Rorug02G0147900
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000636
Physical Location & Seq
Reverse (-)
12968225 .. 12970940
2716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0147900.1

Sequence Viewer

Length: 534 bp
ATGAAGGATGACGATGGCCTTCCGACGACGGCGGCGGGCGGCGGGAAGAGGGAGAGCTCCGATTCGAGCCTAGTACTCGGGAAAGGCAGGTACAAGTTCTGGGCATTGGCGGCGATTTTGCTGCTGGCGTTCTGGTCAATGTTCACCGGCACCGTCACGCTCCGGTGGTCGGCCGGGAACCTTAATCGCTTCTCCGACGAATTTGATTCCCCTATTCACGACGATCTCGACGTCCTCGAAATGGAGGAGAGGGAGAAGGTGGTGGAGCACATGTGGGATGTGTACACTAATAGCCGTCGGATCAGATTACCCAGATTCTGGCAGGAGGCCTTTGAGGCTGCTTATGAGGACTTGACCAGTGACCTCCCTGGTGTTCGTGACTCTGCCATTTCCGAGATCGCAAAGATGTCGGTGCGGTCAGTCGATCTCGATCCACCTCCGGTCCAATCTGCTAGCGCACGGGAATTTACAAAAGCACTGAAGCATCCAGATAAAGCTAGGGAACTCTTGTCCTCAACGAAGAGTGGTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

177

Amino Acids

19.91

Weight (kDa)

