Rh5DG318300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000636
Physical Location & Seq
Reverse (-)
40953799 .. 40954404
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG318300.1

Sequence Viewer

Length: 606 bp
ATGGATGAGTTCACCATCAACCAAGCACCCGATTTGGCTTTGTGCCGACTCAAAGTCAATGACAAAGGAGGAGGAAGAAAAAAGAGGAAGAAGAGTTCTGATGAGACTAATGAGGATGAGAATCACAGAAAGACAATGACTTTCAAAAACCGAAAACTTGAACCGAAAAGAGTTCAAGTTCAAAACAACATGTGTGAGCAACAAAAGGGGAGTGCCTCATTTAGTAGTACTAGCACTACACAGCAACTGCCCCCACAATGTGATGATCATGATTACTGTGTGGATGAGAACCTAGTGTTCTCTCCAACTGGCTTGGTTGATGATTATCATGACATTTTGAATAGTGATCAGTTTATGGCTTCTCTTGATCAATGGTATGAGGAACAACAACAACAGTTTTCGGATTCTTCACTACTAGTGCCGCAACAACAAGTAGAACCTAACAACAGTTGTGAGGAACAACAACAGCAACAAGATGAGCAAAAATTGCGGCCTTCTCCCTCTCTTGTACACGAGCAGCAGCTCTGTGGTGGTTTTGATCTGATGGTTTATGGTTATCAGGACCCTGATATTGCACTCGATACTCCCTACTTACAGTCTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

23.13

Weight (kDa)

4.53

Isoelectric Point (pI)

