Rh5DG347500
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000636
Physical Location & Seq
Forward (+)
47477834 .. 47479473
1640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG347500.1

Sequence Viewer

Length: 1020 bp
ATGGCTTATTCTTCTTCTTCAATTTCTTGTTCCCTGGAAGACCTTGATGTGGGGGTTGTGAAAACATTCCACCCCACTGATTCTGATTTAGTGGGAACCTATCTCTACAACAGAATCAAGTCCCCAACCCCAATTGGAGGAAAACAAACCTTCCCTGAGATTGAAATATATGGCACCACAGGTTTACCACCATGGGATATTTGGAGAATTTATGAGCCTTCCAAATTTCCACATCAAGATTATATCTATTTCTTCTCCCGGGTCAAGAAGTTGGGTTCCCGTTGTTTTCGCAGAATTGGCTGCGATGGGGGCACGTGGAGCGAGACTGAAGCTGCTAAACCTGTCTATATCAGTGGTGGAATTGAGGAGCCTTATGGGAAACTAAGGAAATTTAGATACGAAAACAACAAAGACAGAGGCTTTGAACACCACGCTGCTTGGTTGATGGATGAGTTCACCATCAACCAAGCACCCGATTTGGCTTTGTGCCGACTCAAAATCAATGATAAAGGTGGAGGAGGGAGAAAAAAGAGGAAGAAGACTTCTGATGAGACTAATGAGAATCACAGAAAGACAATGTCTTTCAAAAACCGAAAACTTGAACCGAAAAGAGTTCAAGTTCAAAACAACATGTGTGAGCAACAAAAGAAAAGTGCCTCATTTAGTAGTACTAGCACCACACAGCAACTGCCCCCACAATGTGATGATCATGGTTACTGTATGGATGAGAACCTACTTTTCTCTCCAACCGGCTTGGTTGATGATTATGATGACATTTTGAATAGTGATCAGTTTCTGGCTTCTCTTGATCAATGGTATGAGGACCAACAACAACAACAGTTTTCGGATTCTTCACTACTAGTGCCGCAACAAGTAGAACCTAACAACAGTTGTGAGGAACAACAACAGCAACAAGGTGAGCAGCAGCTCTGTGGTGGTTTTGATATGACGGTTCATGACCTTGATATTGATCTCGATGATATTGATCTTGATACTCTACTTACAGTCGGACGAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

339

Amino Acids

38.78

Weight (kDa)

