Rorug07G0324500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000636
Physical Location & Seq
Forward (+)
33672549 .. 33677948
5400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0324500.1

Sequence Viewer

Length: 1089 bp
ATGGACATGGAAGCACAGAGGTTTTTATGGGAAGGAGCAATTCCTTTGCAGATTCATCTCCACGAATCCGAAGTCACGACTCTTCCTTCTCCCCCGCCCGCCCTGATCTTAGCTCCTCGGCTAGGGTACCTACCGTTGTTGGCCTCGCATCTAAAGCCTTACTTCAGCACCGCACTTCCTCCTGGTGTTGACACTATTTGGTTCGACTACAAAGGCTTGCCCTTGAAATGGTATATACCAACAGGAGTTCTTTTTGATCTTCTTTGTGCAGAACCAGAGAGACCTTGGAATTTAACGGTTCATTTTAGAGGATATCCAGGAAACATATTGATCCCTTGTGAAGGTGAAGATAGCATAAAGTGGAACTTTATTAACTCATTGAAAGAGGCAGCATATATAATCAATGGAAACTGCAAGAATGTGATGAACATGTCTCAACCTGATCAGGTGGAGCTCTGGCGCTCTGTCTTAAATGGTAATTTGGAAGCCTACCGACGGGTATCTTCTAAACTTAAGCTTGAAGCCGTTGGGGAAATGAACTCGAGCTCGCCAAGATCCCGATCAAGTATGGGTGAAGTTGATGTTTCTGGGCAGGCGAAGCCAGGCCGAGTTCCAGTTCGGTTATATGTTTGGAATGTCAGTGAGGACTTTGATGACTTAGAAGATGCACCACCGATTGATAGTTGGGACAAAGTTTCTTACATAAACCGGCCTGTCGAGATACAAGAAGGTAGATGCTTCACTTTACATGATGCAGTGAAGAGCCTTCTGCCAGACTATTTTGTGGTCAAATCCTTGGGCACTGCTGAGTCACTGACAGTAGTTGGTGATGACAAGCAAAGAGTTTCATCCGAAGATGCAAGCGATGATAAAAAAGCCGAAGAGGAAGTAGAAACTTCATCTGATGACCATGTAAAGGCTAGTTACGAACATGAAGAGCCCGAAATCAAGCTGGTTCGTATACAAGGTATTGAACCAAAACTGGAGATACCATTTTCTTGGGTGGCAAACAACTTAATGCACCCCGAGTACTTTCTTCATATCTCTGTATATTTGAAAGTACCACAAGTCAATAATACTATGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

362

Amino Acids

40.94

Weight (kDa)

4.91

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATG5_UblA PF20638 9 - 102 4.7e-29 Autophagy protein ATG5, UblA domain
ATG5_HBR PF20637 116 - 172 1.7e-23 Autophagy protein ATG5, alpha-helical bundle region
ATG5_UblB PF04106 203 - 350 3.9e-18 Autophagy protein ATG5, UblB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 126
AccB1I GGYRCC 1 cut(s) 126
AccI GTMKAC 1 cut(s) 961
AciI CCGC 3 cut(s) 95, 99, 171
AclWI GGATC 2 cut(s) 325, 549
AcsI RAATTY 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 148
AfaI GTAC 3 cut(s) 128, 1031, 1062
AfiI CCNNNNNNNGG 5 cut(s) 122, 228, 341, 495, 916
AflII CTTAAG 1 cut(s) 512
AflIII ACRYGT 1 cut(s) 429
AgsI TTSAA 5 cut(s) 226, 382, 521, 974, 1057
AjnI CCWGG 3 cut(s) 181, 316, 601
