Rmu_sc0004132.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004132.1
OG0000636
Physical Location & Seq
Forward (+)
38 .. 799
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004132.1_g000001.1.cds

Sequence Viewer

Length: 762 bp
atgctcctatcagatgagttcaccatcaaccaagcaccagatctagctttgtgccgactcaaagtcaatgataaaggaggaggaagaaaaaagaggaagaagagttctgatgagactaatgaggatcagaatttgagaagtaaaaagtgtttgaaaaaccgaaaagttgaaccaagaagagatcaaactagtttcttggatcctgaggagcaacaagaaggcagtgcttcctttgctacaactacttcacagctaattctctctccctatcatcatgaagatgatcaagcggttcaggtggttccggagaacaattacgattatgacgaactgcagcagatcctttttagtgatgatgattgtatggatgagaatctaatgttctctcccactatcttgtttgatgatgctcagcttatggcttttgttgatcaatcaatagctagtgagcaacaacaacaagaagattcggattattcacttgcgctgcaacaacaattggaacctgacaataggtgtcaagaggaggaccaaatacaacaacaacaagatcagccctcttcctctcattctcatgagcagcagcagctcatcggtgatgacgatatgatgatttatggccaacatgactataataatccactcgataacgacttcttatggtcagatgaacttaatggactcttgactcatgatgatcaactgggagctgtgccatggcgggatagttatgatcagtttcagtattctgacatcttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

29.31

Weight (kDa)

4.14

Isoelectric Point (pI)