5.29

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1195 PF06708 10 - 147 1.5e-74 Protein of unknown function (DUF1195)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 234
Acc36I ACCTGC 1 cut(s) 78
AccB1I GGYRCC 1 cut(s) 149
AccB7I CCANNNNNTGG 1 cut(s) 318
AciI CCGC 6 cut(s) 32, 35, 39, 42, 110, 415
AclWI GGATC 2 cut(s) 308, 425
AcoI YGGCCR 1 cut(s) 171
AcsI RAATTY 2 cut(s) 200, 464
AcuI CTGAAG 1 cut(s) 500
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 3 cut(s) 75, 92, 284
AfiI CCNNNNNNNGG 3 cut(s) 169, 241, 318
AflIII ACRYGT 1 cut(s) 270
AjnI CCWGG 1 cut(s) 367
AluBI AGCT 2 cut(s) 57, 497
AluI AGCT 2 cut(s) 57, 497
Alw21I GWGCWC 2 cut(s) 59, 270
AlwI GGATC 2 cut(s) 308, 425
AlwNI CAGNNNCTG 1 cut(s) 318
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 3 cut(s) 16, 171, 327
ApeKI GCWGC 2 cut(s) 121, 338
ApoI RAATTY 2 cut(s) 200, 464
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 1 cut(s) 442
AsuC2I CCSGG 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 136
AsuNHI GCTAGC 1 cut(s) 452
AvaI CYCGRG 1 cut(s) 77
AvaII GGWCC 1 cut(s) 442
BanI GGYRCC 1 cut(s) 149
BanII GRGCYC 1 cut(s) 59
Bbv12I GWGCWC 2 cut(s) 59, 270
BbvI GCAGC 2 cut(s) 108, 325
BccI CCATC 1 cut(s) 8
BceAI ACGGC 2 cut(s) 45, 279
BcgI CGANNNNNNTGC 4 cut(s) 103, 137, 390, 424
BciT130I CCWGG 1 cut(s) 369
BcnI CCSGG 1 cut(s) 175
BfaI CTAG 3 cut(s) 71, 453, 498
BfuAI ACCTGC 1 cut(s) 78
BglI GCCNNNNNGGC 1 cut(s) 335
BisI GCNGC 5 cut(s) 33, 40, 111, 122, 339
BlsI GCNGC 5 cut(s) 34, 41, 112, 123, 340
BmcAI AGTACT 1 cut(s) 75
Bme1390I CCNGG 2 cut(s) 175, 369
Bme18I GGWCC 1 cut(s) 442
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 442
BmiI GGNNCC 2 cut(s) 151, 179
BmrFI CCNGG 2 cut(s) 175, 369
BmsI GCATC 1 cut(s) 493
BmtI GCTAGC 1 cut(s) 456
BpuMI CCSGG 1 cut(s) 175
BsaBI GATNNNNATC 1 cut(s) 429
BsaHI GRCGYC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 367
BsaWI WCCGGW 2 cut(s) 162, 439
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 241, 318
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 357
Bse8I GATNNNNATC 1 cut(s) 429
BseBI CCWGG 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 3 cut(s) 13, 283, 484
BseJI GATNNNNATC 1 cut(s) 429
BseLI CCNNNNNNNGG 3 cut(s) 169, 241, 318
BseNI ACTGG 1 cut(s) 357
BseRI GAGGAG 1 cut(s) 260
BseX3I CGGCCG 1 cut(s) 171
BseXI GCAGC 2 cut(s) 108, 325
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 3 cut(s) 18, 173, 329
BshNI GGYRCC 1 cut(s) 149
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 2 cut(s) 59, 270
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 4 cut(s) 147, 163, 174, 440
BslI CCNNNNNNNGG 3 cut(s) 169, 241, 318
BsnI GGCC 3 cut(s) 18, 173, 329
BsoBI CYCGRG 1 cut(s) 77
Bsp1286I GDGCHC 2 cut(s) 59, 270
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 5 cut(s) 223, 300, 396, 424, 430
BspACI CCGC 6 cut(s) 32, 35, 39, 42, 110, 415
BspANI GGCC 3 cut(s) 18, 173, 329
BspLI GGNNCC 2 cut(s) 151, 179
BspMI ACCTGC 1 cut(s) 78
BspOI GCTAGC 1 cut(s) 456
BspPI GGATC 2 cut(s) 308, 425
BspT107I GGYRCC 1 cut(s) 149
BsrFI RCCGGY 1 cut(s) 146
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 1 cut(s) 357
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 5 cut(s) 223, 300, 396, 424, 430
BssNI GRCGYC 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 2 cut(s) 41, 515
BstACI GRCGYC 1 cut(s) 231
BstAUI TGTACA 1 cut(s) 282
BstC8I GCNNGC 3 cut(s) 37, 126, 454
BstF5I GGATG 3 cut(s) 13, 283, 484
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 5 cut(s) 226, 303, 399, 427, 433
BstMBI GATC 5 cut(s) 223, 300, 396, 424, 430
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 2 cut(s) 110, 335
BstNI CCWGG 1 cut(s) 369
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 2 cut(s) 173, 367
BstV1I GCAGC 2 cut(s) 108, 325
BstZI CGGCCG 1 cut(s) 171
BsuRI GGCC 3 cut(s) 18, 173, 329
BtsCI GGATG 3 cut(s) 13, 283, 484
BtsIMutI CAGTG 2 cut(s) 364, 476
BveI ACCTGC 1 cut(s) 78
Cac8I GCNNGC 3 cut(s) 37, 126, 454
CaiI CAGNNNCTG 1 cut(s) 318
CfoI GCGC 1 cut(s) 458
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 442
Csp6I GTAC 3 cut(s) 74, 91, 283
CviAII CATG 1 cut(s) 271
CviJI RGCY 8 cut(s) 18, 57, 69, 173, 294, 329, 338, 497
CviKI_1 RGCY 8 cut(s) 18, 57, 69, 173, 294, 329, 338, 497
CviQI GTAC 3 cut(s) 74, 91, 283
DpnI GATC 5 cut(s) 225, 302, 398, 426, 432
DpnII GATC 5 cut(s) 223, 300, 396, 424, 430
