FvH4_5g37900
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000636
Physical Location & Seq
Forward (+)
27971335 .. 27973274
1940 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37900.t1

Sequence Viewer

Length: 1059 bp
ATGGATCAGTTCGCCACTCTTGACGAACTCAATGTGGGTGTGGTCACGATCTTCCAACCTAGCGATGCCGAGTTGGTGGGTCATTACCTCTACAACCAGGTCTTCACTCCATCCTCAACCTCCAAGCAGATCTTCCCTGAGATCTGCATCTACGGCAAGGACGCCTTGCCTCCATGGGAGATATGGAGAGTTTATCAGCAATCCAGGTTTCCGAACCAGGATTTCATCTACTTCTTCTCCCCTGCTGAAAAGATGAACCCCAACAAGGCACGCCATTCTCGCAGAGTTGGCACTGATGGCAAACTTGGCACATGGAGTGAGGTCAACTCCTTCCATGTCGATGGAGTTCAAGAGGTGTTTGGGACACTGCGCAAGTTCCGATACGAGAAGAAGAAGAACAAGAAGGAAGTAGATATTACTGATGAGCACCATGGTGCTTGGTTAATGGATGAGTTCACCATTAACCATGCACCGGATTTGGCTCTGTGCCGAATCAAAGTTAATGAAAAAGGAGGAGACAGAGGAGGCATGAAGAGGAAGAATATTGAGGAGGATGAGATTTTGACAAGCAAAAAAAGAAAAGGTCAAAACAGTTGCACCACTTCTCAGCAAATGCCCTCTTCCTATTTTCATCAAGATGATCAAGTGGTGGTTCCAGAAAACAACTTTCCTGATGAGCTTGCGCAGATACTGATGAGTGATGATGATGATGATGATGATGAGAATCTCTCTCCAACTGCTGTATTGTGGAATGAGGCTGAGCTTAGGGCTTGTGTTGCTCAATCAATACCTAATGAGCAGCACTCAGTAGTGCCACAACAGCAGTTGGGACCTGATGAGAGTAGCAGCAGTCAAGAGGAGTACGCAGTACAACTACCACAACCAGATCAAGCCTCTTCCTCTCATTCTAATGAGCAGCAACAGCTTCTCGCTGATAATCACAATCTGATATCGATGATAGATTTTGATTCACTCGATGACACCTGCTTACAGTCCATCAATGGACTCTTTACTGATGAAGATCAGCCAAGCACTCAGCTATGGTGGCATTTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

353

Amino Acids

40.2

Weight (kDa)

4.62

Isoelectric Point (pI)

