FvH4_3g36290
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000636
Physical Location & Seq
Reverse (-)
31099684 .. 31100561
878 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36290.t1

Sequence Viewer

Length: 867 bp
ATGGCGTCTTCGTCTTCATGTTGTGGGTCTAGTGGGTTGGTTCGCCTGGAGGAGCTACAGTGGGGAGTTGTCAAGACATTCAATCCCGCAGACACTCAATTAGTGGGTCATTATCTGTATAATCAGATCACGTTGGGTCATGGTGGAAATGGGATGCAGGCTTTTCCCGATTTGGATATCTATGGAGAATCCGGGATGGAGCCTTGGGCTATTTGGGATTCCTTGGAGCCAATCAGAATTCCTCACCAGGATTTCTCATATTTCTTTGCCAGAGTCAAGAAATTGAGTAGCAATGGTAAAGGGAAGCGCTTGTGCTGCAGAGTTGGGTCTGGGGGAACATGGAGTGAGACCGAGCCTGGTAAGGATGTTTTTGTCGACGGTGTTCAACAAGCCTATGGGAAGCTGAGGAAGTTACGATACGAAAACAAAGATGAGACATCTGTTGGCTATCAGCACCATGGTGCTTGGTTAATGGAGGAGTACACCATCAACCATTTACCGGATTTGGCTTTGTACCGACTGGAAGTCAATGATAAAGGAGGAGGAGCAAGGAACAAGAGGAAGACGATTTCTGATGAGAATCCCACCTCTTTCAAGAAGCAAAAACTTGAACTGAAAAGAGATCAACAGCCCTCACAATGTGATGATCATGATTACTCTGTGGATCAAAACCTTGTGTTGTCTCCCACTGGCTTTGGCTTGGATGATGATGATGATCAGTTTATGGCTAACCTTGATCAATGGAATGAGGAACTACAGCAGATTATCACTACAGTGCCGCAACAACAAGTAGTAGAACCTAACAGCAGTAACTGTGAGGAACTACAACAACAAGGGGAGCAGCAACTTCTGCCCTCTTGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

289

Amino Acids

32.63

Weight (kDa)

