Rroxscaffold_6G00400160
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000636
Physical Location & Seq
Forward (+)
22268089 .. 22272340
4252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00400160.1

Sequence Viewer

Length: 309 bp
ATGGGGGATTTGGAGCGAGACGAAGTCGCTAAACCTGTCTATGTTAGTGGAATTGAAGAGCCTTATGGGAAACTAAGGAAGTTTAGATACGAAAACAACAAAGACAGAGACTTTGAACACCACGCTGCTTGGTTGATAGATGAATTCACCATCAACCAAGCACCCGATTTGGCTTTGTGCCGACTCAAAGTCAATGATAAAGCAAGAGGAGGAAGAAAAAAGAGGAAGACGAGTTCTTCGAGACTAATGAGGATGAGAATCACCAGCACTCTACCGAGATGGAAGGGAGTAAAGCTCAAGTTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

102

Amino Acids

12.04

Weight (kDa)

9.94

Isoelectric Point (pI)

27.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 143
AgsI TTSAA 2 cut(s) 56, 116
AhdI GACNNNNNGTC 1 cut(s) 188
AloI GAACNNNNNNTCC 2 cut(s) 217, 249
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
Alw26I GTCTC 3 cut(s) 12, 102, 235
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 143
ArsI GACNNNNNNTTYG 4 cut(s) 95, 127, 220, 252
AsuHPI GGTGA 2 cut(s) 139, 253
BarI GAAGNNNNNNTAC 2 cut(s) 71, 103
BbsI GAAGAC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 112
BccI CCATC 2 cut(s) 158, 273
BcoDI GTCTC 3 cut(s) 12, 102, 235
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
BmeRI GACNNNNNGTC 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 233
BplI GAGNNNNNCTC 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 281
BsaBI GATNNNNATC 1 cut(s) 257
Bse8I GATNNNNATC 1 cut(s) 257
BseGI GGATG 1 cut(s) 258
BseJI GATNNNNATC 1 cut(s) 257
BseRI GAGGAG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 112
BsmAI GTCTC 3 cut(s) 12, 102, 235
BsmBI CGTCTC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 74
BstF5I GGATG 1 cut(s) 258
BstMAI GTCTC 3 cut(s) 12, 102, 235
BstV1I GCAGC 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 233
BtsCI GGATG 1 cut(s) 258
CspCI CAANNNNNGTGG 2 cut(s) 110, 145
CviJI RGCY 3 cut(s) 61, 173, 295
CviKI_1 RGCY 3 cut(s) 61, 173, 295
DdeI CTNAG 1 cut(s) 74
DriI GACNNNNNGTC 1 cut(s) 188
Eam1104I CTCTTC 1 cut(s) 51
Eam1105I GACNNNNNGTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 143
Esp3I CGTCTC 1 cut(s) 12
FaiI YATR 2 cut(s) 42, 66
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 1 cut(s) 265
Fsp4HI GCNGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 126
HinfI GANTC 2 cut(s) 183, 258
HphI GGTGA 2 cut(s) 139, 253
Hpy188III TCNNGA 1 cut(s) 240
HpyAV CCTTC 1 cut(s) 277
HpyF3I CTNAG 1 cut(s) 74
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 2 cut(s) 48, 277
Lsp1109I GCAGC 1 cut(s) 112
MboII GAAGA 4 cut(s) 68, 225, 228, 238
MluCI AATT 2 cut(s) 51, 143
MlyI GAGTC 1 cut(s) 177
MnlI CCTC 4 cut(s) 200, 203, 216, 243
PciSI GCTCTTC 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 236
PfeI GAWTC 1 cut(s) 258
PflFI GACNNNGTC 1 cut(s) 23
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
PsyI GACNNNGTC 1 cut(s) 23
SapI GCTCTTC 1 cut(s) 51
SatI GCNGC 1 cut(s) 126
SchI GAGTC 1 cut(s) 177
SetI ASST 2 cut(s) 37, 297
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 2 cut(s) 51, 143
TaqI TCGA 1 cut(s) 239
TasI AATT 2 cut(s) 51, 143
TfiI GAWTC 1 cut(s) 258
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 156
Tth111I GACNNNGTC 1 cut(s) 23
XapI RAATTY 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.