Rh5BG313000
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000636
Physical Location & Seq
Forward (+)
41525214 .. 41526191
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG313000.1

Sequence Viewer

Length: 978 bp
ATGAGCCTGGAAGAGCTTGATGTGGGGGTTGTGAAAACATTCCACCCCACTGATTCTGATTTAGTGGGAAGCTATCTCTACAACAGAATCAAATCCCCAACCCCAATCGGAGGAAAACAAACATTCCCTGAGATTGAAATATATGGCACCACAGGTTTACCCCCGTGGGATATATGGAGAATTTATGAGGCTTCCAAATTTCCACATCAAGATTATCTCTATTTCTTCTCCCCGGTCAAGAAGTTGGGTTCCCGCTGTTTTCGCAGAATTGGCTGCGATGGGGGCACCTGGAGCGAGACTGAATCTGCTAAACCTGTCCATGTCCGTGGAATTGAAGAGCCTTATGGGAAGCTAAGGAAATTTAGATACGAAAACAACAGAGACAAAGGCTGTCAACACCATGCTGCTTGGTTGATGGATGAATTCACCATCAACCAAGCACCCGATTTGGCTTTGTGCCGGCTCAAACTCAATGACAAAGGAGGAGCAAGAAAGAAGAGGAAGAAGAGTTCTGATGCGACTAATGAGGATGAGAATCACAGAAAGACAATGTCTTTCAAAAACCGAAAACTTGAACCGAAAAGAGTTCAAGTTCAAAACAACATGTGTGAGCAACAAAAGGGAAGTGCCTCATTTAGTACTACTAGCACCACACAGCAACTGCCCCCACAATGTGATGATCATGCTTACTGTATGGATGAGAACCTACTTTTCTCTCCAACCGGCTTGGTTGATGATTACGATGACATTTTGAATAGTGATCAGTTTCTGGCTTCTCTTGATCAATGGTATGAGGAACAACAACCACAGTTTTCAGAGTCTTCACTACTAGTGCCGCAACAACAAGTAGAACCTAACAACAGTTGTGAGGAACAACAACAGCAACAAGGTGAGCAGCAGCTCTGTGGTGGTTTTGATATGACGGTTTATGGTTATCATGACCTTGATATTGATCTCGATACTCTACTTACAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

325

Amino Acids

37.32

Weight (kDa)

