTACTAGTGCCGCAGCAACAAGTAGAACCTAACAACAGTTGTGTGGAACAACAACAGCAACAAGATGAGCAGCAGCTCTATGGTGGTTTTGATCCGATGGTTCATGGTTATCAGGACCTTGATACTCCCTACTTACAGTCTGACGAATTTAATGGATTTGATCAAGATCAGCCTAAAGCACTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

347

Amino Acids

39.89

Weight (kDa)

4.86

Isoelectric Point (pI)

51.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 24 - 154 1.4e-16 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 53
AccB1I GGYRCC 2 cut(s) 179, 317
AciI CCGC 2 cut(s) 286, 866
AclWI GGATC 1 cut(s) 941
AcsI RAATTY 5 cut(s) 213, 230, 392, 455, 1001
AdeI CACNNNGTG 1 cut(s) 701
AfaI GTAC 2 cut(s) 621, 667
AfiI CCNNNNNNNGG 1 cut(s) 143
AflIII ACRYGT 1 cut(s) 639
AgsI TTSAA 9 cut(s) 21, 44, 170, 368, 592, 608, 626, 632, 784
AhlI ACTAGT 1 cut(s) 859
AjnI CCWGG 1 cut(s) 320
AloI GAACNNNNNNTCC 2 cut(s) 526, 558
AluBI AGCT 1 cut(s) 931
AluI AGCT 1 cut(s) 931
Alw26I GTCTC 2 cut(s) 323, 545
AlwI GGATC 1 cut(s) 941
AlwNI CAGNNNCTG 1 cut(s) 688
ApeKI GCWGC 4 cut(s) 437, 868, 925, 928
ApoI RAATTY 5 cut(s) 213, 230, 392, 455, 1001
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 970
AsuC2I CCSGG 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 451
AvaII GGWCC 1 cut(s) 970
BaeGI GKGCMC 1 cut(s) 320
BanI GGYRCC 2 cut(s) 179, 317
BbsI GAAGAC 2 cut(s) 51, 584
BbvI GCAGC 4 cut(s) 424, 880, 937, 940
BccI CCATC 4 cut(s) 305, 442, 470, 946
BciT130I CCWGG 1 cut(s) 322
BclI TGATCA 3 cut(s) 790, 811, 1015
BcnI CCSGG 1 cut(s) 266
BcoDI GTCTC 2 cut(s) 323, 545
BcuI ACTAGT 1 cut(s) 859
BfaI CTAG 3 cut(s) 672, 734, 860
BisI GCNGC 5 cut(s) 438, 866, 869, 926, 929
BlsI GCNGC 5 cut(s) 439, 867, 870, 927, 930
BmcAI AGTACT 2 cut(s) 621, 667
Bme1390I CCNGG 2 cut(s) 266, 322
Bme18I GGWCC 1 cut(s) 970
BmgT120I GGNCC 1 cut(s) 970
BmiI GGNNCC 5 cut(s) 103, 181, 283, 307, 319
BmrFI CCNGG 2 cut(s) 266, 322
BpiI GAAGAC 2 cut(s) 51, 584
BpmI CTGGAG 2 cut(s) 229, 343
BpuMI CCSGG 1 cut(s) 266
BsaBI GATNNNNATC 2 cut(s) 567, 1020
BsaJI CCNNGG 2 cut(s) 197, 264
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse118I RCCGGY 1 cut(s) 492
Bse1I ACTGG 1 cut(s) 754
Bse8I GATNNNNATC 2 cut(s) 567, 1020
BseBI CCWGG 1 cut(s) 322
BseDI CCNNGG 2 cut(s) 197, 264
BseGI GGATG 3 cut(s) 457, 568, 730
BseJI GATNNNNATC 2 cut(s) 567, 1020
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 754
BseRI GAGGAG 1 cut(s) 531
BseSI GKGCMC 1 cut(s) 320
BseXI GCAGC 4 cut(s) 424, 880, 937, 940
BshNI GGYRCC 2 cut(s) 179, 317
BsiSI CCGG 2 cut(s) 266, 493
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 2 cut(s) 323, 545
Bsp1286I GDGCHC 1 cut(s) 320
Bsp143I GATC 6 cut(s) 706, 790, 811, 946, 1015, 1021
BspACI CCGC 2 cut(s) 286, 866
BspCNI CTCAG 1 cut(s) 154
BspLI GGNNCC 5 cut(s) 103, 181, 283, 307, 319
