Rorug07G0324600
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000636
Physical Location & Seq
Reverse (-)
33677989 .. 33679005
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0324600.1

Sequence Viewer

Length: 591 bp
ATGGATGGGGGATATTCCAAGATCAATATCATTCACTGCCAAAACTCAAGATCCATGGATTTTTCAGATCTTGGATCCAAAACACAGTCAGAAAGCAATCTAGAGATCAAGGACAAGCTCGACTACACCAGTTCCAACAAACAAGAAGACGATGAGATGCAGCATCAAGAGAGGAAGTTTGGTAATGGTAATGGCAGTCATGTGGTATTGAAAAGGAACTGCTCAGTCTCTTCTTCGTCTTCTGGGTTTCAAACTGCAGTGAAAGGAGTAATATCGTCAATGAGAAGATCTTCCTCTACAGTTTCAGAAAGGTATTCCAGGATTCATGACCAGTCTGTAACATGCGTTGACCATCATGATGGGGAAGAAGAAGGTGATTGGGGGACAACAACAAGATCTAATAGGAAGAGGCATAATGGAGGCAAGATCCTTAAAGCCTGTGAAGTATACAAAAGGACGTTCTTAAATTCCTCACCAACACAAGTACAGCAGAATAGGGTAGGAATCGGTCATTATGACAACCCCAAACAGAAGGCAAGATCCAACAGAAAAAAAAAAATCCGTAGCTATCAAAGCTCTGAAATGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

196

Amino Acids

22.16

Weight (kDa)

9.45

Isoelectric Point (pI)