5.01

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 22 - 153 2.4e-15 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AciI CCGC 1 cut(s) 866
AcsI RAATTY 4 cut(s) 207, 224, 389, 1014
AcuI CTGAAG 1 cut(s) 348
AcvI CACGTG 1 cut(s) 315
AdeI CACNNNGTG 1 cut(s) 701
AfaI GTAC 1 cut(s) 670
AfiI CCNNNNNNNGG 2 cut(s) 49, 137
AflIII ACRYGT 1 cut(s) 630
AgsI TTSAA 8 cut(s) 21, 164, 425, 586, 602, 617, 623, 781
AhlI ACTAGT 1 cut(s) 859
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 2 cut(s) 332, 928
AluI AGCT 2 cut(s) 332, 928
Alw26I GTCTC 2 cut(s) 317, 545
AlwNI CAGNNNCTG 2 cut(s) 688, 796
Ama87I CYCGRG 1 cut(s) 258
ApeKI GCWGC 5 cut(s) 300, 332, 434, 922, 925
ApoI RAATTY 4 cut(s) 207, 224, 389, 1014
ArsI GACNNNNNNTTYG 2 cut(s) 404, 436
Asp700I GAANNNNTTC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 823
AsuC2I CCSGG 2 cut(s) 259, 260
AsuHPI GGTGA 2 cut(s) 448, 929
AvaI CYCGRG 1 cut(s) 258
AvaII GGWCC 1 cut(s) 823
BaeGI GKGCMC 1 cut(s) 314
BanI GGYRCC 1 cut(s) 173
BbrPI CACGTG 1 cut(s) 315
BbsI GAAGAC 2 cut(s) 45, 545
BbvI GCAGC 5 cut(s) 287, 319, 421, 934, 937
BccI CCATC 3 cut(s) 299, 439, 467
BciT130I CCWGG 1 cut(s) 35
BclI TGATCA 3 cut(s) 706, 787, 808
BcnI CCSGG 2 cut(s) 259, 260
BcoDI GTCTC 2 cut(s) 317, 545
BcuI ACTAGT 1 cut(s) 859
BfaI CTAG 2 cut(s) 672, 860
BisI GCNGC 6 cut(s) 301, 333, 435, 866, 923, 926
BlsI GCNGC 6 cut(s) 302, 334, 436, 867, 924, 927
BmcAI AGTACT 1 cut(s) 670
Bme1390I CCNGG 3 cut(s) 35, 259, 260
Bme18I GGWCC 1 cut(s) 823
BmeT110I CYCGRG 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 823
BmiI GGNNCC 4 cut(s) 97, 175, 277, 369
BmrFI CCNGG 3 cut(s) 35, 259, 260
BpiI GAAGAC 2 cut(s) 45, 545
BpuMI CCSGG 2 cut(s) 259, 260
BsaAI YACGTR 1 cut(s) 315
BsaBI GATNNNNATC 2 cut(s) 969, 984
BsaJI CCNNGG 3 cut(s) 33, 191, 258
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 137
Bse118I RCCGGY 1 cut(s) 749
Bse8I GATNNNNATC 2 cut(s) 969, 984
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 3 cut(s) 33, 191, 258
BseGI GGATG 2 cut(s) 454, 730
BseJI GATNNNNATC 2 cut(s) 969, 984
BseLI CCNNNNNNNGG 2 cut(s) 49, 137
BseMII CTCAG 1 cut(s) 147
BseRI GAGGAG 2 cut(s) 380, 531
BseSI GKGCMC 1 cut(s) 314
BseXI GCAGC 5 cut(s) 287, 319, 421, 934, 937
BshNI GGYRCC 1 cut(s) 173
BsiHKCI CYCGRG 1 cut(s) 258
BsiSI CCGG 2 cut(s) 259, 750
BslFI GGGAC 1 cut(s) 106
BslI CCNNNNNNNGG 2 cut(s) 49, 137
BsmAI GTCTC 2 cut(s) 317, 545
BsmFI GGGAC 1 cut(s) 106
BsoBI CYCGRG 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 314
Bsp143I GATC 5 cut(s) 706, 787, 808, 970, 985
Bsp19I CCATGG 1 cut(s) 191
BspACI CCGC 1 cut(s) 866
BspCNI CTCAG 1 cut(s) 148
BspHI TCATGA 1 cut(s) 955
BspLI GGNNCC 4 cut(s) 97, 175, 277, 369
