Rroxscaffold_3G00221380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000636
Physical Location & Seq
Forward (+)
4185196 .. 4187170
1975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00221380.1

Sequence Viewer

Length: 615 bp
ATGGCGAGACAGGCTTACCACCTTGGGAGATATGGAGGATATACCAGCAATTCAAGTTTCCTCACCTGGATTTTCTCTACTTCTTCTCCTGGCCAAGAAGGTGAACCCCAACAAATCTCGCAACTCTTGCACGGTTGGCTCGATGGAGGAACATGGAGTGAGGCCGAAGTGCTAGGCTTGTGTATATCGGTGGAAGTGAAGAGGCGTTTGGGAAACCCGTGTGTAGCTACGCCTTTGGACAAAGCCTTTGAGCATCATGCTGCTTGGTTGACGGAGGAGTACACCATTAATCAAGCACCGGACTTGGCACTGTGCAGACTTAAAGTGAATGATAAAGGAGGAGGAAGAAACAAGAGGAAGTTTGTTGCCGAGAAGAATGAGGATCAGAATGTGAGAAACAAAAAGTGTTTCAAAAACCGAAAAGTTGAACCGAGAAGAGATCAAACTAGTTTCTTGGATCCTGAGGAGCAACAAGAAGGCAGTGCTTCCTTTGCTACTAATACTTCACAGCTAATTCTCTCTCCTATCATCATGAAGATGATCAAGTGGTTCAGGTGGTTCCGGAGAACAATTATGATTATGACGAGCTGCAGCAGATCCTCATTGTATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

23.28

Weight (kDa)

9.26

Isoelectric Point (pI)

