Rh4BG071800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000636
Physical Location & Seq
Reverse (-)
12677897 .. 12678181
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG071800.1

Sequence Viewer

Length: 285 bp
ATGGCTTCTTCTTTTTCCTCTTCTGGATCAACTGGGTTGATGTGCCTGGAGGAGCTAGAGTGGGGTGTTGTAAAGACCTTCAAGCCTACGGATGCACAATTAGTGGGGTATTATCTGTATAATCAGATCATGATGGTTCATGGTGGGAATGGGAAGCAGACTTTTCCTGAGTTGGAATTGTATGGAAAAATTGGGACGGTGCTGTGGGTTATTTGGGATTCCTATGAGGAAATTAAAATTCCCACCAAGAATACTTGTATTTCTTTCCAATGGTCAAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.72

Weight (kDa)

5.72

Isoelectric Point (pI)

30.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 34
AcsI RAATTY 1 cut(s) 237
AgsI TTSAA 1 cut(s) 82
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
AlwI GGATC 1 cut(s) 34
ApoI RAATTY 1 cut(s) 237
BccI CCATC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 47
BfaI CTAG 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 47
BmrFI CCNGG 1 cut(s) 47
BmrI ACTGGG 1 cut(s) 42
BmsI GCATC 1 cut(s) 82
BmuI ACTGGG 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 68
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bse1I ACTGG 1 cut(s) 37
BseBI CCWGG 1 cut(s) 47
BseGI GGATG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 37
BseRI GAGGAG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 208
BsmFI GGGAC 1 cut(s) 208
Bsp143I GATC 2 cut(s) 26, 126
BspCNI CTCAG 1 cut(s) 160
BspHI TCATGA 1 cut(s) 129
BspPI GGATC 1 cut(s) 34
BsrI ACTGG 1 cut(s) 37
BssMI GATC 2 cut(s) 26, 126
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 25
BstDEI CTNAG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 97
BstKTI GATC 2 cut(s) 29, 129
BstMBI GATC 2 cut(s) 26, 126
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 45
BtsCI GGATG 1 cut(s) 97
CciI TCATGA 1 cut(s) 129
CviAII CATG 2 cut(s) 130, 140
CviJI RGCY 3 cut(s) 5, 55, 85
CviKI_1 RGCY 3 cut(s) 5, 55, 85
DdeI CTNAG 1 cut(s) 168
DpnI GATC 2 cut(s) 28, 128
DpnII GATC 2 cut(s) 26, 126
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 45
FaeI CATG 2 cut(s) 133, 143
FaiI YATR 5 cut(s) 120, 131, 141, 183, 225
FaqI GGGAC 1 cut(s) 208
FatI CATG 2 cut(s) 129, 139
FokI GGATG 1 cut(s) 104
FspBI CTAG 1 cut(s) 56
GsuI CTGGAG 1 cut(s) 68
Hin1II CATG 2 cut(s) 133, 143
HinfI GANTC 1 cut(s) 218
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 4 cut(s) 24, 130, 167, 276
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 1 cut(s) 95
HpyF3I CTNAG 1 cut(s) 168
Hsp92II CATG 2 cut(s) 133, 143
Kzo9I GATC 2 cut(s) 26, 126
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 5 cut(s) 9, 18, 32, 59, 180
LweI GCATC 1 cut(s) 82
MaeI CTAG 1 cut(s) 56
MalI GATC 2 cut(s) 28, 128
MboI GATC 2 cut(s) 26, 126
MboII GAAGA 1 cut(s) 12
MluCI AATT 5 cut(s) 98, 176, 189, 231, 237
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 3 cut(s) 28, 43, 220
MseI TTAA 1 cut(s) 234
MspR9I CCNGG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 47
NdeII GATC 2 cut(s) 26, 126
NlaIII CATG 2 cut(s) 133, 143
PagI TCATGA 1 cut(s) 129
PfeI GAWTC 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
SaqAI TTAA 1 cut(s) 234
Sau3AI GATC 2 cut(s) 26, 126
ScrFI CCNGG 1 cut(s) 47
SetI ASST 2 cut(s) 57, 80
SfaNI GCATC 1 cut(s) 82
Sse9I AATT 5 cut(s) 98, 176, 189, 231, 237
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 199
TasI AATT 5 cut(s) 98, 176, 189, 231, 237
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TspDTI ATGAA 1 cut(s) 128
TspGWI ACGGA 1 cut(s) 104
XapI RAATTY 1 cut(s) 237
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.