Rmu_sc0002449.1_g000018
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002449.1
OG0000636
Physical Location & Seq
Forward (+)
63295 .. 66816
3522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002449.1_g000018.1.cds

Sequence Viewer

Length: 1092 bp
atggctctggatcagcttgatgtgggtgtggtgaagacatttcaccctactgaaaccgagttggtgggtttctttctatacaacaacatctccatggcctcaagctcgggcaatcagattcagaccttccctgaaatttgtatatatggcgagacaggcttaccaccttgggagatatggattggctctgatgggagaacatggagcgagacggaagccgttaggcttgtgtatatcagtggaagtgaagaggcgtttgggaaagtcagaaagtttcggtatgaaaagaacaagaacaaagcctttgagcatcatgctgcttggttgatagaggagtacaccattaatcaagcaccggacttggctctgtgcagactaaaagtgaatgataaaggaggaggaagaaacaagaggaagtttgttgctgagaagaatgaggatctgaatgtggtttcggagaacaattacgattatgacgagctgcagcagatcctctttagcgatgatgattgtatggatgagaatcaaatgttctctcccactatcttgtttgatgagaatgacgacatgttgaatgatgcacagcttatggcttctgttgatcaatcaatatctaaagctcaaggagagtccaacaagccaagagtcctgaagattggtagtcggaaactcgagatatcggcgtttactcgattttggaccccaaatcgggttgagcttgccgtcgccgctacaggtagtgccactgcgcaaagcttccactggcagttgtgcaaggtcaaggcgagcacgttggacgtggtccggcgtggattggtggtttgtggagggagatatggccggtggaagttttacggtgatttccggtgtcaagaggaggaccaaacacaactacaacaacaagatcagccctcttcctctcattctcacgagcagcagcagctcatctgtgatgatgatctgatgatttctggccaacatgagtataatattccactcgataacgacttcttatggtctgatgaatttaatggactctttactcatgaagatcagctgggagctctgccatggcgggaaagtgatgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

363

Amino Acids

41.52

Weight (kDa)

