Rmu_sc0006669.1_g000014
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006669.1
OG0000636
Physical Location & Seq
Reverse (-)
76648 .. 77787
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006669.1_g000014.1.cds

Sequence Viewer

Length: 1140 bp
atgagcttggaagagcttgatgtgggggttgtgaaaacattccaccccactgattctgattttgtgggattctatctctacaatagaatcaaatacccaacctcaattggaggaaaacaaacagtccctgagattgaaatatatggcaccacaggtttacccccgtgggatatatggagaatttacgaggcttccaaatttccacatcaatattatatctatttcttctccccggttaagaagctgggttcccgctgttttcgcataattggctgcgatgggggcacctggagcgagaccgaatctgctaaacctgtccatgtcaatggaattgaagagccttatgggaagctaaggaaatttagatacgaaaacaacagagacagaggctgtgaacaccatgctgcttggttgatggatgaattcaccatcaaccaagcacccgatttggctttgtgccggctcaaactcaatgacaaaggaggagcaagaaaaaagaggaagaagagttctgatgagactaatgaggatgagaatcacagaaagataatgtctttcaaaaaccgaaaacttgaaccgaaaagagttcaagttcaaaacaacatgtgtgagcaacaaaagggaagtgcctcatttagtactactagcactacacagcaactgcccccacaatgtgatgatcatgattactgtgtggatgagaaccctgtgttctctccgactggcttggttgatgattgtcatgattactgtgtggatgagaacctattgttctctccaactggcttgattgatgattatcatgacattttgaatagtgatcagtttatggcttctcttgatcaatggtatgaggaacaactacaacagtcttcggattcttcactactagtgccgcaacaacaagtagaacctaacatcagttgtaaggaacaacaacagcagcaagatgagcagaaattgccgccttctccctctcttgttcaccagcagcagctctgtggtggtcttgatctgatggtttatggttatcaggaccctgatgttgcactcgatactccctacttacagtctgacgaatttaatggatttgatcaagatcagcctaaagcactgtgtcagtattctgacgttttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

379

Amino Acids

43.55

Weight (kDa)