60.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 18 - 153 1.3e-15 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 992
Acc16I TGCGCA 2 cut(s) 371, 684
Acc36I ACCTGC 1 cut(s) 992
AclWI GGATC 1 cut(s) 12
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 2 cut(s) 863, 870
AfiI CCNNNNNNNGG 2 cut(s) 265, 472
AgsI TTSAA 1 cut(s) 350
AjnI CCWGG 3 cut(s) 96, 203, 216
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AleI CACNNNNGTG 1 cut(s) 432
AluBI AGCT 4 cut(s) 679, 763, 925, 1039
AluI AGCT 4 cut(s) 679, 763, 925, 1039
Alw21I GWGCWC 1 cut(s) 429
Alw26I GTCTC 1 cut(s) 510
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 691
ApeKI GCWGC 3 cut(s) 799, 846, 916
AspLEI GCGC 2 cut(s) 372, 685
AspS9I GGNCC 1 cut(s) 830
AsuHPI GGTGA 1 cut(s) 448
AvaII GGWCC 1 cut(s) 830
BbsI GAAGAC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 429
BbvI GCAGC 3 cut(s) 811, 858, 928
BccI CCATC 4 cut(s) 118, 290, 335, 1004
BceAI ACGGC 1 cut(s) 169
BciT130I CCWGG 3 cut(s) 98, 205, 218
BclI TGATCA 1 cut(s) 640
BcoDI GTCTC 1 cut(s) 510
BfaI CTAG 1 cut(s) 60
BfuAI ACCTGC 1 cut(s) 992
BglII AGATCT 2 cut(s) 129, 141
BisI GCNGC 3 cut(s) 800, 847, 917
BlpI GCTNAGC 1 cut(s) 759
BlsI GCNGC 3 cut(s) 801, 848, 918
Bme1390I CCNGG 3 cut(s) 98, 205, 218
Bme18I GGWCC 1 cut(s) 830
BmgT120I GGNCC 1 cut(s) 830
BmiI GGNNCC 2 cut(s) 654, 831
BmrFI CCNGG 3 cut(s) 98, 205, 218
BmsI GCATC 2 cut(s) 55, 156
BpiI GAAGAC 1 cut(s) 94
BplI GAGNNNNNCTC 6 cut(s) 311, 343, 713, 745, 788, 820
Bpu10I CCTNAGC 1 cut(s) 764
Bpu1102I GCTNAGC 1 cut(s) 759
Bsa29I ATCGAT 1 cut(s) 953
BsaBI GATNNNNATC 3 cut(s) 146, 723, 1020
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 173, 430
BsaWI WCCGGW 1 cut(s) 472
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 472
Bse8I GATNNNNATC 3 cut(s) 146, 723, 1020
BseBI CCWGG 3 cut(s) 98, 205, 218
BseCI ATCGAT 1 cut(s) 953
BseDI CCNNGG 2 cut(s) 173, 430
BseGI GGATG 3 cut(s) 110, 454, 559
BseJI GATNNNNATC 3 cut(s) 146, 723, 1020
BseLI CCNNNNNNNGG 2 cut(s) 265, 472
BseMII CTCAG 5 cut(s) 129, 620, 750, 819, 1049
BseRI GAGGAG 4 cut(s) 528, 537, 563, 872
BseXI GCAGC 3 cut(s) 811, 858, 928
BshVI ATCGAT 1 cut(s) 953
BsiHKAI GWGCWC 1 cut(s) 429
BsiSI CCGG 1 cut(s) 473
BslFI GGGAC 2 cut(s) 376, 843
BslI CCNNNNNNNGG 2 cut(s) 265, 472
BsmAI GTCTC 1 cut(s) 510
BsmFI GGGAC 2 cut(s) 376, 843
Bsp1286I GDGCHC 1 cut(s) 429
Bsp143I GATC 7 cut(s) 4, 48, 129, 141, 640, 886, 1021
Bsp1720I GCTNAGC 1 cut(s) 759
Bsp19I CCATGG 2 cut(s) 173, 430
BspCNI CTCAG 5 cut(s) 130, 619, 751, 818, 1048
BspDI ATCGAT 1 cut(s) 953
BspLI GGNNCC 2 cut(s) 654, 831
BspMI ACCTGC 1 cut(s) 992
BspPI GGATC 1 cut(s) 12
BssECI CCNNGG 2 cut(s) 173, 430
BssMI GATC 7 cut(s) 4, 48, 129, 141, 640, 886, 1021
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 2 cut(s) 173, 430
Bst2UI CCWGG 3 cut(s) 98, 205, 218
Bst4CI ACNGT 2 cut(s) 593, 993