52.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 561
AclWI GGATC 4 cut(s) 390, 452, 465, 591
AcoI YGGCCR 1 cut(s) 91
AfaI GTAC 1 cut(s) 281
AgsI TTSAA 3 cut(s) 54, 412, 428
AhlI ACTAGT 1 cut(s) 446
AjnI CCWGG 2 cut(s) 65, 88
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AluBI AGCT 3 cut(s) 227, 511, 588
AluI AGCT 3 cut(s) 227, 511, 588
AlwI GGATC 4 cut(s) 390, 452, 465, 591
Aor13HI TCCGGA 1 cut(s) 561
AoxI GGCC 2 cut(s) 91, 162
ApeKI GCWGC 3 cut(s) 260, 588, 591
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
AseI ATTAAT 1 cut(s) 288
AsuHPI GGTGA 2 cut(s) 55, 113
AxyI CCTNAGG 1 cut(s) 462
BalI TGGCCA 1 cut(s) 93
BamHI GGATCC 1 cut(s) 457
BbvI GCAGC 3 cut(s) 247, 575, 603
BccI CCATC 1 cut(s) 137
BciT130I CCWGG 2 cut(s) 67, 90
BclI TGATCA 1 cut(s) 540
BcuI ACTAGT 1 cut(s) 446
BfaI CTAG 2 cut(s) 173, 447
BfmI CTRYAG 1 cut(s) 589
BisI GCNGC 3 cut(s) 261, 589, 592
BlsI GCNGC 3 cut(s) 262, 590, 593
Bme1390I CCNGG 2 cut(s) 67, 90
BmiI GGNNCC 2 cut(s) 459, 560
BmrFI CCNGG 2 cut(s) 67, 90
BmsI GCATC 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 22
BsaWI WCCGGW 2 cut(s) 298, 561
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bse21I CCTNAGG 1 cut(s) 462
BseAI TCCGGA 1 cut(s) 561
BseBI CCWGG 2 cut(s) 67, 90
BseDI CCNNGG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 453
BseRI GAGGAG 3 cut(s) 290, 354, 479
BseXI GCAGC 3 cut(s) 247, 575, 603
BsgI GTGCAG 1 cut(s) 334
BshFI GGCC 2 cut(s) 93, 164
BsiSI CCGG 2 cut(s) 299, 562
BsnI GGCC 2 cut(s) 93, 164
Bsp13I TCCGGA 1 cut(s) 561
Bsp143I GATC 5 cut(s) 382, 439, 457, 540, 596
BspANI GGCC 2 cut(s) 93, 164
BspCNI CTCAG 1 cut(s) 454
BspEI TCCGGA 1 cut(s) 561
BspHI TCATGA 1 cut(s) 531
BspLI GGNNCC 2 cut(s) 459, 560
BspMAI CTGCAG 1 cut(s) 593
BspPI GGATC 4 cut(s) 390, 452, 465, 591
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 5 cut(s) 382, 439, 457, 540, 596
BssT1I CCWWGG 1 cut(s) 22
Bst2UI CCWGG 2 cut(s) 67, 90
Bst4CI ACNGT 2 cut(s) 134, 312
Bst6I CTCTTC 2 cut(s) 194, 430
BstAPI GCANNNNNTGC 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 462
BstKTI GATC 5 cut(s) 385, 442, 460, 543, 599
BstMBI GATC 5 cut(s) 382, 439, 457, 540, 596
BstMWI GCNNNNNNNGC 4 cut(s) 11, 127, 136, 491
BstNI CCWGG 2 cut(s) 67, 90
BstSCI CCNGG 2 cut(s) 65, 88
BstSFI CTRYAG 1 cut(s) 589
BstV1I GCAGC 3 cut(s) 247, 575, 603
BstX2I RGATCY 2 cut(s) 457, 596
BstYI RGATCY 2 cut(s) 457, 596
Bsu36I CCTNAGG 1 cut(s) 462
BsuRI GGCC 2 cut(s) 93, 164
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 2 cut(s) 308, 487
CciI TCATGA 1 cut(s) 531
Csp6I GTAC 1 cut(s) 280
CviAII CATG 3 cut(s) 153, 257, 532
CviJI RGCY 9 cut(s) 14, 93, 139, 164, 177, 227, 245, 511, 588
CviKI_1 RGCY 9 cut(s) 14, 93, 139, 164, 177, 227, 245, 511, 588
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 1 cut(s) 462
DpnI GATC 5 cut(s) 384, 441, 459, 542, 598
DpnII GATC 5 cut(s) 382, 439, 457, 540, 596
EaeI YGGCCR 1 cut(s) 91
Eam1104I CTCTTC 2 cut(s) 194, 430
EarI CTCTTC 2 cut(s) 194, 430
Eco130I CCWWGG 1 cut(s) 22
Eco81I CCTNAGG 1 cut(s) 462
EcoRII CCWGG 2 cut(s) 65, 88