4.87

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 26 - 162 2.5e-14 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 375
AciI CCGC 2 cut(s) 87, 779
AclWI GGATC 1 cut(s) 672
AcsI RAATTY 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 641
AfaI GTAC 2 cut(s) 482, 515
AfeI AGCGCT 1 cut(s) 308
AfiI CCNNNNNNNGG 2 cut(s) 499, 861
AgsI TTSAA 4 cut(s) 82, 386, 595, 611
AhdI GACNNNNNGTC 1 cut(s) 524
AjnI CCWGG 3 cut(s) 45, 246, 355
AleI CACNNNNGTG 2 cut(s) 459, 773
AluBI AGCT 2 cut(s) 55, 403
AluI AGCT 2 cut(s) 55, 403
Alw26I GTCTC 3 cut(s) 341, 428, 687
AlwI GGATC 1 cut(s) 672
AlwNI CAGNNNCTG 1 cut(s) 813
Aor51HI AGCGCT 1 cut(s) 308
ApeKI GCWGC 2 cut(s) 315, 841
ApoI RAATTY 1 cut(s) 237
AspLEI GCGC 1 cut(s) 309
AsuC2I CCSGG 1 cut(s) 193
AsuHPI GGTGA 1 cut(s) 236
BarI GAAGNNNNNNTAC 2 cut(s) 401, 433
BbsI GAAGAC 2 cut(s) 6, 569
BbvCI CCTCAGC 1 cut(s) 404
BbvI GCAGC 2 cut(s) 302, 853
BccI CCATC 2 cut(s) 190, 494
BciT130I CCWGG 3 cut(s) 47, 248, 357
BclI TGATCA 3 cut(s) 646, 715, 736
BcnI CCSGG 1 cut(s) 193
BcoDI GTCTC 3 cut(s) 341, 428, 687
BfaI CTAG 1 cut(s) 30
BfmI CTRYAG 4 cut(s) 56, 316, 755, 771
BfoI RGCGCY 1 cut(s) 310
BisI GCNGC 3 cut(s) 316, 779, 842
BlsI GCNGC 3 cut(s) 317, 780, 843
Bme1390I CCNGG 4 cut(s) 47, 193, 248, 357
BmeRI GACNNNNNGTC 1 cut(s) 524
BmiI GGNNCC 2 cut(s) 201, 228
BmrFI CCNGG 4 cut(s) 47, 193, 248, 357
BmsI GCATC 1 cut(s) 144
BpiI GAAGAC 2 cut(s) 6, 569
BpmI CTGGAG 1 cut(s) 68
Bpu10I CCTNAGC 1 cut(s) 404
BpuMI CCSGG 1 cut(s) 193
BsaBI GATNNNNATC 2 cut(s) 579, 714
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 341
BsaJI CCNNGG 3 cut(s) 203, 222, 457
BsaWI WCCGGW 1 cut(s) 499
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 2 cut(s) 499, 861
Bse1I ACTGG 2 cut(s) 525, 694
Bse3DI GCAATG 1 cut(s) 298
Bse8I GATNNNNATC 2 cut(s) 579, 714
BseBI CCWGG 3 cut(s) 47, 248, 357
BseDI CCNNGG 3 cut(s) 203, 222, 457
BseGI GGATG 4 cut(s) 159, 201, 370, 709
BseJI GATNNNNATC 2 cut(s) 579, 714
BseLI CCNNNNNNNGG 2 cut(s) 499, 861
BseMI GCAATG 1 cut(s) 298
BseMII CTCAG 1 cut(s) 395
BseNI ACTGG 2 cut(s) 525, 694
BseRI GAGGAG 4 cut(s) 65, 491, 555, 558
BseXI GCAGC 2 cut(s) 302, 853
BsiSI CCGG 2 cut(s) 192, 500
BslI CCNNNNNNNGG 2 cut(s) 499, 861
BsmAI GTCTC 3 cut(s) 341, 428, 687
Bso31I GGTCTC 1 cut(s) 341
Bsp143I GATC 6 cut(s) 126, 622, 646, 664, 715, 736
Bsp19I CCATGG 1 cut(s) 457
BspACI CCGC 2 cut(s) 87, 779
BspCNI CTCAG 1 cut(s) 396
BspHI TCATGA 1 cut(s) 649
BspLI GGNNCC 2 cut(s) 201, 228
BspMAI CTGCAG 1 cut(s) 320
BspPI GGATC 1 cut(s) 672
BspTNI GGTCTC 1 cut(s) 341
BsrDI GCAATG 1 cut(s) 298