4.81

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 146, 284
AciI CCGC 3 cut(s) 253, 896, 965
AcsI RAATTY 5 cut(s) 180, 197, 359, 422, 1079
AdeI CACNNNGTG 1 cut(s) 674
AfaI GTAC 1 cut(s) 640
AflIII ACRYGT 1 cut(s) 603
AgsI TTSAA 7 cut(s) 137, 335, 559, 575, 590, 596, 814
AhlI ACTAGT 1 cut(s) 889
AjnI CCWGG 1 cut(s) 287
AloI GAACNNNNNNTCC 2 cut(s) 493, 525
AluBI AGCT 5 cut(s) 6, 16, 244, 352, 997
AluI AGCT 5 cut(s) 6, 16, 244, 352, 997
Alw26I GTCTC 3 cut(s) 290, 375, 512
AlwNI CAGNNNCTG 3 cut(s) 128, 390, 661
ApeKI GCWGC 5 cut(s) 273, 404, 943, 991, 994
ApoI RAATTY 5 cut(s) 180, 197, 359, 422, 1079
Asp700I GAANNNNTTC 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 1036
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 2 cut(s) 418, 977
AvaII GGWCC 1 cut(s) 1036
BaeGI GKGCMC 1 cut(s) 287
BanI GGYRCC 2 cut(s) 146, 284
BbsI GAAGAC 1 cut(s) 864
BbvI GCAGC 5 cut(s) 260, 391, 955, 1003, 1006
BccI CCATC 4 cut(s) 272, 409, 437, 1012
BciT130I CCWGG 1 cut(s) 289
BclI TGATCA 4 cut(s) 679, 820, 841, 1093
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 3 cut(s) 290, 375, 512
BcuI ACTAGT 1 cut(s) 889
BfaI CTAG 2 cut(s) 645, 890
BisI GCNGC 7 cut(s) 274, 405, 896, 944, 965, 992, 995
BlsI GCNGC 7 cut(s) 275, 406, 897, 945, 966, 993, 996
BmcAI AGTACT 1 cut(s) 640
Bme1390I CCNGG 2 cut(s) 233, 289
Bme18I GGWCC 1 cut(s) 1036
BmgT120I GGNCC 1 cut(s) 1036
BmiI GGNNCC 4 cut(s) 148, 250, 286, 1038
BmrFI CCNGG 2 cut(s) 233, 289
BpiI GAAGAC 1 cut(s) 864
BpmI CTGGAG 1 cut(s) 310
Bpu10I CCTNAGC 1 cut(s) 353
BpuMI CCSGG 1 cut(s) 233
BsaBI GATNNNNATC 3 cut(s) 534, 798, 1098
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 2 cut(s) 164, 231
Bse118I RCCGGY 1 cut(s) 459
Bse1I ACTGG 2 cut(s) 727, 787
Bse8I GATNNNNATC 3 cut(s) 534, 798, 1098
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 2 cut(s) 164, 231
BseGI GGATG 4 cut(s) 424, 535, 703, 763
BseJI GATNNNNATC 3 cut(s) 534, 798, 1098
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 2 cut(s) 727, 787
BseRI GAGGAG 1 cut(s) 498
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 5 cut(s) 260, 391, 955, 1003, 1006
BseYI CCCAGC 1 cut(s) 244
BshNI GGYRCC 2 cut(s) 146, 284
BsiSI CCGG 2 cut(s) 233, 460
BslFI GGGAC 1 cut(s) 110
BsmAI GTCTC 3 cut(s) 290, 375, 512
BsmFI GGGAC 1 cut(s) 110
Bso31I GGTCTC 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 6 cut(s) 679, 820, 841, 1012, 1093, 1099
BspACI CCGC 3 cut(s) 253, 896, 965
BspCNI CTCAG 1 cut(s) 121
BspHI TCATGA 3 cut(s) 682, 742, 802
BspLI GGNNCC 4 cut(s) 148, 250, 286, 1038
BspQI GCTCTTC 2 cut(s) 6, 330
BspT107I GGYRCC 2 cut(s) 146, 284
BspTNI GGTCTC 1 cut(s) 290
BsrFI RCCGGY 1 cut(s) 459
BsrI ACTGG 2 cut(s) 727, 787
BssAI RCCGGY 1 cut(s) 459
BssECI CCNNGG 2 cut(s) 164, 231
BssMI GATC 6 cut(s) 679, 820, 841, 1012, 1093, 1099
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 6 cut(s) 124, 692, 752, 870, 1071, 1116
