FvH4_5g27770
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000636
Physical Location & Seq
Reverse (-)
18981015 .. 18982038
1024 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27770.t1

Sequence Viewer

Length: 933 bp
ATGGCGTCTTGTTCTTCTTCGTCTTCCAGGTCTAGTGGGTTGATTCGCCTGGAGGAGCTACAGTGGGGAGTTGTCAAGACATTCAATCCCACAGACGCTCAATTAGTGGGTCATTATCTGTATAATCAGACCACGTTGGGTCATGGTGGAAATGGGAAGCAGGCTTTTCCCGATTTGGATATCTATGGAGAATCCGGGATGGAGCCTTGGGCTGTTTGGGATTCCTTGGAGCCAATCAGAATTCCTCACCAGGATTTCTCATATTTCTTTGCCAGAGTCAAGAAATTGAGTAGTAAAGGGAAGCGCTTGTGCCGCAGAGTTGGGTCTGGGGGAACATGGAGCGAGACCGAGCCTGGTAAGGATGTTTTTGTCGACGGTGTTCAACAAGCCTATGGGAAGCTGAGGAAGTTACGGTACGAAAACAAAGATGAGGAATCCTTTGGCTACCAGCACCATGGTGCTTGGTTAATGGAGGAGTACACCATCAACCATCTACCGGATTTGGCTTTGTACCGACTCAAAGTCAATGATAAAGGAGGACATCACAACCAAAGGAACAAGAGGAAGACTATTTCTGATGAGAATCCCAGCTCTTTCAAGAAGCAAAAACTTGAATCGAAAAGAGATCAACAAGTGTGTGCTGCCTCCTTTACCACAAAACAGCAACAGCCCCCACAATGTGTTGATCATGATTACTCTATGGATCAAAACCTTGAACTACAGCAGATTATCACTACAGTGCCACAACAACAAGTAGTAGAACCTAACAGCAGTAATTGTGAGGAACTACAACAACAAGGGGAGCAGCAACTTCTGCTCTCTCCCTCTCCCTCTCTTGGTGGTGATGATTCGCAGAATACTCTCTACATACAGTCGGATGAATTTAATGCATTTGAACAAGATTTGTATCAGTATTCTATCTTGTTGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

311

Amino Acids

35.31

Weight (kDa)

5.63

Isoelectric Point (pI)