AluBI AGCT 5 cut(s) 113, 454, 517, 546, 952
AluI AGCT 5 cut(s) 113, 454, 517, 546, 952
Alw21I GWGCWC 2 cut(s) 456, 548
Alw26I GTCTC 2 cut(s) 274, 438
AlwI GGATC 2 cut(s) 325, 549
Ama87I CYCGRG 2 cut(s) 541, 1025
AoxI GGCC 3 cut(s) 141, 604, 710
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 1 cut(s) 289
ArsI GACNNNNNNTTYG 2 cut(s) 57, 89
Asp718I GGTACC 1 cut(s) 126
AspLEI GCGC 1 cut(s) 462
AsuHPI GGTGA 3 cut(s) 356, 584, 839
AvaI CYCGRG 2 cut(s) 541, 1025
BaeGI GKGCMC 1 cut(s) 803
BanI GGYRCC 1 cut(s) 126
BanII GRGCYC 3 cut(s) 456, 548, 942
Bbv12I GWGCWC 2 cut(s) 456, 548
BbvI GCAGC 1 cut(s) 401
BceAI ACGGC 1 cut(s) 509
BciT130I CCWGG 3 cut(s) 183, 318, 603
BclI TGATCA 1 cut(s) 442
BcoDI GTCTC 2 cut(s) 274, 438
BfaI CTAG 2 cut(s) 122, 921
BfoI RGCGCY 1 cut(s) 463
BfrI CTTAAG 1 cut(s) 512
BisI GCNGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 391
BmcAI AGTACT 1 cut(s) 1031
Bme1390I CCNGG 3 cut(s) 183, 318, 603
BmeT110I CYCGRG 2 cut(s) 541, 1025
BmiI GGNNCC 1 cut(s) 128
BmrFI CCNGG 3 cut(s) 183, 318, 603
BmsI GCATC 5 cut(s) 157, 655, 725, 742, 847
BpmI CTGGAG 1 cut(s) 1004
BsaBI GATNNNNATC 1 cut(s) 559
BsaI GGTCTC 1 cut(s) 274
BsaJI CCNNGG 3 cut(s) 116, 284, 795
Bsc4I CCNNNNNNNGG 5 cut(s) 122, 228, 341, 495, 916
Bse118I RCCGGY 1 cut(s) 708
Bse1I ACTGG 2 cut(s) 614, 987
Bse8I GATNNNNATC 1 cut(s) 559
BseBI CCWGG 3 cut(s) 183, 318, 603
BseDI CCNNGG 3 cut(s) 116, 284, 795
BseGI GGATG 1 cut(s) 848
BseJI GATNNNNATC 1 cut(s) 559
BseLI CCNNNNNNNGG 5 cut(s) 122, 228, 341, 495, 916
BseMII CTCAG 1 cut(s) 798
BseNI ACTGG 2 cut(s) 614, 987
BseRI GAGGAG 1 cut(s) 105
BseSI GKGCMC 1 cut(s) 803
BseXI GCAGC 1 cut(s) 401
BsgI GTGCAG 1 cut(s) 288
BshFI GGCC 3 cut(s) 143, 606, 712
BshNI GGYRCC 1 cut(s) 126
BsiHKAI GWGCWC 2 cut(s) 456, 548
BsiHKCI CYCGRG 2 cut(s) 541, 1025
BsiSI CCGG 1 cut(s) 709
BslFI GGGAC 1 cut(s) 701
BslI CCNNNNNNNGG 5 cut(s) 122, 228, 341, 495, 916
BsmAI GTCTC 2 cut(s) 274, 438
BsmFI GGGAC 1 cut(s) 701
BsnI GGCC 3 cut(s) 143, 606, 712
Bso31I GGTCTC 1 cut(s) 274
BsoBI CYCGRG 2 cut(s) 541, 1025
Bsp1286I GDGCHC 4 cut(s) 456, 548, 803, 942
Bsp143I GATC 6 cut(s) 105, 256, 330, 442, 554, 560
BspACI CCGC 3 cut(s) 95, 99, 171