EaeI YGGCCR 1 cut(s) 171
EagI CGGCCG 1 cut(s) 171
Eam1104I CTCTTC 2 cut(s) 41, 515
EarI CTCTTC 2 cut(s) 41, 515
Ecl136II GAGCTC 1 cut(s) 57
EclXI CGGCCG 1 cut(s) 171
Eco147I AGGCCT 1 cut(s) 329
Eco24I GRGCYC 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 442
Eco52I CGGCCG 1 cut(s) 171
Eco53kI GAGCTC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 500
Eco88I CYCGRG 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 367
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 1 cut(s) 274
FaiI YATR 2 cut(s) 272, 345
FatI CATG 1 cut(s) 270
FauI CCCGC 2 cut(s) 28, 35
Fnu4HI GCNGC 5 cut(s) 33, 40, 111, 122, 339
FokI GGATG 3 cut(s) 20, 290, 471
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 5 cut(s) 33, 40, 111, 122, 339
FspBI CTAG 3 cut(s) 71, 453, 498
GlaI GCGC 1 cut(s) 457
GluI GCNGC 5 cut(s) 33, 40, 111, 122, 339
HaeIII GGCC 3 cut(s) 18, 173, 329
HapII CCGG 4 cut(s) 147, 163, 174, 440
HhaI GCGC 1 cut(s) 458
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 1 cut(s) 274
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HinfI GANTC 4 cut(s) 62, 206, 315, 380
HpaII CCGG 4 cut(s) 147, 163, 174, 440
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 3 cut(s) 144, 283, 285
Hpy188I TCNGA 6 cut(s) 24, 61, 196, 300, 305, 394
Hpy188III TCNNGA 6 cut(s) 79, 218, 227, 377, 428, 488
Hpy8I GTNNAC 3 cut(s) 144, 283, 285
Hpy99I CGWCG 6 cut(s) 28, 31, 200, 224, 233, 300
HpyAV CCTTC 2 cut(s) 29, 250
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 335
HpySE526I ACGT 1 cut(s) 231
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 1 cut(s) 274
HspAI GCGC 1 cut(s) 456
Kzo9I GATC 5 cut(s) 223, 300, 396, 424, 430
LmnI GCTCC 3 cut(s) 62, 165, 265
Lsp1109I GCAGC 2 cut(s) 108, 325
LweI GCATC 1 cut(s) 493
MaeI CTAG 3 cut(s) 71, 453, 498
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 3 cut(s) 154, 359, 377
MalI GATC 5 cut(s) 225, 302, 398, 426, 432
MboI GATC 5 cut(s) 223, 300, 396, 424, 430
MboII GAAGA 2 cut(s) 58, 532
MhlI GDGCHC 2 cut(s) 59, 270
MluCI AATT 2 cut(s) 200, 464
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 3 cut(s) 47, 219, 278
MseI TTAA 1 cut(s) 183
MspI CCGG 4 cut(s) 147, 163, 174, 440
MspR9I CCNGG 2 cut(s) 175, 369
MvaI CCWGG 1 cut(s) 369
MwoI GCNNNNNNNGC 2 cut(s) 110, 335
NciI CCSGG 1 cut(s) 175
NdeII GATC 5 cut(s) 223, 300, 396, 424, 430
NheI GCTAGC 1 cut(s) 452
NlaIII CATG 1 cut(s) 274
NlaIV GGNNCC 2 cut(s) 151, 179
NmuCI GTSAC 3 cut(s) 154, 359, 377
NspI RCATGY 1 cut(s) 274
PceI AGGCCT 1 cut(s) 329
PciI ACATGT 1 cut(s) 270
PcsI WCGNNNNNNNCGW 3 cut(s) 225, 228, 234
PfeI GAWTC 3 cut(s) 62, 206, 315
PflMI CCANNNNNTGG 1 cut(s) 318
PkrI GCNGC 5 cut(s) 34, 41, 112, 123, 340
PleI GAGTC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 374
PscI ACATGT 1 cut(s) 270
Psp124BI GAGCTC 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 367
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 2 cut(s) 151, 179
PspPI GGNCC 1 cut(s) 442
PstNI CAGNNNCTG 1 cut(s) 318
RsaI GTAC 3 cut(s) 75, 92, 284
RsaNI GTAC 3 cut(s) 74, 91, 283
SacI GAGCTC 1 cut(s) 59
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 5 cut(s) 33, 40, 111, 122, 339
Sau3AI GATC 5 cut(s) 223, 300, 396, 424, 430
Sau96I GGNCC 1 cut(s) 442
ScaI AGTACT 1 cut(s) 75
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 2 cut(s) 175, 369
SduI GDGCHC 2 cut(s) 59, 270
SetI ASST 8 cut(s) 59, 92, 183, 234, 261, 366, 439, 499
SfaNI GCATC 1 cut(s) 493
SinI GGWCC 1 cut(s) 442
Sse9I AATT 2 cut(s) 200, 464
SseBI AGGCCT 1 cut(s) 329
SsiI CCGC 6 cut(s) 32, 35, 39, 42, 110, 415
SspMI CTAG 3 cut(s) 71, 453, 498
SstI GAGCTC 1 cut(s) 59
StuI AGGCCT 1 cut(s) 329
StyD4I CCNGG 2 cut(s) 173, 367
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 1 cut(s) 234
TaqI TCGA 6 cut(s) 65, 228, 237, 423, 429, 529
TasI AATT 2 cut(s) 200, 464
TatI WGTACW 2 cut(s) 73, 282
TauI GCSGC 3 cut(s) 35, 42, 113
TfiI GAWTC 3 cut(s) 62, 206, 315
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 2 cut(s) 364, 483
TseFI GTSAC 3 cut(s) 154, 359, 377
TseI GCWGC 2 cut(s) 121, 338
Tsp45I GTSAC 3 cut(s) 154, 359, 377
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 364, 483
Van91I CCANNNNNTGG 1 cut(s) 318
VpaK11BI GGWCC 1 cut(s) 442
XapI RAATTY 2 cut(s) 200, 464
XceI RCATGY 1 cut(s) 274
XspI CTAG 3 cut(s) 71, 453, 498
ZraI GACGTC 1 cut(s) 232
ZrmI AGTACT 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.