Bst6I CTCTTC 3 cut(s) 527, 625, 901
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 2 cut(s) 271, 681
BstDEI CTNAG 6 cut(s) 138, 606, 759, 764, 805, 1035
BstDSI CCRYGG 2 cut(s) 173, 430
BstF5I GGATG 3 cut(s) 110, 454, 559
BstHHI GCGC 2 cut(s) 372, 685
BstKTI GATC 7 cut(s) 7, 51, 132, 144, 643, 889, 1024
BstMAI GTCTC 1 cut(s) 510
BstMBI GATC 7 cut(s) 4, 48, 129, 141, 640, 886, 1021
BstMWI GCNNNNNNNGC 9 cut(s) 153, 279, 288, 297, 306, 776, 820, 922, 1045
BstNI CCWGG 3 cut(s) 98, 205, 218
BstSCI CCNGG 3 cut(s) 96, 203, 216
BstV1I GCAGC 3 cut(s) 811, 858, 928
BstV2I GAAGAC 1 cut(s) 94
BstX2I RGATCY 2 cut(s) 129, 141
BstXI CCANNNNNNTGG 1 cut(s) 341
BstYI RGATCY 2 cut(s) 129, 141
Bsu15I ATCGAT 1 cut(s) 953
BsuTUI ATCGAT 1 cut(s) 953
BtgI CCRYGG 2 cut(s) 173, 430
BtgZI GCGATG 1 cut(s) 78
BtsCI GGATG 3 cut(s) 110, 454, 559
BtsI GCAGTG 1 cut(s) 365
BtsIMutI CAGTG 2 cut(s) 291, 365
BveI ACCTGC 1 cut(s) 992
Cac8I GCNNGC 2 cut(s) 271, 681
CaiI CAGNNNCTG 1 cut(s) 691
CfoI GCGC 2 cut(s) 372, 685
Cfr13I GGNCC 1 cut(s) 830
ClaI ATCGAT 1 cut(s) 953
CseI GACGC 1 cut(s) 170
CsiI ACCWGGT 1 cut(s) 96
Csp6I GTAC 2 cut(s) 862, 869
CviAII CATG 6 cut(s) 174, 312, 335, 431, 467, 529
CviJI RGCY 9 cut(s) 482, 679, 758, 763, 770, 893, 925, 1027, 1039
CviKI_1 RGCY 9 cut(s) 482, 679, 758, 763, 770, 893, 925, 1027, 1039
CviQI GTAC 2 cut(s) 862, 869
DdeI CTNAG 6 cut(s) 138, 606, 759, 764, 805, 1035
DpnI GATC 7 cut(s) 6, 50, 131, 143, 642, 888, 1023
DpnII GATC 7 cut(s) 4, 48, 129, 141, 640, 886, 1021
Eam1104I CTCTTC 3 cut(s) 527, 625, 901
EarI CTCTTC 3 cut(s) 527, 625, 901
Eco130I CCWWGG 2 cut(s) 173, 430
Eco32I GATATC 1 cut(s) 951
Eco47I GGWCC 1 cut(s) 830
EcoO109I RGGNCCY 1 cut(s) 830
EcoRII CCWGG 3 cut(s) 96, 203, 216
EcoRV GATATC 1 cut(s) 951
EcoT14I CCWWGG 2 cut(s) 173, 430
ErhI CCWWGG 2 cut(s) 173, 430
FaeI CATG 6 cut(s) 177, 315, 338, 434, 470, 532
FaiI YATR 8 cut(s) 175, 184, 313, 336, 432, 468, 530, 1042
FalI AAGNNNNNCTT 4 cut(s) 116, 148, 149, 181
FaqI GGGAC 2 cut(s) 376, 843
FatI CATG 6 cut(s) 173, 311, 334, 430, 466, 528
FbaI TGATCA 1 cut(s) 640
Fnu4HI GCNGC 3 cut(s) 800, 847, 917
FokI GGATG 3 cut(s) 97, 461, 566
Fsp4HI GCNGC 3 cut(s) 800, 847, 917
FspBI CTAG 1 cut(s) 60
FspI TGCGCA 2 cut(s) 371, 684
GlaI GCGC 2 cut(s) 371, 684
GluI GCNGC 3 cut(s) 800, 847, 917
HapII CCGG 1 cut(s) 473
HgaI GACGC 1 cut(s) 170
HhaI GCGC 2 cut(s) 372, 685
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 6 cut(s) 177, 315, 338, 434, 470, 532
Hin6I GCGC 2 cut(s) 370, 683
HinP1I GCGC 2 cut(s) 370, 683
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 4 cut(s) 492, 724, 968, 1005
HpaII CCGG 1 cut(s) 473
HphI GGTGA 1 cut(s) 448
Hpy166II GTNNAC 2 cut(s) 325, 456
Hpy188I TCNGA 3 cut(s) 213, 380, 948
Hpy188III TCNNGA 7 cut(s) 20, 46, 350, 635, 656, 671, 854
Hpy8I GTNNAC 2 cut(s) 325, 456
HpyAV CCTTC 2 cut(s) 340, 397
