Rh7BG437600
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000636
Physical Location & Seq
Reverse (-)
50357033 .. 50358061
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG437600.1

Sequence Viewer

Length: 1029 bp
ATGGCAATTTCTTGTTTCATGATGAGCCTAGAAGACCTTGATGTCGGTGTTGTGAAGACCTTCCACCCCACTGATTCTGATTTAGTGGGAACCTATCTCTACAACAGAATCAAATCCCCAACCCCAATTGGAGCAAAACAAACATTTCCTGAGATTGAAATATATGGCACCACAGGTTTACCACCATGGGATATTTGGAGAATTTATGAGCCTTCCAAATTTCCACATCAAGATTATATCTATTTCTTCTCCCGGGTCAAGAAGTTGGGTTCCCGCTGTTCTCGCAGAATTGGCTGCCATGGGGGCACATGGAGCGAGACAGAAGCTGCTAAACCTGTCTATGTCAGTGGAATTGAAGAGCCTTATGGGAAACTAAGGAAGTTTAGATACGAGAACAACAAAGACAAGGGCTTTGAACACCATGCTGCTTGGTTGATGGATGAGTACACCATCAACCAAGCACCCGATCTGGCTTTGTGCCGACTCAAAGTCAATGATAAAGGAGGTGGAGGAAGAAAAAAGAGGAAGAAGAGTTCTGATGAGACTAATGAGGACGAGAATCACAGAAAGACAAAGAGAGTTCAAGTTCAAAACAACATGTGTGAGCAACAAAAGGGAAGTGCCTCATTTAGTAGTACACAGCAACTGCCCCCACAATGTGATGATCATGATTACTGTATGGATGAGAACCTACTGTTCTCTCCAACTGGCTTGGTTGATGATTATCATGACATTTTCAATAGTGATGAGTTTTTGGCTTCTCTTGATCAATGGTATGAGGAACAACTTTCGGATTCTTCACTACTAGTATTGCCGCAACAAGAAGTAGAACCTAACAACAGTTGCGAGGAACAACAACACCAACAAGATGAGCAGAAACTGCTGCCTTCTCCCTCTCTTGTTCACGAGCAGCAGCTCTCTGGTGGTTTTGATCTGATGGTTTGTGGTTATGATATTCCACTCGATACTCCCTACTTGCAGTCTGACGAATTTTATGGATTTGATCAAGATCAGCCTAAAGCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

342

Amino Acids

39.27

Weight (kDa)

4.88

Isoelectric Point (pI)

