FvH4_5g37877
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000636
Physical Location & Seq
Forward (+)
27955820 .. 27957229
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37877.t1

Sequence Viewer

Length: 981 bp
ATGCCTCCATGGGAGATATGGAGAATCTATCAGCAATCCAGGTTTCCGCACCAGGATTTCATTTACTTCTTCTCCCCTGCTGAAAAGATGAACCCAAACAAGGCACGCCAATCTCGCAAAGTTGGCACTGATGGTTATACATGGAGCGCTACTGAGCGTGTGAAGCCAATCTATGTTGCTGGAAATGAAGAAGCGTTTGGGTCATTGAGGAAGTATCGGTTCGAGAAGAAGGAGAACAAGGATGAGAAGAAGGAGCAGGTAGCAAATCAAAGTGATGATGAGCACCATGGTGCTTGGTTAATGGATGAGTGCAACATTAACCAAGCACCGGACTTGGCTCTCTGCCGGCTCAAAGTGAATGAAAAAGGAGGAGACAGAAAGAGGAAGTCATATGCGGTTGAGAAAAGTATTGAAGAGGATCAGAGTTTGAGAAGCAAAAAAAGAAAACTTGAACCCAGAAGATCATTGTCTGAGCAACAACAAGGCACCACTTCTCAGCAAATGCCCTCTTCCTATCTTCATCAAGATGATCAAGTGGCTCAGGTGGTTCCCGAAAACAACTTTCCTGCTGAGCTTGAGCAGATTCTGATGAGTGATGATGATGATGATGAGAATCTACTTCTCTCACCAACTGCTGTATTGTGGAATGATACTCAGCTTAGGGCTTGTGGTGCTCAATCAATACCTAATGAGCAGCAACCACAGCCAGAGCAACATTCAGAATATTCAGTAGCGCCGCAACAGCAGTTGCAACCTGAGAGTAGCAGCAGTCAAGAGGAGTACGAAGTACAACTACCGCAACAAGATGAAGCCTCTTCCTCTCATTCTAATGAGCAGCAGCAGCTTCTTGCTGATAACATTATCATATCAATGATAGATTTTGATTCACTCGATGACACCTGCTTTCAGTCCATCAATGGAGTCTTTACTGATGAAGATCATCCAAGCAATCAGTCGTGGTGGCATTTGGATGGAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

327

Amino Acids

37.66

Weight (kDa)

4.67

Isoelectric Point (pI)