Bst6I CTCTTC 3 cut(s) 6, 330, 500
BstAPI GCANNNNNTGC 1 cut(s) 961
BstC8I GCNNGC 1 cut(s) 461
BstDEI CTNAG 2 cut(s) 129, 353
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 4 cut(s) 424, 535, 703, 763
BstKTI GATC 6 cut(s) 682, 823, 844, 1015, 1096, 1102
BstMAI GTCTC 3 cut(s) 290, 375, 512
BstMBI GATC 6 cut(s) 679, 820, 841, 1012, 1093, 1099
BstMWI GCNNNNNNNGC 6 cut(s) 261, 270, 282, 291, 952, 961
BstNI CCWGG 1 cut(s) 289
BstNSI RCATGY 1 cut(s) 607
BstSCI CCNGG 2 cut(s) 231, 287
BstSLI GKGCMC 1 cut(s) 287
BstV1I GCAGC 5 cut(s) 260, 391, 955, 1003, 1006
BstV2I GAAGAC 1 cut(s) 864
BstXI CCANNNNNNTGG 1 cut(s) 326
BtgI CCRYGG 1 cut(s) 164
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 4 cut(s) 424, 535, 703, 763
BtsIMutI CAGTG 2 cut(s) 48, 1112
Cac8I GCNNGC 1 cut(s) 461
CaiI CAGNNNCTG 3 cut(s) 128, 390, 661
CciI TCATGA 3 cut(s) 682, 742, 802
Cfr10I RCCGGY 1 cut(s) 459
Cfr13I GGNCC 1 cut(s) 1036
Csp6I GTAC 1 cut(s) 639
CviAII CATG 6 cut(s) 320, 401, 604, 683, 743, 803
CviQI GTAC 1 cut(s) 639
DdeI CTNAG 2 cut(s) 129, 353
DpnI GATC 6 cut(s) 681, 822, 843, 1014, 1095, 1101
DpnII GATC 6 cut(s) 679, 820, 841, 1012, 1093, 1099
DraIII CACNNNGTG 1 cut(s) 674
Eam1104I CTCTTC 3 cut(s) 6, 330, 500
EarI CTCTTC 3 cut(s) 6, 330, 500
Eco31I GGTCTC 1 cut(s) 290
Eco47I GGWCC 1 cut(s) 1036
EcoO109I RGGNCCY 1 cut(s) 1036
EcoRI GAATTC 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 287
FaeI CATG 6 cut(s) 323, 404, 607, 686, 746, 806
FaqI GGGAC 1 cut(s) 110
FatI CATG 6 cut(s) 319, 400, 603, 682, 742, 802
FauI CCCGC 1 cut(s) 260
FbaI TGATCA 4 cut(s) 679, 820, 841, 1093
Fnu4HI GCNGC 7 cut(s) 274, 405, 896, 944, 965, 992, 995
FokI GGATG 4 cut(s) 431, 542, 710, 770
Fsp4HI GCNGC 7 cut(s) 274, 405, 896, 944, 965, 992, 995
FspBI CTAG 2 cut(s) 645, 890
GluI GCNGC 7 cut(s) 274, 405, 896, 944, 965, 992, 995
GsaI CCCAGC 1 cut(s) 248
GsuI CTGGAG 1 cut(s) 310
HapII CCGG 2 cut(s) 233, 460
Hin1II CATG 6 cut(s) 323, 404, 607, 686, 746, 806
HinfI GANTC 6 cut(s) 53, 69, 87, 302, 535, 878
HpaII CCGG 2 cut(s) 233, 460
HphI GGTGA 2 cut(s) 418, 977
Hpy166II GTNNAC 3 cut(s) 158, 395, 985
Hpy188I TCNGA 7 cut(s) 58, 514, 720, 877, 1017, 1075, 1129
Hpy188III TCNNGA 7 cut(s) 683, 743, 803, 839, 1010, 1034, 1097
Hpy8I GTNNAC 3 cut(s) 158, 395, 985
HpyAV CCTTC 1 cut(s) 978
HpyCH4III ACNGT 6 cut(s) 124, 692, 752, 870, 1071, 1116
HpyCH4IV ACGT 1 cut(s) 1131
HpyCH4V TGCA 1 cut(s) 1049
HpyF10VI GCNNNNNNNGC 6 cut(s) 261, 270, 282, 291, 952, 961
HpyF3I CTNAG 2 cut(s) 129, 353
HpySE526I ACGT 1 cut(s) 1131
Hsp92II CATG 6 cut(s) 323, 404, 607, 686, 746, 806
KroI GCCGGC 1 cut(s) 459
KroNI GCCGGC 1 cut(s) 461
Ksp22I TGATCA 4 cut(s) 679, 820, 841, 1093
Kzo9I GATC 6 cut(s) 679, 820, 841, 1012, 1093, 1099
LguI GCTCTTC 2 cut(s) 6, 330
LmnI GCTCC 2 cut(s) 291, 485
Lsp1109I GCAGC 5 cut(s) 260, 391, 955, 1003, 1006