4.7

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 750
AciI CCGC 2 cut(s) 729, 1075
AclWI GGATC 3 cut(s) 18, 447, 484
AcoI YGGCCR 2 cut(s) 838, 973
AcsI RAATTY 2 cut(s) 135, 1025
AcuI CTGAAG 1 cut(s) 671
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 2 cut(s) 708, 709
AflIII ACRYGT 1 cut(s) 567
AgsI TTSAA 1 cut(s) 574
AjiI CACGTC 1 cut(s) 799
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
Alw21I GWGCWC 2 cut(s) 791, 1066
Alw26I GTCTC 2 cut(s) 146, 203
AlwI GGATC 3 cut(s) 18, 447, 484
Ama87I CYCGRG 2 cut(s) 106, 671
AoxI GGCC 3 cut(s) 96, 838, 973
ApeKI GCWGC 6 cut(s) 317, 481, 484, 934, 937, 940
ApoI RAATTY 2 cut(s) 135, 1025
AseI ATTAAT 1 cut(s) 345
AspLEI GCGC 1 cut(s) 751
AspS9I GGNCC 3 cut(s) 699, 802, 880
AsuHPI GGTGA 3 cut(s) 35, 43, 869
AvaI CYCGRG 2 cut(s) 106, 671
AvaII GGWCC 3 cut(s) 699, 802, 880
BalI TGGCCA 1 cut(s) 975
BanII GRGCYC 1 cut(s) 1066
BauI CACGAG 1 cut(s) 929
BbsI GAAGAC 1 cut(s) 41
Bbv12I GWGCWC 2 cut(s) 791, 1066
BbvI GCAGC 6 cut(s) 304, 468, 496, 946, 949, 952
BccI CCATC 1 cut(s) 185
BceAI ACGGC 2 cut(s) 203, 707
BclI TGATCA 1 cut(s) 601
BcoDI GTCTC 2 cut(s) 146, 203
BfmI CTRYAG 2 cut(s) 482, 732
BisI GCNGC 7 cut(s) 318, 482, 485, 729, 935, 938, 941
BlsI GCNGC 7 cut(s) 319, 483, 486, 730, 936, 939, 942
Bme18I GGWCC 3 cut(s) 699, 802, 880
BmeT110I CYCGRG 2 cut(s) 106, 671
BmgBI CACGTC 1 cut(s) 799
BmgT120I GGNCC 3 cut(s) 699, 802, 880
BmiI GGNNCC 1 cut(s) 701
BmsI GCATC 2 cut(s) 319, 568
BpiI GAAGAC 1 cut(s) 41
BpuEI CTTGAG 2 cut(s) 85, 606
BsaBI GATNNNNATC 2 cut(s) 522, 957
BsaJI CCNNGG 3 cut(s) 93, 167, 1070
BsaWI WCCGGW 2 cut(s) 355, 864
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 2 cut(s) 708, 709
Bse118I RCCGGY 1 cut(s) 840
Bse1I ACTGG 1 cut(s) 767
Bse8I GATNNNNATC 2 cut(s) 522, 957
BseDI CCNNGG 3 cut(s) 93, 167, 1070
BseGI GGATG 1 cut(s) 523
BseJI GATNNNNATC 2 cut(s) 522, 957
BseLI CCNNNNNNNGG 2 cut(s) 708, 709
BseMII CTCAG 1 cut(s) 417
BseNI ACTGG 1 cut(s) 767
BseRI GAGGAG 3 cut(s) 347, 411, 890
BseXI GCAGC 6 cut(s) 304, 468, 496, 946, 949, 952
BseYI CCCAGC 1 cut(s) 1057
BsgI GTGCAG 1 cut(s) 391
BshFI GGCC 3 cut(s) 98, 840, 975
BsiHKAI GWGCWC 2 cut(s) 791, 1066
BsiHKCI CYCGRG 2 cut(s) 106, 671
BsiSI CCGG 4 cut(s) 356, 805, 841, 865
BslI CCNNNNNNNGG 2 cut(s) 708, 709
BsmAI GTCTC 2 cut(s) 146, 203
BsmBI CGTCTC 1 cut(s) 203
BsnI GGCC 3 cut(s) 98, 840, 975
BsoBI CYCGRG 2 cut(s) 106, 671
Bsp1286I GDGCHC 2 cut(s) 791, 1066
Bsp143I GATC 7 cut(s) 10, 439, 489, 601, 904, 958, 1051
Bsp19I CCATGG 2 cut(s) 93, 1070
BspACI CCGC 2 cut(s) 729, 1075
BspANI GGCC 3 cut(s) 98, 840, 975
BspCNI CTCAG 1 cut(s) 418
BspHI TCATGA 1 cut(s) 1045
BspLI GGNNCC 1 cut(s) 701
BspMAI CTGCAG 1 cut(s) 486
BspPI GGATC 3 cut(s) 18, 447, 484
BsrFI RCCGGY 1 cut(s) 840
BsrI ACTGG 1 cut(s) 767
BssAI RCCGGY 1 cut(s) 840
BssECI CCNNGG 3 cut(s) 93, 167, 1070
BssMI GATC 7 cut(s) 10, 439, 489, 601, 904, 958, 1051
BssSI CACGAG 1 cut(s) 929
BssT1I CCWWGG 3 cut(s) 93, 167, 1070
Bst2BI CACGAG 1 cut(s) 929
Bst4CI ACNGT 1 cut(s) 857
Bst6I CTCTTC 2 cut(s) 243, 919