76.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 2 - 103 1.8e-07 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 908
Acc36I ACCTGC 2 cut(s) 247, 908
AccB1I GGYRCC 1 cut(s) 485
AciI CCGC 4 cut(s) 47, 395, 737, 797
AclWI GGATC 1 cut(s) 426
AfaI GTAC 2 cut(s) 782, 789
AfeI AGCGCT 1 cut(s) 148
AfiI CCNNNNNNNGG 2 cut(s) 100, 328
AgsI TTSAA 2 cut(s) 413, 452
AjnI CCWGG 2 cut(s) 38, 51
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
AleI CACNNNNGTG 1 cut(s) 288
AluBI AGCT 3 cut(s) 574, 658, 844
AluI AGCT 3 cut(s) 574, 658, 844
Alw21I GWGCWC 2 cut(s) 285, 676
Alw26I GTCTC 1 cut(s) 366
AlwI GGATC 1 cut(s) 426
AlwNI CAGNNNCTG 1 cut(s) 586
Aor51HI AGCGCT 1 cut(s) 148
ApeKI GCWGC 5 cut(s) 694, 765, 835, 838, 841
AspLEI GCGC 2 cut(s) 149, 736
AsuHPI GGTGA 1 cut(s) 618
BanI GGYRCC 1 cut(s) 485
BarI GAAGNNNNNNTAC 2 cut(s) 777, 809
Bbv12I GWGCWC 2 cut(s) 285, 676
BbvI GCAGC 5 cut(s) 706, 777, 847, 850, 853
BccI CCATC 3 cut(s) 125, 920, 965
BciT130I CCWGG 2 cut(s) 40, 53
BclI TGATCA 1 cut(s) 529
BcoDI GTCTC 1 cut(s) 366
BfoI RGCGCY 2 cut(s) 150, 737
BfuAI ACCTGC 2 cut(s) 247, 908
BisI GCNGC 6 cut(s) 695, 737, 766, 836, 839, 842
BlpI GCTNAGC 1 cut(s) 570
BlsI GCNGC 6 cut(s) 696, 738, 767, 837, 840, 843
Bme1390I CCNGG 2 cut(s) 40, 53
BmiI GGNNCC 2 cut(s) 487, 549
BmrFI CCNGG 2 cut(s) 40, 53
Bpu10I CCTNAGC 2 cut(s) 540, 659
Bpu1102I GCTNAGC 1 cut(s) 570
BpuEI CTTGAG 1 cut(s) 596
BsaBI GATNNNNATC 2 cut(s) 612, 936
BsaJI CCNNGG 2 cut(s) 8, 286
BsaWI WCCGGW 1 cut(s) 328
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 328
Bse118I RCCGGY 1 cut(s) 345
Bse8I GATNNNNATC 2 cut(s) 612, 936
BseBI CCWGG 2 cut(s) 40, 53
BseDI CCNNGG 2 cut(s) 8, 286
BseGI GGATG 4 cut(s) 247, 310, 940, 976
BseJI GATNNNNATC 2 cut(s) 612, 936
BseLI CCNNNNNNNGG 2 cut(s) 100, 328
BseMII CTCAG 7 cut(s) 144, 462, 509, 554, 561, 668, 747
BseRI GAGGAG 2 cut(s) 384, 791
BseXI GCAGC 5 cut(s) 706, 777, 847, 850, 853
BshNI GGYRCC 1 cut(s) 485
BsiHKAI GWGCWC 2 cut(s) 285, 676
BsiSI CCGG 2 cut(s) 329, 346
BslI CCNNNNNNNGG 2 cut(s) 100, 328
BsmAI GTCTC 1 cut(s) 366
Bsp1286I GDGCHC 2 cut(s) 285, 676
Bsp143I GATC 4 cut(s) 418, 461, 529, 937
Bsp1720I GCTNAGC 1 cut(s) 570
Bsp19I CCATGG 2 cut(s) 8, 286
BspACI CCGC 4 cut(s) 47, 395, 737, 797
BspCNI CTCAG 7 cut(s) 145, 463, 508, 553, 562, 667, 748
BspLI GGNNCC 2 cut(s) 487, 549
BspMI ACCTGC 2 cut(s) 247, 908
BspPI GGATC 1 cut(s) 426
BspT107I GGYRCC 1 cut(s) 485
BsrFI RCCGGY 1 cut(s) 345
BssAI RCCGGY 1 cut(s) 345
BssECI CCNNGG 2 cut(s) 8, 286
BssMI GATC 4 cut(s) 418, 461, 529, 937
BssT1I CCWWGG 2 cut(s) 8, 286
Bst2UI CCWGG 2 cut(s) 40, 53
Bst6I CTCTTC 3 cut(s) 408, 514, 820
BstC8I GCNNGC 2 cut(s) 106, 347
BstDEI CTNAG 8 cut(s) 153, 471, 495, 540, 570, 654, 659, 756
BstDSI CCRYGG 2 cut(s) 8, 286
BstF5I GGATG 4 cut(s) 247, 310, 940, 976
BstH2I RGCGCY 2 cut(s) 150, 737
BstHHI GCGC 2 cut(s) 149, 736
BstKTI GATC 4 cut(s) 421, 464, 532, 940
BstMAI GTCTC 1 cut(s) 366
BstMBI GATC 4 cut(s) 418, 461, 529, 937
BstMWI GCNNNNNNNGC 7 cut(s) 114, 123, 163, 671, 703, 742, 841
BstNI CCWGG 2 cut(s) 40, 53
BstSCI CCNGG 2 cut(s) 38, 51
BstV1I GCAGC 5 cut(s) 706, 777, 847, 850, 853
BtgI CCRYGG 2 cut(s) 8, 286
BtsCI GGATG 4 cut(s) 247, 310, 940, 976
BtsIMutI CAGTG 1 cut(s) 126
BveI ACCTGC 2 cut(s) 247, 908
Cac8I GCNNGC 2 cut(s) 106, 347
CaiI CAGNNNCTG 1 cut(s) 586
CfoI GCGC 2 cut(s) 149, 736
Cfr10I RCCGGY 1 cut(s) 345
Csp6I GTAC 2 cut(s) 781, 788
CviAII CATG 3 cut(s) 9, 141, 287
CviQI GTAC 2 cut(s) 781, 788
DdeI CTNAG 8 cut(s) 153, 471, 495, 540, 570, 654, 659, 756