59.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 304
AciI CCGC 2 cut(s) 290, 721
AclWI GGATC 4 cut(s) 132, 194, 207, 334
AcoI YGGCCR 1 cut(s) 619
AcsI RAATTY 1 cut(s) 130
AgsI TTSAA 2 cut(s) 154, 170
AhdI GACNNNNNGTC 1 cut(s) 62
AhlI ACTAGT 1 cut(s) 188
AloI GAACNNNNNNTCC 2 cut(s) 88, 120
AluBI AGCT 6 cut(s) 47, 253, 415, 443, 589, 710
AluI AGCT 6 cut(s) 47, 253, 415, 443, 589, 710
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 4 cut(s) 132, 194, 207, 334
Aor13HI TCCGGA 1 cut(s) 304
AoxI GGCC 1 cut(s) 619
ApeKI GCWGC 5 cut(s) 334, 487, 580, 583, 586
ApoI RAATTY 1 cut(s) 130
AspLEI GCGC 1 cut(s) 487
AspS9I GGNCC 1 cut(s) 529
AsuHPI GGTGA 2 cut(s) 13, 608
AvaII GGWCC 1 cut(s) 529
AxyI CCTNAGG 1 cut(s) 204
BalI TGGCCA 1 cut(s) 621
BamHI GGATCC 1 cut(s) 199
BbvI GCAGC 5 cut(s) 346, 474, 592, 595, 598
BccI CCATC 1 cut(s) 32
BclI TGATCA 4 cut(s) 283, 430, 697, 733
BcoDI GTCTC 1 cut(s) 107
BcuI ACTAGT 1 cut(s) 188
BfaI CTAG 3 cut(s) 44, 189, 444
BfmI CTRYAG 1 cut(s) 332
BglII AGATCT 1 cut(s) 40
BisI GCNGC 5 cut(s) 335, 488, 581, 584, 587
BlpI GCTNAGC 1 cut(s) 411
BlsI GCNGC 5 cut(s) 336, 489, 582, 585, 588
Bme18I GGWCC 1 cut(s) 529
BmeRI GACNNNNNGTC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 529
BmiI GGNNCC 3 cut(s) 201, 303, 504
BmrI ACTGGG 1 cut(s) 713
BmsI GCATC 1 cut(s) 397
BmuI ACTGGG 1 cut(s) 713
Bpu1102I GCTNAGC 1 cut(s) 411
BsaBI GATNNNNATC 1 cut(s) 372
BsaJI CCNNGG 1 cut(s) 716
BsaWI WCCGGW 1 cut(s) 304
Bse1I ACTGG 1 cut(s) 708
Bse21I CCTNAGG 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 372
BseAI TCCGGA 1 cut(s) 304
BseDI CCNNGG 1 cut(s) 716
BseGI GGATG 1 cut(s) 373
BseJI GATNNNNATC 1 cut(s) 372
BseMII CTCAG 2 cut(s) 195, 425
BseNI ACTGG 1 cut(s) 708
BseRI GAGGAG 3 cut(s) 93, 221, 539
BseXI GCAGC 5 cut(s) 346, 474, 592, 595, 598
BshFI GGCC 1 cut(s) 621
BsiSI CCGG 1 cut(s) 305
BsmAI GTCTC 1 cut(s) 107
BsnI GGCC 1 cut(s) 621
Bsp13I TCCGGA 1 cut(s) 304
Bsp1720I GCTNAGC 1 cut(s) 411
Bsp19I CCATGG 1 cut(s) 716
BspACI CCGC 2 cut(s) 290, 721
BspANI GGCC 1 cut(s) 621
BspCNI CTCAG 2 cut(s) 196, 424
BspEI TCCGGA 1 cut(s) 304
BspHI TCATGA 3 cut(s) 274, 574, 691
BspLI GGNNCC 3 cut(s) 201, 303, 504
BspMAI CTGCAG 1 cut(s) 336
BspPI GGATC 4 cut(s) 132, 194, 207, 334
BsrI ACTGG 1 cut(s) 708
BssECI CCNNGG 1 cut(s) 716
BssT1I CCWWGG 1 cut(s) 716
Bst6I CTCTTC 3 cut(s) 95, 172, 565
BstDEI CTNAG 2 cut(s) 204, 411
BstDSI CCRYGG 1 cut(s) 716
BstF5I GGATG 1 cut(s) 373
BstHHI GCGC 1 cut(s) 487
BstMAI GTCTC 1 cut(s) 107
BstMWI GCNNNNNNNGC 2 cut(s) 233, 586
BstSFI CTRYAG 1 cut(s) 332
BstV1I GCAGC 5 cut(s) 346, 474, 592, 595, 598
BstX2I RGATCY 3 cut(s) 40, 199, 339
BstYI RGATCY 3 cut(s) 40, 199, 339
Bsu36I CCTNAGG 1 cut(s) 204
BsuRI GGCC 1 cut(s) 621
BtgI CCRYGG 1 cut(s) 716
BtsCI GGATG 1 cut(s) 373
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 229
CciI TCATGA 3 cut(s) 274, 574, 691
CfoI GCGC 1 cut(s) 487
Cfr13I GGNCC 1 cut(s) 529
CviAII CATG 5 cut(s) 275, 575, 626, 692, 717
CviJI RGCY 9 cut(s) 47, 253, 415, 422, 443, 556, 589, 621, 710
CviKI_1 RGCY 9 cut(s) 47, 253, 415, 422, 443, 556, 589, 621, 710
DdeI CTNAG 2 cut(s) 204, 411
DriI GACNNNNNGTC 1 cut(s) 62
EaeI YGGCCR 1 cut(s) 619
Eam1104I CTCTTC 3 cut(s) 95, 172, 565
Eam1105I GACNNNNNGTC 1 cut(s) 62
EarI CTCTTC 3 cut(s) 95, 172, 565
