Rh7BG420800
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000636
Physical Location & Seq
Forward (+)
47922007 .. 47922720
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG420800.1

Sequence Viewer

Length: 564 bp
ATGGCTCTCGTAGATCAATTCATGACTCTGGATCAGCTTGATGTGGGTGTGGTGAAGACATTTCACCCTACTGAAACCGAGTTGGATTTTCTCTACTTCTTCTCCTGGGCCAAGAAGGTGAGCCCCAACAAATCTCGCAACTCTCGCACAGTTGGCTCTGATGGGGGAACATGGAGCGAGACGGAAGCCGTTAGGCTTGTGTATATCAGTGGAAGTGAAGAGGCGTTTGGGAAAGTCAGAAAGTTTCGGTATGAAAAGAACAAGAACAAATCCTTTGAGCATCATGCTGCTTGGTTGATGGAGGAGTACACCATTAATCAAGCACCGAACTTGGCTCTGTGCAGACTAAAAGTGAATGATAAAGGAGGAGGAAGAAACAAGAGGAAGTTTGTTGCTGAGAAGAATGAGGATCAGAATGTGAGAAGCAAAAAGTGTTTCAAAAACCGAAAAGTTGAACCGAGAAGAGATCAAACTAGTTTCATGTGTGAGCAGCAACAAGAAGGCAGTGCTTCCTTTGCTACGTACTACTACTTCACAGCTAATTCTCTCTCCCTATCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

187

Amino Acids

21.59

Weight (kDa)