5.13

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 13 - 143 1.8e-16 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 146, 284
AciI CCGC 2 cut(s) 253, 836
AcsI RAATTY 4 cut(s) 180, 197, 359, 422
AdeI CACNNNGTG 1 cut(s) 674
AfaI GTAC 1 cut(s) 640
AfiI CCNNNNNNNGG 1 cut(s) 110
AflIII ACRYGT 1 cut(s) 603
AgsI TTSAA 7 cut(s) 137, 335, 559, 575, 590, 596, 754
AhlI ACTAGT 1 cut(s) 829
AjnI CCWGG 2 cut(s) 6, 287
AloI GAACNNNNNNTCC 2 cut(s) 493, 525
AluBI AGCT 4 cut(s) 16, 72, 352, 901
AluI AGCT 4 cut(s) 16, 72, 352, 901
Alw26I GTCTC 2 cut(s) 290, 375
AlwNI CAGNNNCTG 2 cut(s) 661, 769
ApeKI GCWGC 4 cut(s) 273, 404, 895, 898
ApoI RAATTY 4 cut(s) 180, 197, 359, 422
Asp700I GAANNNNTTC 1 cut(s) 38
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 2 cut(s) 418, 902
BaeGI GKGCMC 1 cut(s) 287
BanI GGYRCC 2 cut(s) 146, 284
BbsI GAAGAC 1 cut(s) 813
BbvI GCAGC 4 cut(s) 260, 391, 907, 910
BccI CCATC 3 cut(s) 272, 409, 437
BciT130I CCWGG 2 cut(s) 8, 289
BclI TGATCA 3 cut(s) 679, 760, 781
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 2 cut(s) 290, 375
BcuI ACTAGT 1 cut(s) 829
BfaI CTAG 2 cut(s) 645, 830
BisI GCNGC 5 cut(s) 274, 405, 836, 896, 899
BlsI GCNGC 5 cut(s) 275, 406, 837, 897, 900
BmcAI AGTACT 1 cut(s) 640
Bme1390I CCNGG 3 cut(s) 8, 233, 289
BmiI GGNNCC 3 cut(s) 148, 250, 286
BmrFI CCNGG 3 cut(s) 8, 233, 289
BmsI GCATC 1 cut(s) 505
BpiI GAAGAC 1 cut(s) 813
BpmI CTGGAG 1 cut(s) 310
Bpu10I CCTNAGC 1 cut(s) 353
BpuMI CCSGG 1 cut(s) 233
BsaBI GATNNNNATC 2 cut(s) 534, 951
BsaJI CCNNGG 3 cut(s) 164, 231, 325
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse118I RCCGGY 2 cut(s) 459, 722
Bse8I GATNNNNATC 2 cut(s) 534, 951
BseBI CCWGG 2 cut(s) 8, 289
BseDI CCNNGG 3 cut(s) 164, 231, 325
BseGI GGATG 3 cut(s) 424, 535, 703
BseJI GATNNNNATC 2 cut(s) 534, 951
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 120
BseRI GAGGAG 1 cut(s) 498
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 4 cut(s) 260, 391, 907, 910
BshNI GGYRCC 2 cut(s) 146, 284
BsiSI CCGG 3 cut(s) 233, 460, 723
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 2 cut(s) 290, 375
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 4 cut(s) 679, 760, 781, 952
BspACI CCGC 2 cut(s) 253, 836
BspCNI CTCAG 1 cut(s) 121
BspHI TCATGA 1 cut(s) 937
BspLI GGNNCC 3 cut(s) 148, 250, 286
BspQI GCTCTTC 2 cut(s) 6, 330
BspT107I GGYRCC 2 cut(s) 146, 284
BsrFI RCCGGY 2 cut(s) 459, 722
BssAI RCCGGY 2 cut(s) 459, 722
BssECI CCNNGG 3 cut(s) 164, 231, 325
BssMI GATC 4 cut(s) 679, 760, 781, 952
Bst2UI CCWGG 2 cut(s) 8, 289
Bst4CI ACNGT 5 cut(s) 692, 810, 863, 925, 973
Bst6I CTCTTC 4 cut(s) 6, 330, 491, 500
BstC8I GCNNGC 1 cut(s) 461
BstDEI CTNAG 2 cut(s) 129, 353
BstDSI CCRYGG 2 cut(s) 164, 325
BstF5I GGATG 3 cut(s) 424, 535, 703
BstKTI GATC 4 cut(s) 682, 763, 784, 955
BstMAI GTCTC 2 cut(s) 290, 375
BstMBI GATC 4 cut(s) 679, 760, 781, 952
BstMWI GCNNNNNNNGC 4 cut(s) 261, 270, 282, 291
BstNI CCWGG 2 cut(s) 8, 289
BstNSI RCATGY 1 cut(s) 607
BstSCI CCNGG 3 cut(s) 6, 231, 287
BstSLI GKGCMC 1 cut(s) 287
BstV1I GCAGC 4 cut(s) 260, 391, 907, 910
BstV2I GAAGAC 1 cut(s) 813
BstXI CCANNNNNNTGG 1 cut(s) 326
BtgI CCRYGG 2 cut(s) 164, 325
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 3 cut(s) 424, 535, 703
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 461
CaiI CAGNNNCTG 2 cut(s) 661, 769
CciI TCATGA 1 cut(s) 937
Cfr10I RCCGGY 2 cut(s) 459, 722
Csp6I GTAC 1 cut(s) 639
CviAII CATG 5 cut(s) 320, 401, 604, 683, 938
CviQI GTAC 1 cut(s) 639
DdeI CTNAG 2 cut(s) 129, 353
DpnI GATC 4 cut(s) 681, 762, 783, 954
DpnII GATC 4 cut(s) 679, 760, 781, 952
DraIII CACNNNGTG 1 cut(s) 674
Eam1104I CTCTTC 4 cut(s) 6, 330, 491, 500
EarI CTCTTC 4 cut(s) 6, 330, 491, 500