BspANI GGCC 3 cut(s) 143, 606, 712
BspCNI CTCAG 1 cut(s) 799
BspLI GGNNCC 1 cut(s) 128
BspPI GGATC 2 cut(s) 325, 549
BspQI GCTCTTC 2 cut(s) 755, 930
BspT107I GGYRCC 1 cut(s) 126
BspTI CTTAAG 1 cut(s) 512
BspTNI GGTCTC 1 cut(s) 274
BsrFI RCCGGY 1 cut(s) 708
BsrI ACTGG 2 cut(s) 614, 987
BssAI RCCGGY 1 cut(s) 708
BssECI CCNNGG 3 cut(s) 116, 284, 795
BssMI GATC 6 cut(s) 105, 256, 330, 442, 554, 560
BssNAI GTATAC 1 cut(s) 962
BssT1I CCWWGG 2 cut(s) 284, 795
Bst1107I GTATAC 1 cut(s) 962
Bst2UI CCWGG 3 cut(s) 183, 318, 603
Bst4CI ACNGT 3 cut(s) 135, 298, 820
Bst6I CTCTTC 4 cut(s) 87, 755, 876, 930
BstAFI CTTAAG 1 cut(s) 512
BstC8I GCNNGC 5 cut(s) 99, 218, 548, 594, 862
BstDEI CTNAG 3 cut(s) 109, 658, 807
BstENI CCTNNNNNAGG 2 cut(s) 120, 339
BstF5I GGATG 1 cut(s) 848
BstH2I RGCGCY 1 cut(s) 463
BstHHI GCGC 1 cut(s) 462
BstKTI GATC 6 cut(s) 108, 259, 333, 445, 557, 563
BstMAI GTCTC 2 cut(s) 274, 438
BstMBI GATC 6 cut(s) 105, 256, 330, 442, 554, 560
BstMWI GCNNNNNNNGC 2 cut(s) 154, 598
BstNI CCWGG 3 cut(s) 183, 318, 603
BstNSI RCATGY 1 cut(s) 433
BstSCI CCNGG 3 cut(s) 181, 316, 601
BstSLI GKGCMC 1 cut(s) 803
BstV1I GCAGC 1 cut(s) 401
BstX2I RGATCY 1 cut(s) 554
BstXI CCANNNNNNTGG 1 cut(s) 999
BstYI RGATCY 1 cut(s) 554
BstZ17I GTATAC 1 cut(s) 962
BsuRI GGCC 3 cut(s) 143, 606, 712
BtgZI GCGATG 1 cut(s) 879
BtsCI GGATG 1 cut(s) 848
BtsI GCAGTG 2 cut(s) 762, 801
BtsIMutI CAGTG 4 cut(s) 646, 762, 801, 812
Cac8I GCNNGC 5 cut(s) 99, 218, 548, 594, 862
CfoI GCGC 1 cut(s) 462
Cfr10I RCCGGY 1 cut(s) 708
Csp6I GTAC 3 cut(s) 127, 1030, 1061
CviAII CATG 5 cut(s) 7, 430, 749, 911, 932
CviQI GTAC 3 cut(s) 127, 1030, 1061
DdeI CTNAG 3 cut(s) 109, 658, 807
DpnI GATC 6 cut(s) 107, 258, 332, 444, 556, 562
DpnII GATC 6 cut(s) 105, 256, 330, 442, 554, 560
Eam1104I CTCTTC 4 cut(s) 87, 755, 876, 930
EarI CTCTTC 4 cut(s) 87, 755, 876, 930
Ecl136II GAGCTC 2 cut(s) 454, 546
Eco130I CCWWGG 2 cut(s) 284, 795
Eco24I GRGCYC 3 cut(s) 456, 548, 942
Eco31I GGTCTC 1 cut(s) 274
Eco32I GATATC 1 cut(s) 314
Eco53kI GAGCTC 2 cut(s) 454, 546
Eco57I CTGAAG 1 cut(s) 148
Eco88I CYCGRG 2 cut(s) 541, 1025
EcoICRI GAGCTC 2 cut(s) 454, 546
EcoNI CCTNNNNNAGG 2 cut(s) 120, 339