54.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 20 - 150 8.4e-17 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AccB1I GGYRCC 1 cut(s) 167
AciI CCGC 2 cut(s) 274, 815
AcsI RAATTY 3 cut(s) 201, 218, 989
AdeI CACNNNGTG 1 cut(s) 659
AfaI GTAC 2 cut(s) 446, 637
AflIII ACRYGT 1 cut(s) 597
AgsI TTSAA 6 cut(s) 158, 356, 416, 584, 590, 739
AhdI GACNNNNNGTC 1 cut(s) 488
AhlI ACTAGT 1 cut(s) 805
AloI GAACNNNNNNTCC 2 cut(s) 517, 549
AluBI AGCT 2 cut(s) 326, 916
AluI AGCT 2 cut(s) 326, 916
Alw26I GTCTC 2 cut(s) 311, 536
AlwNI CAGNNNCTG 3 cut(s) 326, 646, 880
Ama87I CYCGRG 1 cut(s) 252
ApeKI GCWGC 6 cut(s) 294, 326, 425, 883, 910, 913
ApoI RAATTY 3 cut(s) 201, 218, 989
ArsI GACNNNNNNTTYG 2 cut(s) 395, 427
Asp700I GAANNNNTTC 1 cut(s) 59
AsuC2I CCSGG 2 cut(s) 253, 254
AvaI CYCGRG 1 cut(s) 252
BaeGI GKGCMC 1 cut(s) 308
BanI GGYRCC 1 cut(s) 167
BarI GAAGNNNNNNTAC 2 cut(s) 371, 403
BauI CACGAG 1 cut(s) 905
BbsI GAAGAC 2 cut(s) 39, 62
BbvI GCAGC 6 cut(s) 281, 313, 412, 870, 922, 925
BccI CCATC 3 cut(s) 430, 458, 931
BclI TGATCA 3 cut(s) 664, 766, 1003
BcnI CCSGG 2 cut(s) 253, 254
BcoDI GTCTC 2 cut(s) 311, 536
BcuI ACTAGT 1 cut(s) 805
BfaI CTAG 2 cut(s) 29, 806
BglI GCCNNNNNGGC 1 cut(s) 303
BisI GCNGC 7 cut(s) 295, 327, 426, 815, 884, 911, 914
BlsI GCNGC 7 cut(s) 296, 328, 427, 816, 885, 912, 915
Bme1390I CCNGG 2 cut(s) 253, 254
BmeRI GACNNNNNGTC 1 cut(s) 488
BmeT110I CYCGRG 1 cut(s) 252
BmiI GGNNCC 3 cut(s) 91, 169, 271
BmrFI CCNGG 2 cut(s) 253, 254
BpiI GAAGAC 2 cut(s) 39, 62
BpuMI CCSGG 2 cut(s) 253, 254
BsaBI GATNNNNATC 2 cut(s) 723, 1008
BsaJI CCNNGG 3 cut(s) 185, 252, 298
Bse1I ACTGG 1 cut(s) 712
Bse8I GATNNNNATC 2 cut(s) 723, 1008
BseDI CCNNGG 3 cut(s) 185, 252, 298
BseGI GGATG 2 cut(s) 445, 688
BseJI GATNNNNATC 2 cut(s) 723, 1008
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 712
BseSI GKGCMC 1 cut(s) 308
BseXI GCAGC 6 cut(s) 281, 313, 412, 870, 922, 925
BshNI GGYRCC 1 cut(s) 167
BsiHKCI CYCGRG 1 cut(s) 252
BsiSI CCGG 1 cut(s) 253
BsmAI GTCTC 2 cut(s) 311, 536
BsoBI CYCGRG 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 308
Bsp143I GATC 6 cut(s) 466, 664, 766, 931, 1003, 1009
Bsp19I CCATGG 2 cut(s) 185, 298
BspACI CCGC 2 cut(s) 274, 815
BspCNI CTCAG 1 cut(s) 142
BspHI TCATGA 3 cut(s) 18, 667, 727
BspLI GGNNCC 3 cut(s) 91, 169, 271
BspQI GCTCTTC 1 cut(s) 351
BspT107I GGYRCC 1 cut(s) 167
BsrI ACTGG 1 cut(s) 712
BssECI CCNNGG 3 cut(s) 185, 252, 298
BssMI GATC 6 cut(s) 466, 664, 766, 931, 1003, 1009
BssSI CACGAG 1 cut(s) 905