EcoRI GAATTC 1 cut(s) 422
EcoRII CCWGG 2 cut(s) 6, 287
FaeI CATG 5 cut(s) 323, 404, 607, 686, 941
FatI CATG 5 cut(s) 319, 400, 603, 682, 937
FauI CCCGC 1 cut(s) 260
FbaI TGATCA 3 cut(s) 679, 760, 781
Fnu4HI GCNGC 5 cut(s) 274, 405, 836, 896, 899
FokI GGATG 3 cut(s) 431, 542, 710
Fsp4HI GCNGC 5 cut(s) 274, 405, 836, 896, 899
FspBI CTAG 2 cut(s) 645, 830
GluI GCNGC 5 cut(s) 274, 405, 836, 896, 899
GsuI CTGGAG 1 cut(s) 310
HapII CCGG 3 cut(s) 233, 460, 723
Hin1II CATG 5 cut(s) 323, 404, 607, 686, 941
HincII GTYRAC 1 cut(s) 395
HindII GTYRAC 1 cut(s) 395
HinfI GANTC 5 cut(s) 53, 87, 302, 535, 818
HpaII CCGG 3 cut(s) 233, 460, 723
HphI GGTGA 2 cut(s) 418, 902
Hpy166II GTNNAC 2 cut(s) 158, 395
Hpy188I TCNGA 5 cut(s) 58, 110, 514, 817, 977
Hpy188III TCNNGA 5 cut(s) 209, 238, 779, 938, 956
Hpy8I GTNNAC 2 cut(s) 158, 395
HpyCH4III ACNGT 5 cut(s) 692, 810, 863, 925, 973
HpyF10VI GCNNNNNNNGC 4 cut(s) 261, 270, 282, 291
HpyF3I CTNAG 2 cut(s) 129, 353
Hsp92II CATG 5 cut(s) 323, 404, 607, 686, 941
KroI GCCGGC 1 cut(s) 459
KroNI GCCGGC 1 cut(s) 461
Ksp22I TGATCA 3 cut(s) 679, 760, 781
Kzo9I GATC 4 cut(s) 679, 760, 781, 952
LguI GCTCTTC 2 cut(s) 6, 330
LmnI GCTCC 2 cut(s) 291, 485
Lsp1109I GCAGC 4 cut(s) 260, 391, 907, 910
LweI GCATC 1 cut(s) 505
MaeI CTAG 2 cut(s) 645, 830
MalI GATC 4 cut(s) 681, 762, 783, 954
MboI GATC 4 cut(s) 679, 760, 781, 952
MboII GAAGA 7 cut(s) 23, 217, 347, 508, 514, 517, 813
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 6 cut(s) 180, 197, 267, 330, 359, 422
MlyI GAGTC 1 cut(s) 827
MmeI TCCRAC 1 cut(s) 743
MnlI CCTC 8 cut(s) 104, 181, 476, 492, 520, 640, 787, 862
MroNI GCCGGC 1 cut(s) 459
MroXI GAANNNNTTC 1 cut(s) 38
MslI CAYNNNNRTG 1 cut(s) 324
MspA1I CMGCKG 1 cut(s) 255
MspI CCGG 3 cut(s) 233, 460, 723
MspR9I CCNGG 3 cut(s) 8, 233, 289
MvaI CCWGG 2 cut(s) 8, 289
MwoI GCNNNNNNNGC 4 cut(s) 261, 270, 282, 291
NaeI GCCGGC 1 cut(s) 461
NciI CCSGG 1 cut(s) 233
NdeII GATC 4 cut(s) 679, 760, 781, 952
NgoMIV GCCGGC 1 cut(s) 459
NlaIII CATG 5 cut(s) 323, 404, 607, 686, 941
NlaIV GGNNCC 3 cut(s) 148, 250, 286
NspI RCATGY 1 cut(s) 607
PagI TCATGA 1 cut(s) 937
PciI ACATGT 1 cut(s) 603
PciSI GCTCTTC 2 cut(s) 6, 330
PdiI GCCGGC 1 cut(s) 461
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 4 cut(s) 53, 87, 302, 535
PflFI GACNNNGTC 1 cut(s) 550
PkrI GCNGC 5 cut(s) 275, 406, 837, 897, 900
PleI GAGTC 1 cut(s) 826
PpsI GAGTC 1 cut(s) 826
PscI ACATGT 1 cut(s) 603
Psp6I CCWGG 2 cut(s) 6, 287
PspGI CCWGG 2 cut(s) 6, 287
PspN4I GGNNCC 3 cut(s) 148, 250, 286
PstNI CAGNNNCTG 2 cut(s) 661, 769
PsyI GACNNNGTC 1 cut(s) 550
RsaI GTAC 1 cut(s) 640
RsaNI GTAC 1 cut(s) 639
RseI CAYNNNNRTG 1 cut(s) 324
SapI GCTCTTC 2 cut(s) 6, 330
SatI GCNGC 5 cut(s) 274, 405, 836, 896, 899
Sau3AI GATC 4 cut(s) 679, 760, 781, 952
ScaI AGTACT 1 cut(s) 640
SchI GAGTC 1 cut(s) 827
ScrFI CCNGG 3 cut(s) 8, 233, 289
SduI GDGCHC 1 cut(s) 287
SfaNI GCATC 1 cut(s) 505
SmiMI CAYNNNNRTG 1 cut(s) 324
SpeI ACTAGT 1 cut(s) 829
Sse9I AATT 6 cut(s) 180, 197, 267, 330, 359, 422
SsiI CCGC 2 cut(s) 253, 836
SspMI CTAG 2 cut(s) 645, 830
StyD4I CCNGG 3 cut(s) 6, 231, 287
TaaI ACNGT 5 cut(s) 692, 810, 863, 925, 973
TaqI TCGA 1 cut(s) 957
TasI AATT 6 cut(s) 180, 197, 267, 330, 359, 422
TatI WGTACW 1 cut(s) 638
TauI GCSGC 1 cut(s) 838
TfiI GAWTC 4 cut(s) 53, 87, 302, 535
TscAI CASTG 1 cut(s) 55
TseI GCWGC 4 cut(s) 273, 404, 895, 898
TspDTI ATGAA 1 cut(s) 435
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 1 cut(s) 55
Tth111I GACNNNGTC 1 cut(s) 550
XapI RAATTY 4 cut(s) 180, 197, 359, 422
XceI RCATGY 1 cut(s) 607
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 2 cut(s) 645, 830
ZrmI AGTACT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.