BsrI ACTGG 2 cut(s) 525, 694
BssECI CCNNGG 3 cut(s) 203, 222, 457
BssMI GATC 6 cut(s) 126, 622, 646, 664, 715, 736
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 3 cut(s) 203, 222, 457
Bst2UI CCWGG 3 cut(s) 47, 248, 357
Bst4CI ACNGT 4 cut(s) 60, 380, 775, 815
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 850
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 404
BstDSI CCRYGG 1 cut(s) 457
BstF5I GGATG 4 cut(s) 159, 201, 370, 709
BstH2I RGCGCY 1 cut(s) 310
BstHHI GCGC 1 cut(s) 309
BstKTI GATC 6 cut(s) 129, 625, 649, 667, 718, 739
BstMAI GTCTC 3 cut(s) 341, 428, 687
BstMBI GATC 6 cut(s) 126, 622, 646, 664, 715, 736
BstMWI GCNNNNNNNGC 2 cut(s) 315, 850
BstNI CCWGG 3 cut(s) 47, 248, 357
BstSCI CCNGG 4 cut(s) 45, 191, 246, 355
BstSFI CTRYAG 4 cut(s) 56, 316, 755, 771
BstV1I GCAGC 2 cut(s) 302, 853
BstV2I GAAGAC 2 cut(s) 6, 569
BtgI CCRYGG 1 cut(s) 457
BtsCI GGATG 4 cut(s) 159, 201, 370, 709
BtsIMutI CAGTG 3 cut(s) 65, 687, 780
Cac8I GCNNGC 1 cut(s) 159
CaiI CAGNNNCTG 1 cut(s) 813
CciI TCATGA 1 cut(s) 649
CfoI GCGC 1 cut(s) 309
Csp6I GTAC 2 cut(s) 481, 514
CspCI CAANNNNNGTGG 2 cut(s) 676, 711
CviAII CATG 5 cut(s) 18, 140, 339, 458, 650
CviQI GTAC 2 cut(s) 481, 514
DdeI CTNAG 1 cut(s) 404
DpnI GATC 6 cut(s) 128, 624, 648, 666, 717, 738
DpnII GATC 6 cut(s) 126, 622, 646, 664, 715, 736
DraIII CACNNNGTG 1 cut(s) 641
DriI GACNNNNNGTC 1 cut(s) 524
Eam1105I GACNNNNNGTC 1 cut(s) 524
Eco130I CCWWGG 3 cut(s) 203, 222, 457
Eco31I GGTCTC 1 cut(s) 341
Eco32I GATATC 1 cut(s) 178
Eco47III AGCGCT 1 cut(s) 308
EcoRI GAATTC 1 cut(s) 237
EcoRII CCWGG 3 cut(s) 45, 246, 355
EcoRV GATATC 1 cut(s) 178
EcoT14I CCWWGG 3 cut(s) 203, 222, 457
ErhI CCWWGG 3 cut(s) 203, 222, 457
FaeI CATG 5 cut(s) 21, 143, 342, 461, 653
FatI CATG 5 cut(s) 17, 139, 338, 457, 649
FauI CCCGC 1 cut(s) 94
FbaI TGATCA 3 cut(s) 646, 715, 736
FblI GTMKAC 1 cut(s) 375
Fnu4HI GCNGC 3 cut(s) 316, 779, 842
FokI GGATG 4 cut(s) 166, 208, 377, 716
Fsp4HI GCNGC 3 cut(s) 316, 779, 842
FspBI CTAG 1 cut(s) 30
GlaI GCGC 1 cut(s) 308
GluI GCNGC 3 cut(s) 316, 779, 842
GsuI CTGGAG 1 cut(s) 68
HaeII RGCGCY 1 cut(s) 310
HapII CCGG 2 cut(s) 192, 500
HhaI GCGC 1 cut(s) 309
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 21, 143, 342, 461, 653
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 4 cut(s) 188, 218, 273, 580
HpaII CCGG 2 cut(s) 192, 500
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 2 cut(s) 376, 483
Hpy188I TCNGA 3 cut(s) 126, 236, 574
Hpy188III TCNNGA 5 cut(s) 73, 167, 277, 595, 650
Hpy8I GTNNAC 2 cut(s) 376, 483
Hpy99I CGWCG 1 cut(s) 380