BspPI GGATC 1 cut(s) 941
BspQI GCTCTTC 1 cut(s) 363
BspT107I GGYRCC 2 cut(s) 179, 317
BsrFI RCCGGY 1 cut(s) 492
BsrI ACTGG 1 cut(s) 754
BssAI RCCGGY 1 cut(s) 492
BssECI CCNNGG 2 cut(s) 197, 264
BssMI GATC 6 cut(s) 706, 790, 811, 946, 1015, 1021
Bst2UI CCWGG 1 cut(s) 322
Bst4CI ACNGT 5 cut(s) 719, 840, 893, 993, 1038
Bst6I CTCTTC 2 cut(s) 363, 533
BstC8I GCNNGC 1 cut(s) 494
BstDEI CTNAG 2 cut(s) 162, 386
BstDSI CCRYGG 1 cut(s) 197
BstF5I GGATG 3 cut(s) 457, 568, 730
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 6 cut(s) 709, 793, 814, 949, 1018, 1024
BstMAI GTCTC 2 cut(s) 323, 545
BstMBI GATC 6 cut(s) 706, 790, 811, 946, 1015, 1021
BstMWI GCNNNNNNNGC 3 cut(s) 294, 303, 324
BstNI CCWGG 1 cut(s) 322
BstNSI RCATGY 1 cut(s) 643
BstSCI CCNGG 2 cut(s) 264, 320
BstSLI GKGCMC 1 cut(s) 320
BstV1I GCAGC 4 cut(s) 424, 880, 937, 940
BstV2I GAAGAC 2 cut(s) 51, 584
BtgI CCRYGG 1 cut(s) 197
BtsCI GGATG 3 cut(s) 457, 568, 730
BtsIMutI CAGTG 2 cut(s) 364, 1034
Cac8I GCNNGC 1 cut(s) 494
CaiI CAGNNNCTG 1 cut(s) 688
CfoI GCGC 1 cut(s) 39
Cfr10I RCCGGY 1 cut(s) 492
Cfr13I GGNCC 1 cut(s) 970
Csp6I GTAC 2 cut(s) 620, 666
CviAII CATG 4 cut(s) 34, 434, 640, 959
CviQI GTAC 2 cut(s) 620, 666
DdeI CTNAG 2 cut(s) 162, 386
DpnI GATC 6 cut(s) 708, 792, 813, 948, 1017, 1023
DpnII GATC 6 cut(s) 706, 790, 811, 946, 1015, 1021
DraIII CACNNNGTG 1 cut(s) 701
DrdI GACNNNNNNGTC 1 cut(s) 53
DseDI GACNNNNNNGTC 1 cut(s) 53
Eam1104I CTCTTC 2 cut(s) 363, 533
EarI CTCTTC 2 cut(s) 363, 533
Eco32I GATATC 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 970
EcoO109I RGGNCCY 1 cut(s) 970
EcoRI GAATTC 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 320
EcoRV GATATC 1 cut(s) 205
FaeI CATG 4 cut(s) 37, 437, 643, 962
FatI CATG 4 cut(s) 33, 433, 639, 958
FauI CCCGC 1 cut(s) 293
FbaI TGATCA 3 cut(s) 790, 811, 1015
Fnu4HI GCNGC 5 cut(s) 438, 866, 869, 926, 929
FokI GGATG 3 cut(s) 464, 575, 737
Fsp4HI GCNGC 5 cut(s) 438, 866, 869, 926, 929
FspBI CTAG 3 cut(s) 672, 734, 860
GlaI GCGC 1 cut(s) 38
GluI GCNGC 5 cut(s) 438, 866, 869, 926, 929
GsuI CTGGAG 2 cut(s) 229, 343
HapII CCGG 2 cut(s) 266, 493
HhaI GCGC 1 cut(s) 39
Hin1II CATG 4 cut(s) 37, 437, 643, 962
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HinfI GANTC 5 cut(s) 86, 120, 335, 568, 848
HpaII CCGG 2 cut(s) 266, 493
HphI GGTGA 1 cut(s) 451
Hpy166II GTNNAC 2 cut(s) 191, 428
Hpy188I TCNGA 6 cut(s) 91, 310, 547, 847, 951, 997
Hpy188III TCNNGA 5 cut(s) 208, 242, 809, 968, 1019
Hpy8I GTNNAC 2 cut(s) 191, 428
HpyCH4III ACNGT 5 cut(s) 719, 840, 893, 993, 1038
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 1 cut(s) 228
HpyF10VI GCNNNNNNNGC 3 cut(s) 294, 303, 324
HpyF3I CTNAG 2 cut(s) 162, 386
HpySE526I ACGT 1 cut(s) 71