MaeI CTAG 2 cut(s) 645, 890
MaeII ACGT 1 cut(s) 1131
MalI GATC 6 cut(s) 681, 822, 843, 1014, 1095, 1101
MboI GATC 6 cut(s) 679, 820, 841, 1012, 1093, 1099
MboII GAAGA 7 cut(s) 23, 217, 347, 514, 517, 864, 873
MfeI CAATTG 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 9 cut(s) 105, 180, 197, 267, 330, 359, 422, 959, 1079
MmeI TCCRAC 2 cut(s) 743, 803
MroNI GCCGGC 1 cut(s) 459
MroXI GAANNNNTTC 1 cut(s) 38
MseI TTAA 2 cut(s) 237, 1083
MslI CAYNNNNRTG 1 cut(s) 324
MspA1I CMGCKG 1 cut(s) 255
MspI CCGG 2 cut(s) 233, 460
MspR9I CCNGG 2 cut(s) 233, 289
MunI CAATTG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 289
MwoI GCNNNNNNNGC 6 cut(s) 261, 270, 282, 291, 952, 961
NaeI GCCGGC 1 cut(s) 461
NciI CCSGG 1 cut(s) 233
NdeII GATC 6 cut(s) 679, 820, 841, 1012, 1093, 1099
NgoMIV GCCGGC 1 cut(s) 459
NlaIII CATG 6 cut(s) 323, 404, 607, 686, 746, 806
NlaIV GGNNCC 4 cut(s) 148, 250, 286, 1038
NspI RCATGY 1 cut(s) 607
PagI TCATGA 3 cut(s) 682, 742, 802
PciI ACATGT 1 cut(s) 603
PciSI GCTCTTC 2 cut(s) 6, 330
PdiI GCCGGC 1 cut(s) 461
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 6 cut(s) 53, 69, 87, 302, 535, 878
PkrI GCNGC 7 cut(s) 275, 406, 897, 945, 966, 993, 996
PpuMI RGGWCCY 1 cut(s) 1036
PscI ACATGT 1 cut(s) 603
Psp5II RGGWCCY 1 cut(s) 1036
Psp6I CCWGG 1 cut(s) 287
PspFI CCCAGC 1 cut(s) 244
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 4 cut(s) 148, 250, 286, 1038
PspPI GGNCC 1 cut(s) 1036
PspPPI RGGWCCY 1 cut(s) 1036
PstNI CAGNNNCTG 3 cut(s) 128, 390, 661
RsaI GTAC 1 cut(s) 640
RsaNI GTAC 1 cut(s) 639
RseI CAYNNNNRTG 1 cut(s) 324
SapI GCTCTTC 2 cut(s) 6, 330
SaqAI TTAA 2 cut(s) 237, 1083
SatI GCNGC 7 cut(s) 274, 405, 896, 944, 965, 992, 995
Sau3AI GATC 6 cut(s) 679, 820, 841, 1012, 1093, 1099
Sau96I GGNCC 1 cut(s) 1036
ScaI AGTACT 1 cut(s) 640
ScrFI CCNGG 2 cut(s) 233, 289
SduI GDGCHC 1 cut(s) 287
SinI GGWCC 1 cut(s) 1036
SmiMI CAYNNNNRTG 1 cut(s) 324
SpeI ACTAGT 1 cut(s) 889
Sse9I AATT 9 cut(s) 105, 180, 197, 267, 330, 359, 422, 959, 1079
SsiI CCGC 3 cut(s) 253, 896, 965
SspI AATATT 1 cut(s) 212
SspMI CTAG 2 cut(s) 645, 890
StyD4I CCNGG 2 cut(s) 231, 287
TaaI ACNGT 6 cut(s) 124, 692, 752, 870, 1071, 1116
TaiI ACGT 1 cut(s) 1134
TaqI TCGA 1 cut(s) 1053
TaqII GACCGA 1 cut(s) 314
TasI AATT 9 cut(s) 105, 180, 197, 267, 330, 359, 422, 959, 1079
TatI WGTACW 1 cut(s) 638
TauI GCSGC 2 cut(s) 898, 967
TfiI GAWTC 6 cut(s) 53, 69, 87, 302, 535, 878
Tru1I TTAA 2 cut(s) 237, 1083
Tru9I TTAA 2 cut(s) 237, 1083
TscAI CASTG 2 cut(s) 55, 1119
TseI GCWGC 5 cut(s) 273, 404, 943, 991, 994
TspDTI ATGAA 1 cut(s) 435
TspRI CASTG 2 cut(s) 55, 1119
VpaK11BI GGWCC 1 cut(s) 1036
XapI RAATTY 5 cut(s) 180, 197, 359, 422, 1079
XceI RCATGY 1 cut(s) 607
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 2 cut(s) 645, 890
ZrmI AGTACT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.