BssT1I CCWWGG 2 cut(s) 185, 298
Bst2BI CACGAG 1 cut(s) 905
Bst4CI ACNGT 4 cut(s) 677, 696, 842, 1026
Bst6I CTCTTC 2 cut(s) 351, 524
BstAPI GCANNNNNTGC 1 cut(s) 880
BstDEI CTNAG 2 cut(s) 150, 374
BstDSI CCRYGG 2 cut(s) 185, 298
BstF5I GGATG 2 cut(s) 445, 688
BstKTI GATC 6 cut(s) 469, 667, 769, 934, 1006, 1012
BstMAI GTCTC 2 cut(s) 311, 536
BstMBI GATC 6 cut(s) 466, 664, 766, 931, 1003, 1009
BstMWI GCNNNNNNNGC 5 cut(s) 282, 291, 303, 312, 880
BstNSI RCATGY 1 cut(s) 601
BstSCI CCNGG 2 cut(s) 251, 252
BstSLI GKGCMC 1 cut(s) 308
BstV1I GCAGC 6 cut(s) 281, 313, 412, 870, 922, 925
BstV2I GAAGAC 2 cut(s) 39, 62
BtgI CCRYGG 2 cut(s) 185, 298
BtsCI GGATG 2 cut(s) 445, 688
BtsIMutI CAGTG 3 cut(s) 69, 352, 1022
CaiI CAGNNNCTG 3 cut(s) 326, 646, 880
CciI TCATGA 3 cut(s) 18, 667, 727
Cfr9I CCCGGG 1 cut(s) 252
Csp6I GTAC 2 cut(s) 445, 636
CviAII CATG 8 cut(s) 19, 186, 299, 309, 422, 598, 668, 728
CviQI GTAC 2 cut(s) 445, 636
DdeI CTNAG 2 cut(s) 150, 374
DpnI GATC 6 cut(s) 468, 666, 768, 933, 1005, 1011
DpnII GATC 6 cut(s) 466, 664, 766, 931, 1003, 1009
DraIII CACNNNGTG 1 cut(s) 659
DrdI GACNNNNNNGTC 1 cut(s) 41
DriI GACNNNNNGTC 1 cut(s) 488
DseDI GACNNNNNNGTC 1 cut(s) 41
Eam1104I CTCTTC 2 cut(s) 351, 524
Eam1105I GACNNNNNGTC 1 cut(s) 488
EarI CTCTTC 2 cut(s) 351, 524
Eco130I CCWWGG 2 cut(s) 185, 298
Eco88I CYCGRG 1 cut(s) 252
EcoT14I CCWWGG 2 cut(s) 185, 298
ErhI CCWWGG 2 cut(s) 185, 298
FaeI CATG 8 cut(s) 22, 189, 302, 312, 425, 601, 671, 731
FatI CATG 8 cut(s) 18, 185, 298, 308, 421, 597, 667, 727
FauI CCCGC 1 cut(s) 281
FbaI TGATCA 3 cut(s) 664, 766, 1003
Fnu4HI GCNGC 7 cut(s) 295, 327, 426, 815, 884, 911, 914
FokI GGATG 2 cut(s) 452, 695
Fsp4HI GCNGC 7 cut(s) 295, 327, 426, 815, 884, 911, 914
FspBI CTAG 2 cut(s) 29, 806
GluI GCNGC 7 cut(s) 295, 327, 426, 815, 884, 911, 914
HapII CCGG 1 cut(s) 253
Hin1II CATG 8 cut(s) 22, 189, 302, 312, 425, 601, 671, 731
HinfI GANTC 5 cut(s) 74, 108, 483, 559, 794
HpaII CCGG 1 cut(s) 253
Hpy166II GTNNAC 4 cut(s) 179, 447, 638, 904
Hpy188I TCNGA 5 cut(s) 79, 538, 793, 936, 985
Hpy188III TCNNGA 9 cut(s) 19, 149, 230, 259, 668, 728, 764, 905, 1007
Hpy8I GTNNAC 4 cut(s) 179, 447, 638, 904
HpyAV CCTTC 3 cut(s) 70, 222, 897
HpyCH4III ACNGT 4 cut(s) 677, 696, 842, 1026
HpyCH4V TGCA 1 cut(s) 979
HpyF10VI GCNNNNNNNGC 5 cut(s) 282, 291, 303, 312, 880
HpyF3I CTNAG 2 cut(s) 150, 374
Hsp92II CATG 8 cut(s) 22, 189, 302, 312, 425, 601, 671, 731
Ksp22I TGATCA 3 cut(s) 664, 766, 1003
Kzo9I GATC 6 cut(s) 466, 664, 766, 931, 1003, 1009