BstC8I GCNNGC 2 cut(s) 720, 787
BstDEI CTNAG 1 cut(s) 426
BstDSI CCRYGG 2 cut(s) 93, 1070
BstF5I GGATG 1 cut(s) 523
BstHHI GCGC 1 cut(s) 751
BstKTI GATC 7 cut(s) 13, 442, 492, 604, 907, 961, 1054
BstMAI GTCTC 2 cut(s) 146, 203
BstMBI GATC 7 cut(s) 10, 439, 489, 601, 904, 958, 1051
BstMWI GCNNNNNNNGC 3 cut(s) 156, 728, 940
BstNSI RCATGY 1 cut(s) 571
BstSFI CTRYAG 2 cut(s) 482, 732
BstV1I GCAGC 6 cut(s) 304, 468, 496, 946, 949, 952
BstV2I GAAGAC 1 cut(s) 41
BstX2I RGATCY 2 cut(s) 439, 489
BstYI RGATCY 2 cut(s) 439, 489
BsuRI GGCC 3 cut(s) 98, 840, 975
BtgI CCRYGG 2 cut(s) 93, 1070
BtgZI GCGATG 1 cut(s) 516
BtrI CACGTC 1 cut(s) 799
BtsCI GGATG 1 cut(s) 523
BtsI GCAGTG 1 cut(s) 744
BtsIMutI CAGTG 3 cut(s) 244, 744, 760
Cac8I GCNNGC 2 cut(s) 720, 787
CciI TCATGA 1 cut(s) 1045
CfoI GCGC 1 cut(s) 751
Cfr10I RCCGGY 1 cut(s) 840
Cfr13I GGNCC 3 cut(s) 699, 802, 880
Csp6I GTAC 1 cut(s) 337
CviAII CATG 7 cut(s) 94, 201, 314, 568, 980, 1046, 1071
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 1 cut(s) 426
DpnI GATC 7 cut(s) 12, 441, 491, 603, 906, 960, 1053
DpnII GATC 7 cut(s) 10, 439, 489, 601, 904, 958, 1051
EaeI YGGCCR 2 cut(s) 838, 973
Eam1104I CTCTTC 2 cut(s) 243, 919
EarI CTCTTC 2 cut(s) 243, 919
Ecl136II GAGCTC 1 cut(s) 1064
Eco130I CCWWGG 3 cut(s) 93, 167, 1070
Eco24I GRGCYC 1 cut(s) 1066
Eco32I GATATC 1 cut(s) 678
Eco47I GGWCC 3 cut(s) 699, 802, 880
Eco53kI GAGCTC 1 cut(s) 1064
Eco57I CTGAAG 1 cut(s) 671
Eco88I CYCGRG 2 cut(s) 106, 671
EcoICRI GAGCTC 1 cut(s) 1064
EcoRV GATATC 1 cut(s) 678
EcoT14I CCWWGG 3 cut(s) 93, 167, 1070
EcoT38I GRGCYC 1 cut(s) 1066
ErhI CCWWGG 3 cut(s) 93, 167, 1070
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 7 cut(s) 97, 204, 317, 571, 983, 1049, 1074
FatI CATG 7 cut(s) 93, 200, 313, 567, 979, 1045, 1070
FauI CCCGC 1 cut(s) 1068
FbaI TGATCA 1 cut(s) 601
Fnu4HI GCNGC 7 cut(s) 318, 482, 485, 729, 935, 938, 941
FokI GGATG 1 cut(s) 530
FriOI GRGCYC 1 cut(s) 1066
Fsp4HI GCNGC 7 cut(s) 318, 482, 485, 729, 935, 938, 941
FspI TGCGCA 1 cut(s) 750
GlaI GCGC 1 cut(s) 750
GluI GCNGC 7 cut(s) 318, 482, 485, 729, 935, 938, 941
GsaI CCCAGC 1 cut(s) 1061
HaeIII GGCC 3 cut(s) 98, 840, 975
HapII CCGG 4 cut(s) 356, 805, 841, 865
HhaI GCGC 1 cut(s) 751
Hin1II CATG 7 cut(s) 97, 204, 317, 571, 983, 1049, 1074
Hin6I GCGC 1 cut(s) 749
HinP1I GCGC 1 cut(s) 749
HindIII AAGCTT 1 cut(s) 754
HinfI GANTC 5 cut(s) 118, 523, 629, 645, 1035
HpaII CCGG 4 cut(s) 356, 805, 841, 865
HphI GGTGA 3 cut(s) 35, 43, 869
Hpy166II GTNNAC 2 cut(s) 339, 687
Hpy188I TCNGA 9 cut(s) 117, 123, 190, 269, 444, 457, 666, 963, 1021
Hpy188III TCNNGA 6 cut(s) 8, 649, 673, 872, 929, 1046
Hpy8I GTNNAC 2 cut(s) 339, 687
Hpy99I CGWCG 1 cut(s) 728
HpyAV CCTTC 1 cut(s) 136
HpyCH4III ACNGT 1 cut(s) 857
HpyCH4IV ACGT 2 cut(s) 791, 798
HpyCH4V TGCA 4 cut(s) 372, 484, 581, 774
HpyF10VI GCNNNNNNNGC 3 cut(s) 156, 728, 940
HpyF3I CTNAG 1 cut(s) 426
HpySE526I ACGT 2 cut(s) 791, 798
Hsp92II CATG 7 cut(s) 97, 204, 317, 571, 983, 1049, 1074
HspAI GCGC 1 cut(s) 749
Ksp22I TGATCA 1 cut(s) 601