HpyCH4III ACNGT 4 cut(s) 60, 380, 775, 815
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 2 cut(s) 157, 318
HpyF10VI GCNNNNNNNGC 2 cut(s) 315, 850
HpyF3I CTNAG 1 cut(s) 404
HpySE526I ACGT 1 cut(s) 131
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 21, 143, 342, 461, 653
HspAI GCGC 1 cut(s) 307
Ksp22I TGATCA 3 cut(s) 646, 715, 736
Kzo9I GATC 6 cut(s) 126, 622, 646, 664, 715, 736
LmnI GCTCC 5 cut(s) 52, 199, 226, 545, 838
Lsp1109I GCAGC 2 cut(s) 302, 853
LweI GCATC 1 cut(s) 144
MaeI CTAG 1 cut(s) 30
MaeII ACGT 1 cut(s) 131
MaeIII GTNAC 2 cut(s) 411, 809
MalI GATC 6 cut(s) 128, 624, 648, 666, 717, 738
MboI GATC 6 cut(s) 126, 622, 646, 664, 715, 736
MboII GAAGA 2 cut(s) 6, 574
MluCI AATT 3 cut(s) 98, 237, 281
MlyI GAGTC 1 cut(s) 282
MseI TTAA 1 cut(s) 470
MslI CAYNNNNRTG 2 cut(s) 459, 773
MspI CCGG 2 cut(s) 192, 500
MspR9I CCNGG 4 cut(s) 47, 193, 248, 357
MvaI CCWGG 3 cut(s) 47, 248, 357
MwoI GCNNNNNNNGC 2 cut(s) 315, 850
NciI CCSGG 1 cut(s) 193
NcoI CCATGG 1 cut(s) 457
NdeII GATC 6 cut(s) 126, 622, 646, 664, 715, 736
NlaIII CATG 5 cut(s) 21, 143, 342, 461, 653
NlaIV GGNNCC 2 cut(s) 201, 228
OliI CACNNNNGTG 2 cut(s) 459, 773
PagI TCATGA 1 cut(s) 649
PfeI GAWTC 3 cut(s) 188, 218, 580
PfoI TCCNGGA 1 cut(s) 191
PkrI GCNGC 3 cut(s) 317, 780, 843
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
Psp6I CCWGG 3 cut(s) 45, 246, 355
PspGI CCWGG 3 cut(s) 45, 246, 355
PspN4I GGNNCC 2 cut(s) 201, 228
PstI CTGCAG 1 cut(s) 320
PstNI CAGNNNCTG 1 cut(s) 813
RsaI GTAC 2 cut(s) 482, 515
RsaNI GTAC 2 cut(s) 481, 514
RseI CAYNNNNRTG 2 cut(s) 459, 773
SalI GTCGAC 1 cut(s) 374
SaqAI TTAA 1 cut(s) 470
SatI GCNGC 3 cut(s) 316, 779, 842
Sau3AI GATC 6 cut(s) 126, 622, 646, 664, 715, 736
SchI GAGTC 1 cut(s) 282
ScrFI CCNGG 4 cut(s) 47, 193, 248, 357
SetI ASST 7 cut(s) 57, 134, 405, 590, 675, 735, 802
SfaNI GCATC 1 cut(s) 144
SfcI CTRYAG 4 cut(s) 56, 316, 755, 771
SmiMI CAYNNNNRTG 2 cut(s) 459, 773
Sse9I AATT 3 cut(s) 98, 237, 281
SsiI CCGC 2 cut(s) 87, 779
SspMI CTAG 1 cut(s) 30
StyD4I CCNGG 4 cut(s) 45, 191, 246, 355
StyI CCWWGG 3 cut(s) 203, 222, 457
TaaI ACNGT 4 cut(s) 60, 380, 775, 815
TaiI ACGT 1 cut(s) 134
TaqI TCGA 1 cut(s) 375
TaqII GACCGA 1 cut(s) 365
TasI AATT 3 cut(s) 98, 237, 281
TatI WGTACW 1 cut(s) 480
TauI GCSGC 1 cut(s) 781
TfiI GAWTC 3 cut(s) 188, 218, 580
Tru1I TTAA 1 cut(s) 470
Tru9I TTAA 1 cut(s) 470
TscAI CASTG 3 cut(s) 65, 694, 780
TseI GCWGC 2 cut(s) 315, 841
TspDTI ATGAA 1 cut(s) 6
TspRI CASTG 3 cut(s) 65, 694, 780
XapI RAATTY 1 cut(s) 237
XmiI GTMKAC 1 cut(s) 375
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.