LguI GCTCTTC 1 cut(s) 351
LmnI GCTCC 2 cut(s) 131, 312
LpnPI CCDG 7 cut(s) 159, 162, 266, 348, 455, 693, 906
Lsp1109I GCAGC 6 cut(s) 281, 313, 412, 870, 922, 925
MaeI CTAG 2 cut(s) 29, 806
MalI GATC 6 cut(s) 468, 666, 768, 933, 1005, 1011
MboI GATC 6 cut(s) 466, 664, 766, 931, 1003, 1009
MboII GAAGA 8 cut(s) 44, 67, 238, 368, 525, 538, 541, 789
MfeI CAATTG 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 308
MluCI AATT 7 cut(s) 6, 126, 201, 218, 288, 351, 989
MlyI GAGTC 1 cut(s) 477
MmeI TCCRAC 1 cut(s) 728
MnlI CCTC 8 cut(s) 497, 503, 516, 544, 634, 772, 841, 904
MroXI GAANNNNTTC 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 276
MspI CCGG 1 cut(s) 253
MspR9I CCNGG 2 cut(s) 253, 254
MunI CAATTG 1 cut(s) 126
MwoI GCNNNNNNNGC 5 cut(s) 282, 291, 303, 312, 880
NciI CCSGG 2 cut(s) 253, 254
NcoI CCATGG 2 cut(s) 185, 298
NdeII GATC 6 cut(s) 466, 664, 766, 931, 1003, 1009
NlaIII CATG 8 cut(s) 22, 189, 302, 312, 425, 601, 671, 731
NlaIV GGNNCC 3 cut(s) 91, 169, 271
NspI RCATGY 1 cut(s) 601
PagI TCATGA 3 cut(s) 18, 667, 727
PciI ACATGT 1 cut(s) 597
PciSI GCTCTTC 1 cut(s) 351
PdmI GAANNNNTTC 1 cut(s) 59
PfeI GAWTC 4 cut(s) 74, 108, 559, 794
PkrI GCNGC 7 cut(s) 296, 328, 427, 816, 885, 912, 915
PleI GAGTC 1 cut(s) 477
PpsI GAGTC 1 cut(s) 477
PscI ACATGT 1 cut(s) 597
PspN4I GGNNCC 3 cut(s) 91, 169, 271
PstNI CAGNNNCTG 3 cut(s) 326, 646, 880
RsaI GTAC 2 cut(s) 446, 637
RsaNI GTAC 2 cut(s) 445, 636
SapI GCTCTTC 1 cut(s) 351
SatI GCNGC 7 cut(s) 295, 327, 426, 815, 884, 911, 914
Sau3AI GATC 6 cut(s) 466, 664, 766, 931, 1003, 1009
SchI GAGTC 1 cut(s) 477
ScrFI CCNGG 2 cut(s) 253, 254
SduI GDGCHC 1 cut(s) 308
SmaI CCCGGG 1 cut(s) 254
SpeI ACTAGT 1 cut(s) 805
Sse9I AATT 7 cut(s) 6, 126, 201, 218, 288, 351, 989
SsiI CCGC 2 cut(s) 274, 815
SspMI CTAG 2 cut(s) 29, 806
StyD4I CCNGG 2 cut(s) 251, 252
StyI CCWWGG 2 cut(s) 185, 298
TaaI ACNGT 4 cut(s) 677, 696, 842, 1026
TaqI TCGA 1 cut(s) 963
TasI AATT 7 cut(s) 6, 126, 201, 218, 288, 351, 989
TatI WGTACW 2 cut(s) 444, 635
TauI GCSGC 1 cut(s) 817
TfiI GAWTC 4 cut(s) 74, 108, 559, 794
TscAI CASTG 3 cut(s) 76, 352, 1029
TseI GCWGC 6 cut(s) 294, 326, 425, 883, 910, 913
TspDTI ATGAA 1 cut(s) 7
TspMI CCCGGG 1 cut(s) 252
TspRI CASTG 3 cut(s) 76, 352, 1029
XapI RAATTY 3 cut(s) 201, 218, 989
XceI RCATGY 1 cut(s) 601
XcmI CCANNNNNNNNNTGG 1 cut(s) 192
XmaI CCCGGG 1 cut(s) 252
XmnI GAANNNNTTC 1 cut(s) 59
XspI CTAG 2 cut(s) 29, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.