Kzo9I GATC 7 cut(s) 10, 439, 489, 601, 904, 958, 1051
LmnI GCTCC 2 cut(s) 204, 1061
Lsp1109I GCAGC 6 cut(s) 304, 468, 496, 946, 949, 952
LweI GCATC 2 cut(s) 319, 568
MaeII ACGT 2 cut(s) 791, 798
MalI GATC 7 cut(s) 12, 441, 491, 603, 906, 960, 1053
MboI GATC 7 cut(s) 10, 439, 489, 601, 904, 958, 1051
MboII GAAGA 7 cut(s) 46, 260, 414, 442, 664, 906, 1061
MflI RGATCY 2 cut(s) 439, 489
MhlI GDGCHC 2 cut(s) 791, 1066
MlsI TGGCCA 1 cut(s) 975
MluCI AATT 3 cut(s) 135, 463, 1025
MluNI TGGCCA 1 cut(s) 975
MlyI GAGTC 3 cut(s) 638, 654, 1029
MmeI TCCRAC 3 cut(s) 644, 657, 774
Mox20I TGGCCA 1 cut(s) 975
MscI TGGCCA 1 cut(s) 975
MseI TTAA 2 cut(s) 345, 1029
MslI CAYNNNNRTG 1 cut(s) 92
Msp20I TGGCCA 1 cut(s) 975
MspA1I CMGCKG 1 cut(s) 1057
MspI CCGG 4 cut(s) 356, 805, 841, 865
MwoI GCNNNNNNNGC 3 cut(s) 156, 728, 940
NcoI CCATGG 2 cut(s) 93, 1070
NdeII GATC 7 cut(s) 10, 439, 489, 601, 904, 958, 1051
NlaIII CATG 7 cut(s) 97, 204, 317, 571, 983, 1049, 1074
NlaIV GGNNCC 1 cut(s) 701
NsbI TGCGCA 1 cut(s) 750
NspI RCATGY 1 cut(s) 571
PaeR7I CTCGAG 1 cut(s) 671
PagI TCATGA 1 cut(s) 1045
PciI ACATGT 1 cut(s) 567
PcsI WCGNNNNNNNCGW 1 cut(s) 474
PfeI GAWTC 2 cut(s) 118, 523
PflFI GACNNNGTC 1 cut(s) 800
PkrI GCNGC 7 cut(s) 319, 483, 486, 730, 936, 939, 942
PleI GAGTC 3 cut(s) 637, 653, 1029
PpsI GAGTC 3 cut(s) 637, 653, 1029
PscI ACATGT 1 cut(s) 567
PshBI ATTAAT 1 cut(s) 345
Psp124BI GAGCTC 1 cut(s) 1066
PspFI CCCAGC 1 cut(s) 1057
PspN4I GGNNCC 1 cut(s) 701
PspPI GGNCC 3 cut(s) 699, 802, 880
PstI CTGCAG 1 cut(s) 486
PsuI RGATCY 2 cut(s) 439, 489
PsyI GACNNNGTC 1 cut(s) 800
PvuII CAGCTG 1 cut(s) 1057
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
RseI CAYNNNNRTG 1 cut(s) 92
SacI GAGCTC 1 cut(s) 1066
SaqAI TTAA 2 cut(s) 345, 1029
SatI GCNGC 7 cut(s) 318, 482, 485, 729, 935, 938, 941
Sau3AI GATC 7 cut(s) 10, 439, 489, 601, 904, 958, 1051
Sau96I GGNCC 3 cut(s) 699, 802, 880
SchI GAGTC 3 cut(s) 638, 654, 1029
SduI GDGCHC 2 cut(s) 791, 1066
SfaNI GCATC 2 cut(s) 319, 568
SfcI CTRYAG 2 cut(s) 482, 732
Sfr274I CTCGAG 1 cut(s) 671
SinI GGWCC 3 cut(s) 699, 802, 880
SlaI CTCGAG 1 cut(s) 671
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 3 cut(s) 100, 621, 671
SmoI CTYRAG 3 cut(s) 100, 621, 671
Sse9I AATT 3 cut(s) 135, 463, 1025
SsiI CCGC 2 cut(s) 729, 1075
SspI AATATT 1 cut(s) 991
SstI GAGCTC 1 cut(s) 1066
StyI CCWWGG 3 cut(s) 93, 167, 1070
TaaI ACNGT 1 cut(s) 857
TaiI ACGT 2 cut(s) 794, 801
TaqI TCGA 3 cut(s) 672, 691, 999
TasI AATT 3 cut(s) 135, 463, 1025
TatI WGTACW 1 cut(s) 336
TauI GCSGC 1 cut(s) 731
TfiI GAWTC 2 cut(s) 118, 523
Tru1I TTAA 2 cut(s) 345, 1029
Tru9I TTAA 2 cut(s) 345, 1029
TscAI CASTG 3 cut(s) 244, 751, 767
TseI GCWGC 6 cut(s) 317, 481, 484, 934, 937, 940
TspDTI ATGAA 3 cut(s) 297, 1038, 1062
TspGWI ACGGA 1 cut(s) 227
TspRI CASTG 3 cut(s) 244, 751, 767
Tth111I GACNNNGTC 1 cut(s) 800
VpaK11BI GGWCC 3 cut(s) 699, 802, 880
VspI ATTAAT 1 cut(s) 345
XapI RAATTY 2 cut(s) 135, 1025
XceI RCATGY 1 cut(s) 571
XhoI CTCGAG 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.