DpnI GATC 4 cut(s) 420, 463, 531, 939
DpnII GATC 4 cut(s) 418, 461, 529, 937
Eam1104I CTCTTC 3 cut(s) 408, 514, 820
EarI CTCTTC 3 cut(s) 408, 514, 820
Eco130I CCWWGG 2 cut(s) 8, 286
Eco47III AGCGCT 1 cut(s) 148
EcoRII CCWGG 2 cut(s) 38, 51
EcoT14I CCWWGG 2 cut(s) 8, 286
ErhI CCWWGG 2 cut(s) 8, 286
FaeI CATG 3 cut(s) 12, 144, 290
FaiI YATR 9 cut(s) 10, 19, 138, 142, 174, 288, 391, 393, 866
FatI CATG 3 cut(s) 8, 140, 286
FauNDI CATATG 1 cut(s) 391
FbaI TGATCA 1 cut(s) 529
Fnu4HI GCNGC 6 cut(s) 695, 737, 766, 836, 839, 842
FokI GGATG 3 cut(s) 254, 317, 927
Fsp4HI GCNGC 6 cut(s) 695, 737, 766, 836, 839, 842
GlaI GCGC 2 cut(s) 148, 735
GluI GCNGC 6 cut(s) 695, 737, 766, 836, 839, 842
HaeII RGCGCY 2 cut(s) 150, 737
HapII CCGG 2 cut(s) 329, 346
HhaI GCGC 2 cut(s) 149, 736
Hin1II CATG 3 cut(s) 12, 144, 290
Hin6I GCGC 2 cut(s) 147, 734
HinP1I GCGC 2 cut(s) 147, 734
HinfI GANTC 5 cut(s) 24, 583, 613, 884, 921
HpaII CCGG 2 cut(s) 329, 346
HphI GGTGA 1 cut(s) 618
Hpy188I TCNGA 4 cut(s) 423, 472, 588, 721
Hpy188III TCNNGA 4 cut(s) 223, 524, 551, 773
HpyAV CCTTC 2 cut(s) 223, 244
HpyCH4V TGCA 2 cut(s) 312, 751
HpyF10VI GCNNNNNNNGC 7 cut(s) 114, 123, 163, 671, 703, 742, 841
HpyF3I CTNAG 8 cut(s) 153, 471, 495, 540, 570, 654, 659, 756
Hsp92II CATG 3 cut(s) 12, 144, 290
HspAI GCGC 2 cut(s) 147, 734
KroI GCCGGC 1 cut(s) 345
KroNI GCCGGC 1 cut(s) 347
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 4 cut(s) 418, 461, 529, 937
LmnI GCTCC 2 cut(s) 144, 253
Lsp1109I GCAGC 5 cut(s) 706, 777, 847, 850, 853
MalI GATC 4 cut(s) 420, 463, 531, 939
MboI GATC 4 cut(s) 418, 461, 529, 937
MhlI GDGCHC 2 cut(s) 285, 676
MlyI GAGTC 1 cut(s) 930
MnlI CCTC 9 cut(s) 15, 201, 362, 375, 409, 517, 769, 823, 829
MroNI GCCGGC 1 cut(s) 345
MseI TTAA 2 cut(s) 299, 318
MslI CAYNNNNRTG 5 cut(s) 288, 525, 828, 869, 969
MspI CCGG 2 cut(s) 329, 346
MspR9I CCNGG 2 cut(s) 40, 53
MvaI CCWGG 2 cut(s) 40, 53
MwoI GCNNNNNNNGC 7 cut(s) 114, 123, 163, 671, 703, 742, 841
NaeI GCCGGC 1 cut(s) 347
NcoI CCATGG 2 cut(s) 8, 286
NdeI CATATG 1 cut(s) 391
NdeII GATC 4 cut(s) 418, 461, 529, 937
NgoMIV GCCGGC 1 cut(s) 345
NlaIII CATG 3 cut(s) 12, 144, 290
NlaIV GGNNCC 2 cut(s) 487, 549
OliI CACNNNNGTG 1 cut(s) 288
PaqCI CACCTGC 1 cut(s) 908
PdiI GCCGGC 1 cut(s) 347
PfeI GAWTC 4 cut(s) 24, 583, 613, 884
PkrI GCNGC 6 cut(s) 696, 738, 767, 837, 840, 843
PleI GAGTC 1 cut(s) 929
PpsI GAGTC 1 cut(s) 929
Psp6I CCWGG 2 cut(s) 38, 51
PspGI CCWGG 2 cut(s) 38, 51
PspN4I GGNNCC 2 cut(s) 487, 549
PstNI CAGNNNCTG 1 cut(s) 586
RsaI GTAC 2 cut(s) 782, 789
RsaNI GTAC 2 cut(s) 781, 788
RseI CAYNNNNRTG 5 cut(s) 288, 525, 828, 869, 969
SaqAI TTAA 2 cut(s) 299, 318
SatI GCNGC 6 cut(s) 695, 737, 766, 836, 839, 842
Sau3AI GATC 4 cut(s) 418, 461, 529, 937
SchI GAGTC 1 cut(s) 930
ScrFI CCNGG 2 cut(s) 40, 53
SduI GDGCHC 2 cut(s) 285, 676
SetI ASST 9 cut(s) 44, 261, 546, 576, 660, 688, 757, 846, 902
SmiMI CAYNNNNRTG 5 cut(s) 288, 525, 828, 869, 969
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
SsiI CCGC 4 cut(s) 47, 395, 737, 797
SspI AATATT 1 cut(s) 725
StyD4I CCNGG 2 cut(s) 38, 51
StyI CCWWGG 2 cut(s) 8, 286
TaqI TCGA 2 cut(s) 222, 891
TatI WGTACW 1 cut(s) 787
TauI GCSGC 1 cut(s) 739
TfiI GAWTC 4 cut(s) 24, 583, 613, 884
Tru1I TTAA 2 cut(s) 299, 318
Tru9I TTAA 2 cut(s) 299, 318
TscAI CASTG 1 cut(s) 133
TseI GCWGC 5 cut(s) 694, 765, 835, 838, 841
TspDTI ATGAA 7 cut(s) 49, 104, 201, 375, 509, 822, 948
TspRI CASTG 1 cut(s) 133
XcmI CCANNNNNNNNNTGG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.