EcoT14I CCWWGG 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 3 cut(s) 156, 260, 535
FaiI YATR 9 cut(s) 33, 42, 154, 185, 258, 533, 575, 581, 609
FatI CATG 3 cut(s) 152, 256, 531
FbaI TGATCA 1 cut(s) 540
Fnu4HI GCNGC 3 cut(s) 261, 589, 592
Fsp4HI GCNGC 3 cut(s) 261, 589, 592
FspBI CTAG 2 cut(s) 173, 447
GluI GCNGC 3 cut(s) 261, 589, 592
HaeIII GGCC 2 cut(s) 93, 164
HapII CCGG 2 cut(s) 299, 562
Hin1II CATG 3 cut(s) 156, 260, 535
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HpaII CCGG 2 cut(s) 299, 562
HphI GGTGA 2 cut(s) 55, 113
Hpy166II GTNNAC 3 cut(s) 104, 270, 282
Hpy188I TCNGA 1 cut(s) 387
Hpy188III TCNNGA 3 cut(s) 461, 532, 562
Hpy8I GTNNAC 3 cut(s) 104, 270, 282
HpyAV CCTTC 2 cut(s) 92, 470
HpyCH4III ACNGT 2 cut(s) 134, 312
HpyCH4V TGCA 3 cut(s) 130, 315, 591
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 127, 136, 491
HpyF3I CTNAG 1 cut(s) 462
Hsp92II CATG 3 cut(s) 156, 260, 535
Kpn2I TCCGGA 1 cut(s) 561
Ksp22I TGATCA 1 cut(s) 540
Kzo9I GATC 5 cut(s) 382, 439, 457, 540, 596
LmnI GCTCC 1 cut(s) 466
LpnPI CCDG 9 cut(s) 52, 58, 75, 79, 102, 312, 474, 538, 575
Lsp1109I GCAGC 3 cut(s) 247, 575, 603
LweI GCATC 1 cut(s) 262
MaeI CTAG 2 cut(s) 173, 447
MalI GATC 5 cut(s) 384, 441, 459, 542, 598
MboI GATC 5 cut(s) 382, 439, 457, 540, 596
MboII GAAGA 6 cut(s) 75, 211, 357, 385, 447, 547
MflI RGATCY 2 cut(s) 457, 596
MlsI TGGCCA 1 cut(s) 93
MluCI AATT 3 cut(s) 49, 513, 570
MluNI TGGCCA 1 cut(s) 93
Mox20I TGGCCA 1 cut(s) 93
MroI TCCGGA 1 cut(s) 561
MscI TGGCCA 1 cut(s) 93
MseI TTAA 2 cut(s) 288, 321
MslI CAYNNNNRTG 1 cut(s) 536
Msp20I TGGCCA 1 cut(s) 93
MspI CCGG 2 cut(s) 299, 562
MspR9I CCNGG 2 cut(s) 67, 90
MvaI CCWGG 2 cut(s) 67, 90
MwoI GCNNNNNNNGC 4 cut(s) 11, 127, 136, 491
NdeII GATC 5 cut(s) 382, 439, 457, 540, 596
NlaIII CATG 3 cut(s) 156, 260, 535
NlaIV GGNNCC 2 cut(s) 459, 560
NmeAIII GCCGAG 1 cut(s) 394
PagI TCATGA 1 cut(s) 531
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PkrI GCNGC 3 cut(s) 262, 590, 593
PshBI ATTAAT 1 cut(s) 288
Psp6I CCWGG 2 cut(s) 65, 88
PspGI CCWGG 2 cut(s) 65, 88
PspN4I GGNNCC 2 cut(s) 459, 560
PstI CTGCAG 1 cut(s) 593
PsuI RGATCY 2 cut(s) 457, 596
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 1 cut(s) 536
SaqAI TTAA 2 cut(s) 288, 321
SatI GCNGC 3 cut(s) 261, 589, 592
Sau3AI GATC 5 cut(s) 382, 439, 457, 540, 596
ScrFI CCNGG 2 cut(s) 67, 90
SetI ASST 7 cut(s) 24, 68, 103, 229, 513, 557, 590
SfaNI GCATC 1 cut(s) 262
SfcI CTRYAG 1 cut(s) 589
SmiMI CAYNNNNRTG 1 cut(s) 536
SpeI ACTAGT 1 cut(s) 446
Sse9I AATT 3 cut(s) 49, 513, 570
SspMI CTAG 2 cut(s) 173, 447
StyD4I CCNGG 2 cut(s) 65, 88
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 2 cut(s) 134, 312
TaqI TCGA 1 cut(s) 141
TasI AATT 3 cut(s) 49, 513, 570
TatI WGTACW 1 cut(s) 279
Tru1I TTAA 2 cut(s) 288, 321
Tru9I TTAA 2 cut(s) 288, 321
TscAI CASTG 2 cut(s) 315, 487
TseI GCWGC 3 cut(s) 260, 588, 591
TspDTI ATGAA 1 cut(s) 548
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 2 cut(s) 315, 487
VspI ATTAAT 1 cut(s) 288
XspI CTAG 2 cut(s) 173, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.