EcoRII CCWGG 3 cut(s) 181, 316, 601
EcoRV GATATC 1 cut(s) 314
EcoT14I CCWWGG 2 cut(s) 284, 795
EcoT38I GRGCYC 3 cut(s) 456, 548, 942
ErhI CCWWGG 2 cut(s) 284, 795
FaeI CATG 5 cut(s) 10, 433, 752, 914, 935
FalI AAGNNNNNCTT 4 cut(s) 146, 178, 350, 382
FaqI GGGAC 1 cut(s) 701
FatI CATG 5 cut(s) 6, 429, 748, 910, 931
FauI CCCGC 2 cut(s) 102, 106
FbaI TGATCA 1 cut(s) 442
FblI GTMKAC 1 cut(s) 961
Fnu4HI GCNGC 1 cut(s) 390
FokI GGATG 1 cut(s) 835
FriOI GRGCYC 3 cut(s) 456, 548, 942
Fsp4HI GCNGC 1 cut(s) 390
FspBI CTAG 2 cut(s) 122, 921
GlaI GCGC 1 cut(s) 461
GluI GCNGC 1 cut(s) 390
GsuI CTGGAG 1 cut(s) 1004
HaeII RGCGCY 1 cut(s) 463
HaeIII GGCC 3 cut(s) 143, 606, 712
HapII CCGG 1 cut(s) 709
HhaI GCGC 1 cut(s) 462
Hin1II CATG 5 cut(s) 10, 433, 752, 914, 935
Hin6I GCGC 1 cut(s) 460
HinP1I GCGC 1 cut(s) 460
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 4 cut(s) 52, 65, 79, 809
HpaII CCGG 1 cut(s) 709
HphI GGTGA 3 cut(s) 356, 584, 839
Hpy166II GTNNAC 2 cut(s) 190, 962
Hpy188I TCNGA 3 cut(s) 70, 853, 904
Hpy188III TCNNGA 3 cut(s) 76, 558, 718
Hpy8I GTNNAC 2 cut(s) 190, 962
Hpy99I CGWCG 1 cut(s) 498
HpyAV CCTTC 5 cut(s) 26, 96, 335, 722, 776
HpyCH4III ACNGT 3 cut(s) 135, 298, 820
HpyCH4V TGCA 7 cut(s) 49, 269, 414, 668, 755, 860, 1021
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 598
HpyF3I CTNAG 3 cut(s) 109, 658, 807
Hsp92II CATG 5 cut(s) 10, 433, 752, 914, 935
HspAI GCGC 1 cut(s) 460
KpnI GGTACC 1 cut(s) 130
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 6 cut(s) 105, 256, 330, 442, 554, 560
LguI GCTCTTC 2 cut(s) 755, 930
LmnI GCTCC 3 cut(s) 35, 118, 451
Lsp1109I GCAGC 1 cut(s) 401
LweI GCATC 5 cut(s) 157, 655, 725, 742, 847
MaeI CTAG 2 cut(s) 122, 921
MaeIII GTNAC 3 cut(s) 73, 810, 923
MalI GATC 6 cut(s) 107, 258, 332, 444, 556, 562
MboI GATC 6 cut(s) 105, 256, 330, 442, 554, 560
MflI RGATCY 1 cut(s) 554
MhlI GDGCHC 4 cut(s) 456, 548, 803, 942
MluCI AATT 3 cut(s) 39, 289, 478
MlyI GAGTC 2 cut(s) 73, 818
MnlI CCTC 8 cut(s) 12, 126, 154, 189, 302, 379, 637, 877
MseI TTAA 5 cut(s) 293, 372, 470, 513, 1016
MspCI CTTAAG 1 cut(s) 512
MspI CCGG 1 cut(s) 709
MspR9I CCNGG 3 cut(s) 183, 318, 603
MvaI CCWGG 3 cut(s) 183, 318, 603