BspT107I GGYRCC 1 cut(s) 173
BsrFI RCCGGY 1 cut(s) 749
BssAI RCCGGY 1 cut(s) 749
BssECI CCNNGG 3 cut(s) 33, 191, 258
BssMI GATC 5 cut(s) 706, 787, 808, 970, 985
BssT1I CCWWGG 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 5 cut(s) 719, 840, 890, 952, 1006
BstBAI YACGTR 1 cut(s) 315
BstDEI CTNAG 2 cut(s) 156, 383
BstDSI CCRYGG 1 cut(s) 191
BstF5I GGATG 2 cut(s) 454, 730
BstKTI GATC 5 cut(s) 709, 790, 811, 973, 988
BstMAI GTCTC 2 cut(s) 317, 545
BstMBI GATC 5 cut(s) 706, 787, 808, 970, 985
BstMWI GCNNNNNNNGC 3 cut(s) 297, 309, 318
BstNI CCWGG 1 cut(s) 35
BstNSI RCATGY 1 cut(s) 634
BstSCI CCNGG 3 cut(s) 33, 257, 258
BstSLI GKGCMC 1 cut(s) 314
BstV1I GCAGC 5 cut(s) 287, 319, 421, 934, 937
BstV2I GAAGAC 2 cut(s) 45, 545
BtgI CCRYGG 1 cut(s) 191
BtgZI GCGATG 1 cut(s) 318
BtsCI GGATG 2 cut(s) 454, 730
BtsIMutI CAGTG 2 cut(s) 75, 358
CaiI CAGNNNCTG 2 cut(s) 688, 796
CciI TCATGA 1 cut(s) 955
Cfr10I RCCGGY 1 cut(s) 749
Cfr13I GGNCC 1 cut(s) 823
Cfr9I CCCGGG 1 cut(s) 258
Csp6I GTAC 1 cut(s) 669
CspCI CAANNNNNGTGG 2 cut(s) 419, 454
CviAII CATG 4 cut(s) 192, 631, 710, 956
CviQI GTAC 1 cut(s) 669
DdeI CTNAG 2 cut(s) 156, 383
DpnI GATC 5 cut(s) 708, 789, 810, 972, 987
DpnII GATC 5 cut(s) 706, 787, 808, 970, 985
DraIII CACNNNGTG 1 cut(s) 701
Eco130I CCWWGG 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 823
Eco57I CTGAAG 1 cut(s) 348
Eco72I CACGTG 1 cut(s) 315
Eco88I CYCGRG 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 191
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 4 cut(s) 195, 634, 713, 959
FaqI GGGAC 1 cut(s) 106
FatI CATG 4 cut(s) 191, 630, 709, 955
FbaI TGATCA 3 cut(s) 706, 787, 808
Fnu4HI GCNGC 6 cut(s) 301, 333, 435, 866, 923, 926
FokI GGATG 2 cut(s) 461, 737
Fsp4HI GCNGC 6 cut(s) 301, 333, 435, 866, 923, 926
FspBI CTAG 2 cut(s) 672, 860
GluI GCNGC 6 cut(s) 301, 333, 435, 866, 923, 926
HapII CCGG 2 cut(s) 259, 750
Hin1II CATG 4 cut(s) 195, 634, 713, 959
HinfI GANTC 5 cut(s) 80, 114, 492, 562, 848
HpaII CCGG 2 cut(s) 259, 750
HphI GGTGA 2 cut(s) 448, 929
Hpy166II GTNNAC 2 cut(s) 185, 456
Hpy188I TCNGA 4 cut(s) 85, 547, 847, 1010
Hpy188III TCNNGA 6 cut(s) 236, 265, 806, 956, 974, 989
Hpy8I GTNNAC 2 cut(s) 185, 456
HpyAV CCTTC 2 cut(s) 160, 228
HpyCH4III ACNGT 5 cut(s) 719, 840, 890, 952, 1006
HpyCH4IV ACGT 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 3 cut(s) 297, 309, 318
HpyF3I CTNAG 2 cut(s) 156, 383
HpySE526I ACGT 1 cut(s) 314
Hsp92II CATG 4 cut(s) 195, 634, 713, 959
Ksp22I TGATCA 3 cut(s) 706, 787, 808
Kzo9I GATC 5 cut(s) 706, 787, 808, 970, 985
LmnI GCTCC 2 cut(s) 318, 367
LpnPI CCDG 8 cut(s) 20, 47, 165, 168, 272, 354, 763, 782
Lsp1109I GCAGC 5 cut(s) 287, 319, 421, 934, 937
MaeI CTAG 2 cut(s) 672, 860