54.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 422, 490
AdeI CACNNNGTG 1 cut(s) 260
AfaI GTAC 2 cut(s) 229, 510
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 5 cut(s) 145, 161, 176, 182, 340
AhdI GACNNNNNGTC 1 cut(s) 53
AhlI ACTAGT 1 cut(s) 415
AloI GAACNNNNNNTCC 2 cut(s) 79, 111
AluBI AGCT 1 cut(s) 523
AluI AGCT 1 cut(s) 523
Alw26I GTCTC 1 cut(s) 98
AlwNI CAGNNNCTG 1 cut(s) 247
AoxI GGCC 1 cut(s) 491
ApeKI GCWGC 2 cut(s) 517, 520
AspS9I GGNCC 1 cut(s) 562
AsuHPI GGTGA 1 cut(s) 4
AvaII GGWCC 1 cut(s) 562
BauI CACGAG 1 cut(s) 512
BbvI GCAGC 2 cut(s) 529, 532
BccI CCATC 2 cut(s) 23, 538
BclI TGATCA 3 cut(s) 265, 346, 367
BcoDI GTCTC 1 cut(s) 98
BcuI ACTAGT 1 cut(s) 415
BfaI CTAG 3 cut(s) 231, 293, 416
BisI GCNGC 4 cut(s) 422, 491, 518, 521
BlsI GCNGC 4 cut(s) 423, 492, 519, 522
BmcAI AGTACT 1 cut(s) 229
Bme18I GGWCC 1 cut(s) 562
BmeRI GACNNNNNGTC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 562
BmiI GGNNCC 1 cut(s) 564
BsaBI GATNNNNATC 2 cut(s) 120, 324
Bse1I ACTGG 1 cut(s) 313
Bse8I GATNNNNATC 2 cut(s) 120, 324
BseGI GGATG 3 cut(s) 10, 121, 289
BseJI GATNNNNATC 2 cut(s) 120, 324
BseNI ACTGG 1 cut(s) 313
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 2 cut(s) 529, 532
BshFI GGCC 1 cut(s) 493
BsmAI GTCTC 1 cut(s) 98
BsnI GGCC 1 cut(s) 493
Bsp1407I TGTACA 1 cut(s) 508
Bsp143I GATC 4 cut(s) 265, 346, 367, 538
BspACI CCGC 2 cut(s) 422, 490
BspANI GGCC 1 cut(s) 493
BspHI TCATGA 2 cut(s) 268, 328
BspLI GGNNCC 1 cut(s) 564
BsrGI TGTACA 1 cut(s) 508
BsrI ACTGG 1 cut(s) 313
BssMI GATC 4 cut(s) 265, 346, 367, 538
BssSI CACGAG 1 cut(s) 512
Bst2BI CACGAG 1 cut(s) 512
Bst4CI ACNGT 4 cut(s) 278, 396, 449, 597
Bst6I CTCTTC 1 cut(s) 86
BstAPI GCANNNNNTGC 1 cut(s) 487
BstAUI TGTACA 1 cut(s) 508
BstF5I GGATG 3 cut(s) 10, 121, 289
BstKTI GATC 4 cut(s) 268, 349, 370, 541
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 4 cut(s) 265, 346, 367, 538
BstMWI GCNNNNNNNGC 1 cut(s) 487
BstNSI RCATGY 1 cut(s) 193
BstV1I GCAGC 2 cut(s) 529, 532
BsuRI GGCC 1 cut(s) 493
BtsCI GGATG 3 cut(s) 10, 121, 289
CaiI CAGNNNCTG 1 cut(s) 247
CciI TCATGA 2 cut(s) 268, 328
Cfr13I GGNCC 1 cut(s) 562
Csp6I GTAC 2 cut(s) 228, 509
CviAII CATG 3 cut(s) 190, 269, 329
CviJI RGCY 5 cut(s) 38, 312, 359, 493, 523
CviKI_1 RGCY 5 cut(s) 38, 312, 359, 493, 523
CviQI GTAC 2 cut(s) 228, 509
DpnI GATC 4 cut(s) 267, 348, 369, 540
DpnII GATC 4 cut(s) 265, 346, 367, 538
DraIII CACNNNGTG 1 cut(s) 260
DriI GACNNNNNGTC 1 cut(s) 53
Eam1104I CTCTTC 1 cut(s) 86
Eam1105I GACNNNNNGTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 562
EcoO109I RGGNCCY 1 cut(s) 562
FaeI CATG 3 cut(s) 193, 272, 332
FaiI YATR 6 cut(s) 191, 270, 330, 356, 378, 552
FatI CATG 3 cut(s) 189, 268, 328
FbaI TGATCA 3 cut(s) 265, 346, 367
Fnu4HI GCNGC 4 cut(s) 422, 491, 518, 521
FokI GGATG 3 cut(s) 17, 128, 296
Fsp4HI GCNGC 4 cut(s) 422, 491, 518, 521
FspBI CTAG 3 cut(s) 231, 293, 416
GluI GCNGC 4 cut(s) 422, 491, 518, 521
HaeIII GGCC 1 cut(s) 493
Hin1II CATG 3 cut(s) 193, 272, 332
HinfI GANTC 3 cut(s) 48, 121, 404
HphI GGTGA 1 cut(s) 4
Hpy166II GTNNAC 2 cut(s) 12, 511
Hpy188I TCNGA 4 cut(s) 100, 403, 543, 601
Hpy188III TCNNGA 4 cut(s) 269, 329, 365, 560
Hpy8I GTNNAC 2 cut(s) 12, 511
HpyAV CCTTC 1 cut(s) 504
HpyCH4III ACNGT 4 cut(s) 278, 396, 449, 597
HpyCH4V TGCA 1 cut(s) 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 487
Hsp92II CATG 3 cut(s) 193, 272, 332
Ksp22I TGATCA 3 cut(s) 265, 346, 367
Kzo9I GATC 4 cut(s) 265, 346, 367, 538
LpnPI CCDG 3 cut(s) 294, 545, 579
Lsp1109I GCAGC 2 cut(s) 529, 532
MaeI CTAG 3 cut(s) 231, 293, 416
MalI GATC 4 cut(s) 267, 348, 369, 540
MboI GATC 4 cut(s) 265, 346, 367, 538
MboII GAAGA 4 cut(s) 87, 100, 103, 399
MluCI AATT 1 cut(s) 485
MlyI GAGTC 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 329
MnlI CCTC 8 cut(s) 62, 65, 78, 106, 226, 373, 448, 511
MwoI GCNNNNNNNGC 1 cut(s) 487
NdeII GATC 4 cut(s) 265, 346, 367, 538
NlaIII CATG 3 cut(s) 193, 272, 332
NlaIV GGNNCC 1 cut(s) 564
NspI RCATGY 1 cut(s) 193
PagI TCATGA 2 cut(s) 268, 328
PciI ACATGT 1 cut(s) 189
PfeI GAWTC 2 cut(s) 121, 404
PkrI GCNGC 4 cut(s) 423, 492, 519, 522
PleI GAGTC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 42
PpuMI RGGWCCY 1 cut(s) 562
PscI ACATGT 1 cut(s) 189
Psp5II RGGWCCY 1 cut(s) 562
PspN4I GGNNCC 1 cut(s) 564
PspPI GGNCC 1 cut(s) 562
PspPPI RGGWCCY 1 cut(s) 562
PstNI CAGNNNCTG 1 cut(s) 247
RsaI GTAC 2 cut(s) 229, 510
RsaNI GTAC 2 cut(s) 228, 509
SatI GCNGC 4 cut(s) 422, 491, 518, 521
Sau3AI GATC 4 cut(s) 265, 346, 367, 538
Sau96I GGNCC 1 cut(s) 562
ScaI AGTACT 1 cut(s) 229
SchI GAGTC 1 cut(s) 42
SetI ASST 3 cut(s) 294, 442, 525
SinI GGWCC 1 cut(s) 562
SpeI ACTAGT 1 cut(s) 415
Sse9I AATT 1 cut(s) 485
SsiI CCGC 2 cut(s) 422, 490
SspMI CTAG 3 cut(s) 231, 293, 416
TaaI ACNGT 4 cut(s) 278, 396, 449, 597
TaqI TCGA 1 cut(s) 579
TasI AATT 1 cut(s) 485
TatI WGTACW 2 cut(s) 227, 508
TauI GCSGC 2 cut(s) 424, 493
TfiI GAWTC 2 cut(s) 121, 404
TseI GCWGC 2 cut(s) 517, 520
VpaK11BI GGWCC 1 cut(s) 562
XceI RCATGY 1 cut(s) 193
XspI CTAG 3 cut(s) 231, 293, 416
ZrmI AGTACT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.