54.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 27 - 161 1.4e-15 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 372
AciI CCGC 1 cut(s) 313
AclWI GGATC 1 cut(s) 711
AcsI RAATTY 2 cut(s) 240, 881
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 680
AfaI GTAC 3 cut(s) 416, 479, 512
AfeI AGCGCT 1 cut(s) 305
AfiI CCNNNNNNNGG 2 cut(s) 496, 836
AgsI TTSAA 6 cut(s) 85, 383, 598, 614, 716, 896
AhdI GACNNNNNGTC 1 cut(s) 521
AjnI CCWGG 4 cut(s) 26, 48, 249, 352
AleI CACNNNNGTG 2 cut(s) 456, 737
AluBI AGCT 3 cut(s) 58, 400, 591
AluI AGCT 3 cut(s) 58, 400, 591
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 1 cut(s) 711
Aor51HI AGCGCT 1 cut(s) 305
ApeKI GCWGC 2 cut(s) 641, 805
ApoI RAATTY 2 cut(s) 240, 881
AspLEI GCGC 1 cut(s) 306
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 2 cut(s) 239, 854
BarI GAAGNNNNNNTAC 2 cut(s) 398, 430
BbsI GAAGAC 2 cut(s) 15, 572
BbvCI CCTCAGC 1 cut(s) 401
BbvI GCAGC 2 cut(s) 628, 817
BccI CCATC 3 cut(s) 193, 491, 498
BciT130I CCWGG 4 cut(s) 28, 50, 251, 354
BclI TGATCA 1 cut(s) 685
BcnI CCSGG 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 1 cut(s) 33
BfmI CTRYAG 3 cut(s) 59, 719, 735
BfoI RGCGCY 1 cut(s) 307
BisI GCNGC 3 cut(s) 313, 642, 806
BlsI GCNGC 3 cut(s) 314, 643, 807
Bme1390I CCNGG 5 cut(s) 28, 50, 196, 251, 354
BmeRI GACNNNNNGTC 1 cut(s) 521
BmiI GGNNCC 2 cut(s) 204, 231
BmrFI CCNGG 5 cut(s) 28, 50, 196, 251, 354
BpiI GAAGAC 2 cut(s) 15, 572
BpmI CTGGAG 1 cut(s) 71
Bpu10I CCTNAGC 1 cut(s) 401
BpuMI CCSGG 1 cut(s) 196
BsaBI GATNNNNATC 2 cut(s) 582, 906
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 338
BsaJI CCNNGG 3 cut(s) 206, 225, 454
BsaWI WCCGGW 1 cut(s) 496
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 2 cut(s) 496, 836
Bse8I GATNNNNATC 2 cut(s) 582, 906
BseBI CCWGG 4 cut(s) 28, 50, 251, 354
BseDI CCNNGG 3 cut(s) 206, 225, 454
BseGI GGATG 3 cut(s) 204, 367, 883
BseJI GATNNNNATC 2 cut(s) 582, 906
BseLI CCNNNNNNNGG 2 cut(s) 496, 836
BseMII CTCAG 1 cut(s) 392
BseRI GAGGAG 2 cut(s) 68, 488
BseXI GCAGC 2 cut(s) 628, 817
BseYI CCCAGC 1 cut(s) 587
BsiSI CCGG 2 cut(s) 195, 497
BslI CCNNNNNNNGG 2 cut(s) 496, 836
BsmAI GTCTC 1 cut(s) 338
Bso31I GGTCTC 1 cut(s) 338
Bsp143I GATC 3 cut(s) 625, 685, 703
Bsp19I CCATGG 1 cut(s) 454
BspACI CCGC 1 cut(s) 313
BspCNI CTCAG 1 cut(s) 393
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 2 cut(s) 204, 231
BspPI GGATC 1 cut(s) 711
BspTNI GGTCTC 1 cut(s) 338
BssECI CCNNGG 3 cut(s) 206, 225, 454
BssMI GATC 3 cut(s) 625, 685, 703
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 3 cut(s) 206, 225, 454
Bst2UI CCWGG 4 cut(s) 28, 50, 251, 354
Bst4CI ACNGT 5 cut(s) 63, 377, 414, 739, 873
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 814
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 401
BstDSI CCRYGG 1 cut(s) 454
BstF5I GGATG 3 cut(s) 204, 367, 883
BstH2I RGCGCY 1 cut(s) 307
BstHHI GCGC 1 cut(s) 306
BstKTI GATC 3 cut(s) 628, 688, 706
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 3 cut(s) 625, 685, 703
BstMWI GCNNNNNNNGC 2 cut(s) 312, 814
BstNI CCWGG 4 cut(s) 28, 50, 251, 354
BstSCI CCNGG 5 cut(s) 26, 48, 194, 249, 352
BstSFI CTRYAG 3 cut(s) 59, 719, 735
BstV1I GCAGC 2 cut(s) 628, 817
BstV2I GAAGAC 2 cut(s) 15, 572
BstXI CCANNNNNNTGG 1 cut(s) 455
BtgI CCRYGG 1 cut(s) 454
BtsCI GGATG 3 cut(s) 204, 367, 883
BtsIMutI CAGTG 2 cut(s) 68, 744
Cac8I GCNNGC 1 cut(s) 162
CciI TCATGA 1 cut(s) 688
CfoI GCGC 1 cut(s) 306
CseI GACGC 1 cut(s) 104
Csp6I GTAC 3 cut(s) 415, 478, 511
CviAII CATG 4 cut(s) 143, 336, 455, 689
CviQI GTAC 3 cut(s) 415, 478, 511
DdeI CTNAG 1 cut(s) 401
DpnI GATC 3 cut(s) 627, 687, 705
DpnII GATC 3 cut(s) 625, 685, 703
DraIII CACNNNGTG 1 cut(s) 680
DriI GACNNNNNGTC 1 cut(s) 521
Eam1105I GACNNNNNGTC 1 cut(s) 521
Eco130I CCWWGG 3 cut(s) 206, 225, 454
Eco31I GGTCTC 1 cut(s) 338
Eco32I GATATC 1 cut(s) 181
Eco47III AGCGCT 1 cut(s) 305