MaeII ACGT 1 cut(s) 314
MaeIII GTNAC 1 cut(s) 713
MalI GATC 5 cut(s) 708, 789, 810, 972, 987
MboI GATC 5 cut(s) 706, 787, 808, 970, 985
MboII GAAGA 8 cut(s) 3, 6, 9, 50, 244, 547, 550, 843
MfeI CAATTG 1 cut(s) 132
MhlI GDGCHC 1 cut(s) 314
MluCI AATT 8 cut(s) 21, 132, 207, 224, 294, 360, 389, 1014
MlyI GAGTC 1 cut(s) 486
MmeI TCCRAC 2 cut(s) 770, 988
MnlI CCTC 9 cut(s) 131, 358, 410, 509, 512, 525, 667, 814, 889
MroXI GAANNNNTTC 1 cut(s) 65
MseI TTAA 1 cut(s) 1018
MspI CCGG 2 cut(s) 259, 750
MspR9I CCNGG 3 cut(s) 35, 259, 260
MunI CAATTG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 35
MwoI GCNNNNNNNGC 3 cut(s) 297, 309, 318
NciI CCSGG 2 cut(s) 259, 260
NcoI CCATGG 1 cut(s) 191
NdeII GATC 5 cut(s) 706, 787, 808, 970, 985
NlaIII CATG 4 cut(s) 195, 634, 713, 959
NlaIV GGNNCC 4 cut(s) 97, 175, 277, 369
NspI RCATGY 1 cut(s) 634
PagI TCATGA 1 cut(s) 955
PciI ACATGT 1 cut(s) 630
PdmI GAANNNNTTC 1 cut(s) 65
PfeI GAWTC 4 cut(s) 80, 114, 562, 848
PflFI GACNNNGTC 1 cut(s) 577
PkrI GCNGC 6 cut(s) 302, 334, 436, 867, 924, 927
PleI GAGTC 1 cut(s) 486
PmaCI CACGTG 1 cut(s) 315
PmlI CACGTG 1 cut(s) 315
PpsI GAGTC 1 cut(s) 486
Ppu21I YACGTR 1 cut(s) 315
PscI ACATGT 1 cut(s) 630
Psp6I CCWGG 1 cut(s) 33
PspCI CACGTG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 4 cut(s) 97, 175, 277, 369
PspPI GGNCC 1 cut(s) 823
PstNI CAGNNNCTG 2 cut(s) 688, 796
PsyI GACNNNGTC 1 cut(s) 577
RsaI GTAC 1 cut(s) 670
RsaNI GTAC 1 cut(s) 669
SaqAI TTAA 1 cut(s) 1018
SatI GCNGC 6 cut(s) 301, 333, 435, 866, 923, 926
Sau3AI GATC 5 cut(s) 706, 787, 808, 970, 985
Sau96I GGNCC 1 cut(s) 823
ScaI AGTACT 1 cut(s) 670
SchI GAGTC 1 cut(s) 486
ScrFI CCNGG 3 cut(s) 35, 259, 260
SduI GDGCHC 1 cut(s) 314
SinI GGWCC 1 cut(s) 823
SmaI CCCGGG 1 cut(s) 260
SpeI ACTAGT 1 cut(s) 859
Sse9I AATT 8 cut(s) 21, 132, 207, 224, 294, 360, 389, 1014
SsiI CCGC 1 cut(s) 866
SspMI CTAG 2 cut(s) 672, 860
StyD4I CCNGG 3 cut(s) 33, 257, 258
StyI CCWWGG 1 cut(s) 191
TaaI ACNGT 5 cut(s) 719, 840, 890, 952, 1006
TaiI ACGT 1 cut(s) 317
TaqI TCGA 1 cut(s) 975
TasI AATT 8 cut(s) 21, 132, 207, 224, 294, 360, 389, 1014
TatI WGTACW 1 cut(s) 668
TauI GCSGC 1 cut(s) 868
TfiI GAWTC 4 cut(s) 80, 114, 562, 848
Tru1I TTAA 1 cut(s) 1018
Tru9I TTAA 1 cut(s) 1018
TscAI CASTG 2 cut(s) 82, 358
TseI GCWGC 5 cut(s) 300, 332, 434, 922, 925
TspDTI ATGAA 1 cut(s) 944
TspMI CCCGGG 1 cut(s) 258
TspRI CASTG 2 cut(s) 82, 358
Tth111I GACNNNGTC 1 cut(s) 577
VpaK11BI GGWCC 1 cut(s) 823
XapI RAATTY 4 cut(s) 207, 224, 389, 1014
XceI RCATGY 1 cut(s) 634
XcmI CCANNNNNNNNNTGG 1 cut(s) 198
XmaI CCCGGG 1 cut(s) 258
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 2 cut(s) 672, 860
ZrmI AGTACT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.