Hsp92II CATG 4 cut(s) 37, 437, 643, 962
HspAI GCGC 1 cut(s) 37
KroI GCCGGC 1 cut(s) 492
KroNI GCCGGC 1 cut(s) 494
Ksp22I TGATCA 3 cut(s) 790, 811, 1015
Kzo9I GATC 6 cut(s) 706, 790, 811, 946, 1015, 1021
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 2 cut(s) 311, 324
Lsp1109I GCAGC 4 cut(s) 424, 880, 937, 940
MaeI CTAG 3 cut(s) 672, 734, 860
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 713
MalI GATC 6 cut(s) 708, 792, 813, 948, 1017, 1023
MboI GATC 6 cut(s) 706, 790, 811, 946, 1015, 1021
MfeI CAATTG 1 cut(s) 138
MhlI GDGCHC 1 cut(s) 320
MmeI TCCRAC 1 cut(s) 770
MnlI CCTC 8 cut(s) 137, 509, 512, 525, 553, 640, 667, 817
MroNI GCCGGC 1 cut(s) 492
MseI TTAA 2 cut(s) 66, 1005
MspI CCGG 2 cut(s) 266, 493
MspR9I CCNGG 2 cut(s) 266, 322
MunI CAATTG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 322
MwoI GCNNNNNNNGC 3 cut(s) 294, 303, 324
NaeI GCCGGC 1 cut(s) 494
NciI CCSGG 1 cut(s) 266
NdeII GATC 6 cut(s) 706, 790, 811, 946, 1015, 1021
NgoMIV GCCGGC 1 cut(s) 492
NlaIII CATG 4 cut(s) 37, 437, 643, 962
NlaIV GGNNCC 5 cut(s) 103, 181, 283, 307, 319
NspI RCATGY 1 cut(s) 643
PciI ACATGT 1 cut(s) 639
PciSI GCTCTTC 1 cut(s) 363
PdiI GCCGGC 1 cut(s) 494
PfeI GAWTC 5 cut(s) 86, 120, 335, 568, 848
PflFI GACNNNGTC 1 cut(s) 583
PkrI GCNGC 5 cut(s) 439, 867, 870, 927, 930
PpuMI RGGWCCY 1 cut(s) 970
PscI ACATGT 1 cut(s) 639
Psp5II RGGWCCY 1 cut(s) 970
Psp6I CCWGG 1 cut(s) 320
PspGI CCWGG 1 cut(s) 320
PspN4I GGNNCC 5 cut(s) 103, 181, 283, 307, 319
PspPI GGNCC 1 cut(s) 970
PspPPI RGGWCCY 1 cut(s) 970
PsrI GAACNNNNNNTAC 2 cut(s) 612, 644
PstNI CAGNNNCTG 1 cut(s) 688
PsyI GACNNNGTC 1 cut(s) 583
RsaI GTAC 2 cut(s) 621, 667
RsaNI GTAC 2 cut(s) 620, 666
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 2 cut(s) 66, 1005
SatI GCNGC 5 cut(s) 438, 866, 869, 926, 929
Sau3AI GATC 6 cut(s) 706, 790, 811, 946, 1015, 1021
Sau96I GGNCC 1 cut(s) 970
ScaI AGTACT 2 cut(s) 621, 667
ScrFI CCNGG 2 cut(s) 266, 322
SduI GDGCHC 1 cut(s) 320
SinI GGWCC 1 cut(s) 970
SpeI ACTAGT 1 cut(s) 859
SsiI CCGC 2 cut(s) 286, 866
SspMI CTAG 3 cut(s) 672, 734, 860
StyD4I CCNGG 2 cut(s) 264, 320
TaaI ACNGT 5 cut(s) 719, 840, 893, 993, 1038
TaiI ACGT 1 cut(s) 74
TatI WGTACW 2 cut(s) 619, 665
TauI GCSGC 1 cut(s) 868
TfiI GAWTC 5 cut(s) 86, 120, 335, 568, 848
Tru1I TTAA 2 cut(s) 66, 1005
Tru9I TTAA 2 cut(s) 66, 1005
TscAI CASTG 2 cut(s) 364, 1041
TseI GCWGC 4 cut(s) 437, 868, 925, 928
TspDTI ATGAA 2 cut(s) 468, 947
TspRI CASTG 2 cut(s) 364, 1041
Tth111I GACNNNGTC 1 cut(s) 583
VpaK11BI GGWCC 1 cut(s) 970
XapI RAATTY 5 cut(s) 213, 230, 392, 455, 1001
XceI RCATGY 1 cut(s) 643
XspI CTAG 3 cut(s) 672, 734, 860
ZrmI AGTACT 2 cut(s) 621, 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.