EcoRI GAATTC 1 cut(s) 240
EcoRII CCWGG 4 cut(s) 26, 48, 249, 352
EcoRV GATATC 1 cut(s) 181
EcoT14I CCWWGG 3 cut(s) 206, 225, 454
EcoT22I ATGCAT 1 cut(s) 892
ErhI CCWWGG 3 cut(s) 206, 225, 454
FaeI CATG 4 cut(s) 146, 339, 458, 692
FatI CATG 4 cut(s) 142, 335, 454, 688
FbaI TGATCA 1 cut(s) 685
FblI GTMKAC 1 cut(s) 372
Fnu4HI GCNGC 3 cut(s) 313, 642, 806
FokI GGATG 3 cut(s) 211, 374, 890
Fsp4HI GCNGC 3 cut(s) 313, 642, 806
FspBI CTAG 1 cut(s) 33
GlaI GCGC 1 cut(s) 305
GluI GCNGC 3 cut(s) 313, 642, 806
GsaI CCCAGC 1 cut(s) 591
GsuI CTGGAG 1 cut(s) 71
HaeII RGCGCY 1 cut(s) 307
HapII CCGG 2 cut(s) 195, 497
HgaI GACGC 1 cut(s) 104
HhaI GCGC 1 cut(s) 306
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 146, 339, 458, 692
Hin6I GCGC 1 cut(s) 304
HinP1I GCGC 1 cut(s) 304
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 9 cut(s) 43, 191, 221, 276, 434, 516, 583, 614, 848
HpaII CCGG 2 cut(s) 195, 497
HphI GGTGA 2 cut(s) 239, 854
Hpy166II GTNNAC 2 cut(s) 373, 480
Hpy188I TCNGA 4 cut(s) 129, 239, 577, 877
Hpy188III TCNNGA 5 cut(s) 76, 170, 280, 598, 689
Hpy8I GTNNAC 2 cut(s) 373, 480
Hpy99I CGWCG 1 cut(s) 377
HpyCH4III ACNGT 5 cut(s) 63, 377, 414, 739, 873
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 2 cut(s) 890, 928
HpyF10VI GCNNNNNNNGC 2 cut(s) 312, 814
HpyF3I CTNAG 1 cut(s) 401
HpySE526I ACGT 1 cut(s) 134
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 146, 339, 458, 692
HspAI GCGC 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 685
Kzo9I GATC 3 cut(s) 625, 685, 703
LmnI GCTCC 5 cut(s) 55, 202, 229, 339, 802
Lsp1109I GCAGC 2 cut(s) 628, 817
MaeI CTAG 1 cut(s) 33
MaeII ACGT 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 408
MalI GATC 3 cut(s) 627, 687, 705
MboI GATC 3 cut(s) 625, 685, 703
MboII GAAGA 4 cut(s) 6, 9, 15, 577
MluCI AATT 5 cut(s) 101, 240, 284, 775, 881
MlyI GAGTC 2 cut(s) 285, 510
MmeI TCCRAC 1 cut(s) 855
Mph1103I ATGCAT 1 cut(s) 892
MseI TTAA 2 cut(s) 467, 885
MslI CAYNNNNRTG 2 cut(s) 456, 737
MspI CCGG 2 cut(s) 195, 497
MspR9I CCNGG 5 cut(s) 28, 50, 196, 251, 354
MvaI CCWGG 4 cut(s) 28, 50, 251, 354
MwoI GCNNNNNNNGC 2 cut(s) 312, 814
NciI CCSGG 1 cut(s) 196
NcoI CCATGG 1 cut(s) 454
NdeII GATC 3 cut(s) 625, 685, 703
NlaIII CATG 4 cut(s) 146, 339, 458, 692
NlaIV GGNNCC 2 cut(s) 204, 231
NsiI ATGCAT 1 cut(s) 892
OliI CACNNNNGTG 2 cut(s) 456, 737
PagI TCATGA 1 cut(s) 688
PfeI GAWTC 7 cut(s) 43, 191, 221, 434, 583, 614, 848
PfoI TCCNGGA 1 cut(s) 194
PkrI GCNGC 3 cut(s) 314, 643, 807
PleI GAGTC 2 cut(s) 284, 510
PpsI GAGTC 2 cut(s) 284, 510
Psp6I CCWGG 4 cut(s) 26, 48, 249, 352
PspFI CCCAGC 1 cut(s) 587
PspGI CCWGG 4 cut(s) 26, 48, 249, 352
PspN4I GGNNCC 2 cut(s) 204, 231
RsaI GTAC 3 cut(s) 416, 479, 512
RsaNI GTAC 3 cut(s) 415, 478, 511
RseI CAYNNNNRTG 2 cut(s) 456, 737
SalI GTCGAC 1 cut(s) 371
SaqAI TTAA 2 cut(s) 467, 885
SatI GCNGC 3 cut(s) 313, 642, 806
Sau3AI GATC 3 cut(s) 625, 685, 703
SchI GAGTC 2 cut(s) 285, 510
ScrFI CCNGG 5 cut(s) 28, 50, 196, 251, 354
SetI ASST 7 cut(s) 32, 60, 137, 402, 593, 714, 766
SfcI CTRYAG 3 cut(s) 59, 719, 735
SmiMI CAYNNNNRTG 2 cut(s) 456, 737
Sse9I AATT 5 cut(s) 101, 240, 284, 775, 881
SsiI CCGC 1 cut(s) 313
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 5 cut(s) 26, 48, 194, 249, 352
StyI CCWWGG 3 cut(s) 206, 225, 454
TaaI ACNGT 5 cut(s) 63, 377, 414, 739, 873
TaiI ACGT 1 cut(s) 137
TaqI TCGA 2 cut(s) 372, 617
TaqII GACCGA 1 cut(s) 362
TasI AATT 5 cut(s) 101, 240, 284, 775, 881
TatI WGTACW 1 cut(s) 477
TauI GCSGC 1 cut(s) 315
TfiI GAWTC 7 cut(s) 43, 191, 221, 434, 583, 614, 848
Tru1I TTAA 2 cut(s) 467, 885
Tru9I TTAA 2 cut(s) 467, 885
TscAI CASTG 2 cut(s) 68, 744
TseI GCWGC 2 cut(s) 641, 805
TspDTI ATGAA 1 cut(s) 894
TspRI CASTG 2 cut(s) 68, 744
XapI RAATTY 2 cut(s) 240, 881
XmiI GTMKAC 1 cut(s) 372
XspI CTAG 1 cut(s) 33
Zsp2I ATGCAT 1 cut(s) 892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.