Eco130I CCWWGG 1 cut(s) 716
Eco47I GGWCC 1 cut(s) 529
Eco81I CCTNAGG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 716
ErhI CCWWGG 1 cut(s) 716
FaeI CATG 5 cut(s) 278, 578, 629, 695, 720
FatI CATG 5 cut(s) 274, 574, 625, 691, 716
FauI CCCGC 1 cut(s) 714
FbaI TGATCA 4 cut(s) 283, 430, 697, 733
Fnu4HI GCNGC 5 cut(s) 335, 488, 581, 584, 587
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 5 cut(s) 335, 488, 581, 584, 587
FspBI CTAG 3 cut(s) 44, 189, 444
GlaI GCGC 1 cut(s) 486
GluI GCNGC 5 cut(s) 335, 488, 581, 584, 587
HaeIII GGCC 1 cut(s) 621
HapII CCGG 1 cut(s) 305
HhaI GCGC 1 cut(s) 487
Hin1II CATG 5 cut(s) 278, 578, 629, 695, 720
Hin6I GCGC 1 cut(s) 485
HinP1I GCGC 1 cut(s) 485
HinfI GANTC 5 cut(s) 57, 373, 467, 681, 688
HpaII CCGG 1 cut(s) 305
HphI GGTGA 2 cut(s) 13, 608
Hpy166II GTNNAC 1 cut(s) 21
Hpy188I TCNGA 6 cut(s) 13, 109, 129, 472, 667, 751
Hpy188III TCNNGA 7 cut(s) 203, 275, 305, 521, 575, 685, 692
Hpy8I GTNNAC 1 cut(s) 21
HpyAV CCTTC 1 cut(s) 212
HpyCH4V TGCA 2 cut(s) 334, 490
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 586
HpyF3I CTNAG 2 cut(s) 204, 411
Hsp92II CATG 5 cut(s) 278, 578, 629, 695, 720
HspAI GCGC 1 cut(s) 485
Kpn2I TCCGGA 1 cut(s) 304
Ksp22I TGATCA 4 cut(s) 283, 430, 697, 733
LmnI GCTCC 3 cut(s) 9, 208, 707
LpnPI CCDG 6 cut(s) 51, 216, 281, 318, 519, 689
Lsp1109I GCAGC 5 cut(s) 346, 474, 592, 595, 598
LweI GCATC 1 cut(s) 397
MaeI CTAG 3 cut(s) 44, 189, 444
MboII GAAGA 7 cut(s) 96, 109, 112, 189, 290, 476, 552
MfeI CAATTG 1 cut(s) 497
MflI RGATCY 3 cut(s) 40, 199, 339
MlsI TGGCCA 1 cut(s) 621
MluCI AATT 4 cut(s) 130, 255, 313, 497
MluNI TGGCCA 1 cut(s) 621
MlyI GAGTC 3 cut(s) 51, 675, 682
MnlI CCTC 9 cut(s) 71, 74, 87, 115, 199, 517, 520, 568, 574
Mox20I TGGCCA 1 cut(s) 621
MroI TCCGGA 1 cut(s) 304
MscI TGGCCA 1 cut(s) 621
MseI TTAA 1 cut(s) 675
MslI CAYNNNNRTG 2 cut(s) 279, 573
Msp20I TGGCCA 1 cut(s) 621
MspI CCGG 1 cut(s) 305
MunI CAATTG 1 cut(s) 497
MwoI GCNNNNNNNGC 2 cut(s) 233, 586
NcoI CCATGG 1 cut(s) 716
NlaIII CATG 5 cut(s) 278, 578, 629, 695, 720
NlaIV GGNNCC 3 cut(s) 201, 303, 504
PagI TCATGA 3 cut(s) 274, 574, 691
PcsI WCGNNNNNNNCGW 2 cut(s) 324, 600
PfeI GAWTC 2 cut(s) 373, 467
PkrI GCNGC 5 cut(s) 336, 489, 582, 585, 588
PleI GAGTC 3 cut(s) 51, 675, 682
PpsI GAGTC 3 cut(s) 51, 675, 682
PspN4I GGNNCC 3 cut(s) 201, 303, 504
PspPI GGNCC 1 cut(s) 529
PstI CTGCAG 1 cut(s) 336
PsuI RGATCY 3 cut(s) 40, 199, 339
RseI CAYNNNNRTG 2 cut(s) 279, 573
SaqAI TTAA 1 cut(s) 675
SatI GCNGC 5 cut(s) 335, 488, 581, 584, 587
Sau96I GGNCC 1 cut(s) 529
SchI GAGTC 3 cut(s) 51, 675, 682
SetI ASST 9 cut(s) 49, 255, 300, 417, 445, 508, 518, 591, 712
SfaNI GCATC 1 cut(s) 397
SfcI CTRYAG 1 cut(s) 332
SinI GGWCC 1 cut(s) 529
SmiMI CAYNNNNRTG 2 cut(s) 279, 573
SpeI ACTAGT 1 cut(s) 188
Sse9I AATT 4 cut(s) 130, 255, 313, 497
SsiI CCGC 2 cut(s) 290, 721
SspMI CTAG 3 cut(s) 44, 189, 444
StyI CCWWGG 1 cut(s) 716
TaqI TCGA 1 cut(s) 645
TasI AATT 4 cut(s) 130, 255, 313, 497
TfiI GAWTC 2 cut(s) 373, 467
Tru1I TTAA 1 cut(s) 675
Tru9I TTAA 1 cut(s) 675
TscAI CASTG 1 cut(s) 229
TseI GCWGC 5 cut(s) 334, 487, 580, 583, 586
TspDTI ATGAA 2 cut(s) 291, 684
TspRI CASTG 1 cut(s) 229
VpaK11BI GGWCC 1 cut(s) 529
XapI RAATTY 1 cut(s) 130
XspI CTAG 3 cut(s) 44, 189, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.