HpyCH4III ACNGT 2 cut(s) 593, 993
HpyCH4V TGCA 3 cut(s) 147, 470, 597
HpyF10VI GCNNNNNNNGC 9 cut(s) 153, 279, 288, 297, 306, 776, 820, 922, 1045
HpyF3I CTNAG 6 cut(s) 138, 606, 759, 764, 805, 1035
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 6 cut(s) 177, 315, 338, 434, 470, 532
HspAI GCGC 2 cut(s) 370, 683
Ksp22I TGATCA 1 cut(s) 640
Kzo9I GATC 7 cut(s) 4, 48, 129, 141, 640, 886, 1021
Lsp1109I GCAGC 3 cut(s) 811, 858, 928
LweI GCATC 2 cut(s) 55, 156
MabI ACCWGGT 1 cut(s) 96
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 43
MalI GATC 7 cut(s) 6, 50, 131, 143, 642, 888, 1023
MboI GATC 7 cut(s) 4, 48, 129, 141, 640, 886, 1021
MflI RGATCY 2 cut(s) 129, 141
MhlI GDGCHC 1 cut(s) 429
MlyI GAGTC 1 cut(s) 999
MmeI TCCRAC 2 cut(s) 79, 758
MseI TTAA 3 cut(s) 443, 462, 501
MslI CAYNNNNRTG 4 cut(s) 339, 432, 636, 909
MspI CCGG 1 cut(s) 473
MspR9I CCNGG 3 cut(s) 98, 205, 218
MvaI CCWGG 3 cut(s) 98, 205, 218
MwoI GCNNNNNNNGC 9 cut(s) 153, 279, 288, 297, 306, 776, 820, 922, 1045
NcoI CCATGG 2 cut(s) 173, 430
NdeII GATC 7 cut(s) 4, 48, 129, 141, 640, 886, 1021
NlaIII CATG 6 cut(s) 177, 315, 338, 434, 470, 532
NlaIV GGNNCC 2 cut(s) 654, 831
NmeAIII GCCGAG 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 43
NsbI TGCGCA 2 cut(s) 371, 684
OliI CACNNNNGTG 1 cut(s) 432
PaqCI CACCTGC 1 cut(s) 992
PfeI GAWTC 3 cut(s) 492, 724, 968
PkrI GCNGC 3 cut(s) 801, 848, 918
PleI GAGTC 1 cut(s) 999
PpsI GAGTC 1 cut(s) 999
PpuMI RGGWCCY 1 cut(s) 830
Psp5II RGGWCCY 1 cut(s) 830
Psp6I CCWGG 3 cut(s) 96, 203, 216
PspGI CCWGG 3 cut(s) 96, 203, 216
PspN4I GGNNCC 2 cut(s) 654, 831
PspPI GGNCC 1 cut(s) 830
PspPPI RGGWCCY 1 cut(s) 830
PstNI CAGNNNCTG 1 cut(s) 691
PsuI RGATCY 2 cut(s) 129, 141
RsaI GTAC 2 cut(s) 863, 870
RsaNI GTAC 2 cut(s) 862, 869
RseI CAYNNNNRTG 4 cut(s) 339, 432, 636, 909
SaqAI TTAA 3 cut(s) 443, 462, 501
SatI GCNGC 3 cut(s) 800, 847, 917
Sau3AI GATC 7 cut(s) 4, 48, 129, 141, 640, 886, 1021
Sau96I GGNCC 1 cut(s) 830
SchI GAGTC 1 cut(s) 999
ScrFI CCNGG 3 cut(s) 98, 205, 218
SduI GDGCHC 1 cut(s) 429
SexAI ACCWGGT 1 cut(s) 96
SfaNI GCATC 2 cut(s) 55, 156
SinI GGWCC 1 cut(s) 830
SmiMI CAYNNNNRTG 4 cut(s) 339, 432, 636, 909
SspI AATATT 1 cut(s) 544
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 3 cut(s) 96, 203, 216
StyI CCWWGG 2 cut(s) 173, 430
TaaI ACNGT 2 cut(s) 593, 993
TaqI TCGA 3 cut(s) 339, 953, 975
TatI WGTACW 1 cut(s) 868
TfiI GAWTC 3 cut(s) 492, 724, 968
Tru1I TTAA 3 cut(s) 443, 462, 501
Tru9I TTAA 3 cut(s) 443, 462, 501
TscAI CASTG 2 cut(s) 298, 372
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 3 cut(s) 799, 846, 916
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 6 cut(s) 214, 269, 519, 545, 620, 1032
TspRI CASTG 2 cut(s) 298, 372
VpaK11BI GGWCC 1 cut(s) 830
XcmI CCANNNNNNNNNTGG 1 cut(s) 180
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.