9.28

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 30 - 104 3.5e-07 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 39, 417
AfaI GTAC 2 cut(s) 308, 524
AgsI TTSAA 2 cut(s) 439, 455
AhlI ACTAGT 1 cut(s) 473
AjnI CCWGG 1 cut(s) 104
AjuI GAANNNNNNNTTGG 2 cut(s) 210, 242
AluBI AGCT 2 cut(s) 37, 539
AluI AGCT 2 cut(s) 37, 539
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 2 cut(s) 39, 417
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 2 cut(s) 287, 490
AseI ATTAAT 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 108
AsuHPI GGTGA 3 cut(s) 56, 64, 130
BanII GRGCYC 1 cut(s) 125
BarI GAAGNNNNNNTAC 2 cut(s) 515, 547
BbsI GAAGAC 1 cut(s) 62
BbvI GCAGC 2 cut(s) 274, 502
BccI CCATC 2 cut(s) 155, 292
BceAI ACGGC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 173
BcuI ACTAGT 1 cut(s) 473
BfaI CTAG 1 cut(s) 474
BisI GCNGC 2 cut(s) 288, 491
BlsI GCNGC 2 cut(s) 289, 492
Bme1390I CCNGG 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 106
BmsI GCATC 1 cut(s) 289
BpiI GAAGAC 1 cut(s) 62
BsaAI YACGTR 1 cut(s) 522
BsaJI CCNNGG 1 cut(s) 105
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
BseBI CCWGG 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 387
BseRI GAGGAG 2 cut(s) 317, 381
BseXI GCAGC 2 cut(s) 274, 502
BsgI GTGCAG 1 cut(s) 361
BshFI GGCC 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 173
BsmBI CGTCTC 1 cut(s) 173
BsnI GGCC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 4 cut(s) 13, 31, 409, 466
BspANI GGCC 1 cut(s) 110
BspCNI CTCAG 1 cut(s) 388
BspHI TCATGA 2 cut(s) 21, 560
BspPI GGATC 2 cut(s) 39, 417
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 4 cut(s) 13, 31, 409, 466
Bst2UI CCWGG 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 2 cut(s) 213, 457
BstBAI YACGTR 1 cut(s) 522
BstDEI CTNAG 1 cut(s) 396
BstKTI GATC 4 cut(s) 16, 34, 412, 469
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 4 cut(s) 13, 31, 409, 466
BstMWI GCNNNNNNNGC 3 cut(s) 144, 153, 515
BstNI CCWGG 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 104
BstSNI TACGTA 1 cut(s) 522
BstV1I GCAGC 2 cut(s) 274, 502
BstV2I GAAGAC 1 cut(s) 62
BsuRI GGCC 1 cut(s) 110
BtsI GCAGTG 1 cut(s) 511
BtsIMutI CAGTG 2 cut(s) 214, 511
CciI TCATGA 2 cut(s) 21, 560
Cfr13I GGNCC 1 cut(s) 108
Csp6I GTAC 2 cut(s) 307, 523
CviAII CATG 5 cut(s) 22, 171, 284, 481, 561
CviJI RGCY 9 cut(s) 5, 37, 110, 123, 156, 188, 196, 335, 539
CviKI_1 RGCY 9 cut(s) 5, 37, 110, 123, 156, 188, 196, 335, 539
CviQI GTAC 2 cut(s) 307, 523
DdeI CTNAG 1 cut(s) 396
DpnI GATC 4 cut(s) 15, 33, 411, 468
DpnII GATC 4 cut(s) 13, 31, 409, 466
Eam1104I CTCTTC 2 cut(s) 213, 457
EarI CTCTTC 2 cut(s) 213, 457
Eco105I TACGTA 1 cut(s) 522
Eco24I GRGCYC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 104
EcoT38I GRGCYC 1 cut(s) 125
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 5 cut(s) 25, 174, 287, 484, 564
FaiI YATR 7 cut(s) 23, 172, 204, 252, 285, 482, 562
FatI CATG 5 cut(s) 21, 170, 283, 480, 560
Fnu4HI GCNGC 2 cut(s) 288, 491
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 2 cut(s) 288, 491
FspBI CTAG 1 cut(s) 474
GluI GCNGC 2 cut(s) 288, 491
HaeIII GGCC 1 cut(s) 110
Hin1II CATG 5 cut(s) 25, 174, 287, 484, 564
HinfI GANTC 1 cut(s) 25
HphI GGTGA 3 cut(s) 56, 64, 130
Hpy166II GTNNAC 1 cut(s) 309
Hpy188I TCNGA 3 cut(s) 160, 239, 414
Hpy188III TCNNGA 3 cut(s) 22, 29, 561
Hpy8I GTNNAC 1 cut(s) 309
HpyAV CCTTC 2 cut(s) 109, 494
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 521
HpyCH4V TGCA 1 cut(s) 342
HpyF10VI GCNNNNNNNGC 3 cut(s) 144, 153, 515
HpyF3I CTNAG 1 cut(s) 396
HpySE526I ACGT 1 cut(s) 521
Hsp92II CATG 5 cut(s) 25, 174, 287, 484, 564
Kzo9I GATC 4 cut(s) 13, 31, 409, 466
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 3 cut(s) 14, 91, 118
Lsp1109I GCAGC 2 cut(s) 274, 502
LweI GCATC 1 cut(s) 289
MaeI CTAG 1 cut(s) 474
MaeII ACGT 1 cut(s) 521
MalI GATC 4 cut(s) 15, 33, 411, 468
MboI GATC 4 cut(s) 13, 31, 409, 466
MboII GAAGA 6 cut(s) 67, 91, 230, 384, 412, 474
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 2 cut(s) 17, 541
MlyI GAGTC 1 cut(s) 19
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 6 cut(s) 214, 295, 359, 362, 375, 400
MseI TTAA 1 cut(s) 315
MspR9I CCNGG 1 cut(s) 106
MvaI CCWGG 1 cut(s) 106
MwoI GCNNNNNNNGC 3 cut(s) 144, 153, 515
NdeII GATC 4 cut(s) 13, 31, 409, 466
NlaIII CATG 5 cut(s) 25, 174, 287, 484, 564
PagI TCATGA 2 cut(s) 21, 560
PkrI GCNGC 2 cut(s) 289, 492
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
Ppu21I YACGTR 1 cut(s) 522
PshBI ATTAAT 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PspPI GGNCC 1 cut(s) 108
RsaI GTAC 2 cut(s) 308, 524
RsaNI GTAC 2 cut(s) 307, 523
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 2 cut(s) 288, 491
Sau3AI GATC 4 cut(s) 13, 31, 409, 466
Sau96I GGNCC 1 cut(s) 108
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 106
SduI GDGCHC 1 cut(s) 125
SetI ASST 4 cut(s) 39, 120, 524, 541
SfaNI GCATC 1 cut(s) 289
SnaBI TACGTA 1 cut(s) 522
SpeI ACTAGT 1 cut(s) 473
Sse9I AATT 2 cut(s) 17, 541
SspMI CTAG 1 cut(s) 474
StyD4I CCNGG 1 cut(s) 104
TaaI ACNGT 1 cut(s) 151
TaiI ACGT 1 cut(s) 524
TasI AATT 2 cut(s) 17, 541
TatI WGTACW 1 cut(s) 306
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 2 cut(s) 214, 511
TseI GCWGC 2 cut(s) 287, 490
TspDTI ATGAA 3 cut(s) 10, 267, 469
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 2 cut(s) 214, 511
VspI ATTAAT 1 cut(s) 315
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.