64.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 447
AclWI GGATC 5 cut(s) 45, 69, 82, 421, 534
AcsI RAATTY 1 cut(s) 466
AfaI GTAC 1 cut(s) 486
AgsI TTSAA 2 cut(s) 211, 251
AjnI CCWGG 1 cut(s) 317
AluBI AGCT 3 cut(s) 118, 567, 576
AluI AGCT 3 cut(s) 118, 567, 576
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 5 cut(s) 45, 69, 82, 421, 534
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 1 cut(s) 466
Asp700I GAANNNNTTC 1 cut(s) 289
AsuHPI GGTGA 2 cut(s) 386, 465
BamHI GGATCC 1 cut(s) 74
BbsI GAAGAC 2 cut(s) 153, 231
BbvI GCAGC 1 cut(s) 172
BccI CCATC 2 cut(s) 353, 360
BciT130I CCWGG 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 1 cut(s) 101
BfmI CTRYAG 2 cut(s) 255, 297
BglII AGATCT 3 cut(s) 67, 287, 395
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
Bme1390I CCNGG 1 cut(s) 319
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 319
BmsI GCATC 2 cut(s) 147, 172
BpiI GAAGAC 2 cut(s) 153, 231
BpuEI CTTGAG 1 cut(s) 31
BsaBI GATNNNNATC 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 54
Bse1I ACTGG 2 cut(s) 129, 331
Bse8I GATNNNNATC 1 cut(s) 26
BseBI CCWGG 1 cut(s) 319
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 26
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 2 cut(s) 129, 331
BseXI GCAGC 1 cut(s) 172
BslFI GGGAC 1 cut(s) 397
BsmAI GTCTC 1 cut(s) 232
BsmFI GGGAC 1 cut(s) 397
Bsp143I GATC 9 cut(s) 21, 50, 67, 74, 105, 287, 395, 426, 539
Bsp19I CCATGG 1 cut(s) 54
BspCNI CTCAG 1 cut(s) 236
BspHI TCATGA 2 cut(s) 325, 355
BspLI GGNNCC 1 cut(s) 76
BspMAI CTGCAG 1 cut(s) 259
BspPI GGATC 5 cut(s) 45, 69, 82, 421, 534
BsrI ACTGG 2 cut(s) 129, 331
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 9 cut(s) 21, 50, 67, 74, 105, 287, 395, 426, 539
BssNAI GTATAC 1 cut(s) 448
BssT1I CCWWGG 1 cut(s) 54
Bst1107I GTATAC 1 cut(s) 448
Bst2UI CCWGG 1 cut(s) 319
Bst4CI ACNGT 2 cut(s) 87, 301
Bst6I CTCTTC 2 cut(s) 235, 401
BstDEI CTNAG 1 cut(s) 223
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 9 cut(s) 24, 53, 70, 77, 108, 290, 398, 429, 542
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 9 cut(s) 21, 50, 67, 74, 105, 287, 395, 426, 539
BstMWI GCNNNNNNNGC 1 cut(s) 573
BstNI CCWGG 1 cut(s) 319
BstNSI RCATGY 1 cut(s) 345
BstSCI CCNGG 1 cut(s) 317
BstSFI CTRYAG 2 cut(s) 255, 297
BstV1I GCAGC 1 cut(s) 172
BstV2I GAAGAC 2 cut(s) 153, 231
BstX2I RGATCY 7 cut(s) 50, 67, 74, 287, 395, 426, 539
BstXI CCANNNNNNTGG 1 cut(s) 359
BstYI RGATCY 7 cut(s) 50, 67, 74, 287, 395, 426, 539
BstZ17I GTATAC 1 cut(s) 448
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 2 cut(s) 34, 264
BtsIMutI CAGTG 2 cut(s) 34, 264
CciI TCATGA 2 cut(s) 325, 355
Csp6I GTAC 1 cut(s) 485
CviAII CATG 5 cut(s) 55, 200, 326, 342, 356
CviJI RGCY 4 cut(s) 118, 437, 567, 576
CviKI_1 RGCY 4 cut(s) 118, 437, 567, 576
CviQI GTAC 1 cut(s) 485
DdeI CTNAG 1 cut(s) 223
DpnI GATC 9 cut(s) 23, 52, 69, 76, 107, 289, 397, 428, 541
DpnII GATC 9 cut(s) 21, 50, 67, 74, 105, 287, 395, 426, 539
Eam1104I CTCTTC 2 cut(s) 235, 401
EarI CTCTTC 2 cut(s) 235, 401
Eco130I CCWWGG 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 317
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 5 cut(s) 58, 203, 329, 345, 359
FaiI YATR 8 cut(s) 56, 201, 327, 343, 357, 414, 448, 516
FaqI GGGAC 1 cut(s) 397
FatI CATG 5 cut(s) 54, 199, 325, 341, 355
FblI GTMKAC 1 cut(s) 447
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 161
FspBI CTAG 1 cut(s) 101
GluI GCNGC 1 cut(s) 161
Hin1II CATG 5 cut(s) 58, 203, 329, 345, 359
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 2 cut(s) 322, 504
HphI GGTGA 2 cut(s) 386, 465
Hpy166II GTNNAC 2 cut(s) 349, 448
Hpy188I TCNGA 4 cut(s) 67, 91, 307, 580
Hpy188III TCNNGA 5 cut(s) 48, 101, 167, 326, 356
Hpy8I GTNNAC 2 cut(s) 349, 448
HpyAV CCTTC 2 cut(s) 365, 526
HpyCH4III ACNGT 2 cut(s) 87, 301
HpyCH4IV ACGT 1 cut(s) 458
HpyCH4V TGCA 2 cut(s) 160, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 573
HpyF3I CTNAG 1 cut(s) 223
HpySE526I ACGT 1 cut(s) 458
Hsp92II CATG 5 cut(s) 58, 203, 329, 345, 359
Kzo9I GATC 9 cut(s) 21, 50, 67, 74, 105, 287, 395, 426, 539
LpnPI CCDG 6 cut(s) 142, 228, 304, 331, 344, 451
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 2 cut(s) 147, 172
MaeI CTAG 1 cut(s) 101
MaeII ACGT 1 cut(s) 458
MaeIII GTNAC 1 cut(s) 337
MalI GATC 9 cut(s) 23, 52, 69, 76, 107, 289, 397, 428, 541
MboI GATC 9 cut(s) 21, 50, 67, 74, 105, 287, 395, 426, 539
MboII GAAGA 9 cut(s) 158, 222, 225, 231, 282, 297, 377, 380, 418
MflI RGATCY 7 cut(s) 50, 67, 74, 287, 395, 426, 539
MluCI AATT 1 cut(s) 466
MmeI TCCRAC 2 cut(s) 159, 567
MnlI CCTC 5 cut(s) 165, 304, 402, 413, 481
MroXI GAANNNNTTC 1 cut(s) 289
MseI TTAA 2 cut(s) 432, 464
MslI CAYNNNNRTG 1 cut(s) 357
MspR9I CCNGG 1 cut(s) 319
MvaI CCWGG 1 cut(s) 319
MwoI GCNNNNNNNGC 1 cut(s) 573
NcoI CCATGG 1 cut(s) 54
NdeII GATC 9 cut(s) 21, 50, 67, 74, 105, 287, 395, 426, 539
NlaIII CATG 5 cut(s) 58, 203, 329, 345, 359
NlaIV GGNNCC 1 cut(s) 76
NspI RCATGY 1 cut(s) 345
PagI TCATGA 2 cut(s) 325, 355
PdmI GAANNNNTTC 1 cut(s) 289
PfeI GAWTC 2 cut(s) 322, 504
PfoI TCCNGGA 1 cut(s) 317
PkrI GCNGC 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 317
PspGI CCWGG 1 cut(s) 317
PspN4I GGNNCC 1 cut(s) 76
PstI CTGCAG 1 cut(s) 259
PsuI RGATCY 7 cut(s) 50, 67, 74, 287, 395, 426, 539
RsaI GTAC 1 cut(s) 486
RsaNI GTAC 1 cut(s) 485
RseI CAYNNNNRTG 1 cut(s) 357
SaqAI TTAA 2 cut(s) 432, 464
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 9 cut(s) 21, 50, 67, 74, 105, 287, 395, 426, 539
ScrFI CCNGG 1 cut(s) 319
SetI ASST 6 cut(s) 120, 314, 376, 461, 569, 578
SfaNI GCATC 2 cut(s) 147, 172
SfcI CTRYAG 2 cut(s) 255, 297
SmiMI CAYNNNNRTG 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 46
SmoI CTYRAG 1 cut(s) 46
Sse9I AATT 1 cut(s) 466
SspMI CTAG 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 317
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 2 cut(s) 87, 301
TaiI ACGT 1 cut(s) 461
TaqI TCGA 1 cut(s) 120
TaqII GACCGA 1 cut(s) 497
TasI AATT 1 cut(s) 466
TatI WGTACW 1 cut(s) 484
TfiI GAWTC 2 cut(s) 322, 504
Tru1I TTAA 2 cut(s) 432, 464
Tru9I TTAA 2 cut(s) 432, 464
TscAI CASTG 2 cut(s) 41, 264
TseI GCWGC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 314
TspGWI ACGGA 1 cut(s) 551
TspRI CASTG 2 cut(s) 41, 264
XapI RAATTY 1 cut(s) 466
XbaI TCTAGA 1 cut(s) 100
XceI RCATGY 1 cut(s) 345
XmiI GTMKAC 1 cut(s) 447
XmnI GAANNNNTTC 1 cut(s) 289
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.