MwoI GCNNNNNNNGC 2 cut(s) 154, 598
NdeII GATC 6 cut(s) 105, 256, 330, 442, 554, 560
NlaIII CATG 5 cut(s) 10, 433, 752, 914, 935
NlaIV GGNNCC 1 cut(s) 128
NmeAIII GCCGAG 2 cut(s) 97, 632
NmuCI GTSAC 2 cut(s) 73, 810
NspI RCATGY 1 cut(s) 433
PaeR7I CTCGAG 1 cut(s) 541
PciI ACATGT 1 cut(s) 429
PciSI GCTCTTC 2 cut(s) 755, 930
PfeI GAWTC 2 cut(s) 52, 65
PfoI TCCNGGA 1 cut(s) 316
PkrI GCNGC 1 cut(s) 391
PleI GAGTC 2 cut(s) 73, 817
PpsI GAGTC 2 cut(s) 73, 817
PscI ACATGT 1 cut(s) 429
Psp124BI GAGCTC 2 cut(s) 456, 548
Psp6I CCWGG 3 cut(s) 181, 316, 601
PspGI CCWGG 3 cut(s) 181, 316, 601
PspN4I GGNNCC 1 cut(s) 128
PspXI VCTCGAGB 1 cut(s) 541
PsuI RGATCY 1 cut(s) 554
RsaI GTAC 3 cut(s) 128, 1031, 1062
RsaNI GTAC 3 cut(s) 127, 1030, 1061
SacI GAGCTC 2 cut(s) 456, 548
SapI GCTCTTC 2 cut(s) 755, 930
SaqAI TTAA 5 cut(s) 293, 372, 470, 513, 1016
SatI GCNGC 1 cut(s) 390
Sau3AI GATC 6 cut(s) 105, 256, 330, 442, 554, 560
ScaI AGTACT 1 cut(s) 1031
SchI GAGTC 2 cut(s) 73, 818
ScrFI CCNGG 3 cut(s) 183, 318, 603
SduI GDGCHC 4 cut(s) 456, 548, 803, 942
SfaNI GCATC 5 cut(s) 157, 655, 725, 742, 847
Sfr274I CTCGAG 1 cut(s) 541
SlaI CTCGAG 1 cut(s) 541
SmlI CTYRAG 2 cut(s) 512, 541
SmoI CTYRAG 2 cut(s) 512, 541
Sse9I AATT 3 cut(s) 39, 289, 478
SsiI CCGC 3 cut(s) 95, 99, 171
SspMI CTAG 2 cut(s) 122, 921
SstI GAGCTC 2 cut(s) 456, 548
StyD4I CCNGG 3 cut(s) 181, 316, 601
StyI CCWWGG 2 cut(s) 284, 795
TaaI ACNGT 3 cut(s) 135, 298, 820
TaqI TCGA 3 cut(s) 204, 542, 717
TasI AATT 3 cut(s) 39, 289, 478
TatI WGTACW 1 cut(s) 1029
TfiI GAWTC 2 cut(s) 52, 65
Tru1I TTAA 5 cut(s) 293, 372, 470, 513, 1016
Tru9I TTAA 5 cut(s) 293, 372, 470, 513, 1016
TscAI CASTG 4 cut(s) 646, 762, 808, 819
TseFI GTSAC 2 cut(s) 73, 810
TseI GCWGC 1 cut(s) 389
Tsp45I GTSAC 2 cut(s) 73, 810
TspDTI ATGAA 8 cut(s) 44, 290, 440, 551, 837, 888, 948, 1028
TspRI CASTG 4 cut(s) 646, 762, 808, 819
Vha464I CTTAAG 1 cut(s) 512
XagI CCTNNNNNAGG 2 cut(s) 120, 339
XapI RAATTY 1 cut(s) 289
XceI RCATGY 1 cut(s) 433
XcmI CCANNNNNNNNNTGG 1 cut(s) 282
XhoI CTCGAG 1 cut(s) 541
XmiI GTMKAC 1 cut(s) 961
XspI CTAG 2 cut(s) 122, 921
ZrmI AGTACT 1 cut(s) 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.