Rw7G041070
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000636
Physical Location & Seq
Forward (+)
64012399 .. 64025676
13278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041070.1

Sequence Viewer

Length: 1248 bp
ATGGCTTCTTCTTCTTCTTCTTCTTCAATTTCTTGTTTCATGAGCCTAGAAGACCTTGATGTGGATCAATTCATGACTCTGGATCAACTTGATGTGGGCGTGGTGAAGACGTTTCACCCTACTGAAGCTGAGTTGGTGGGTTTCTTTCTATACAACAAGATTTCCATGGCCTCAAACCCAGGCAATCATATTCAGACCTTCCCTGAAATTTGTATATACGGCGAGACAGGCTTACCACCTTGGGAGATATGGAGGGTATATCAGCAATTCAAGTTTCCCCACCAAGATTTTCTCTACTTCTTCTCCCGGGCCAAGAAAGTGAGCCCCAACAAATCTCGCAACTCTCGCACGGTTGGCTCTGATGGAGGAACGTGGAGCGAGACGGAAGCCGGTAGGACTGTGTATATCAGTGGAAGTGAAGAAGCGTTTGGGAAAGTCAGGAAGTTTCGGTATGAAAAGAACAAGGACAAAACGTTTGTGCATCACGCTGCTTGGTTGATGGAGGAGTACACCATCAACCAAGCACCGGATCTAGCTTTGTGCCGACTCAAAATCAATGATAAAGGAGGAGGAAGAAAAAAGAGGAAGAAGAGTTCTGATGAGACTAACGAGGATCAGAATGTGAGAAGCAAAAAGTGTTTGAAAAACCGAAAAGTTGAACCGAGAAGAGATCAAACTAGTTTCTTGGATCCTGAGGAGCAACAAGAAGGCAGTGCTTCCTTTGCTACTACTACTTCACAGCTAATTCTCTCTCCCTATCATCATGAAGATGATCAAGTGGTTCAGGTGGTTCCGGAGAACAATTACGATTATGACAAGCTGCAGCAGATCCTCTTTAGTGATGATGATTGTATGGATGAGAATCTAATGTTCTCTCCCACTATCTTGTTTGATGATGCTCAGCTTATGGCTTATGTTGATCGATCAGTATCCAGTGAGCAACAACAACAACAAGACTCGGATTATTCACTTGCGCCGCAACAGCAATTGGAACCTGACAATAGGTGTCAAGAGGAGGACCAAATACAACAAGAAGATCAGCCCTCTTCCTCTCATTCTCATGAGCAGCAGCAGCTCATCGGTGATGACGATCTGATGATTTCTGGCCAACGTGACTATAATATTCCACTAGATAACGACTTCTTATGGTCAGATGAATTTAATGGACTCTTGACTCATGAAGATCAGCTGGGAGCTCTGCCATGGTGGGAAACTGATGATCAGTTTCAGTATTCTGACATCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

415

Amino Acids

47.89

Weight (kDa)

4.56

Isoelectric Point (pI)

54.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 37 - 171 1.2e-17 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 793
AciI CCGC 1 cut(s) 977
AclI AACGTT 1 cut(s) 473
AclWI GGATC 7 cut(s) 72, 90, 537, 621, 683, 696, 823
AcoI YGGCCR 1 cut(s) 1105
AcsI RAATTY 2 cut(s) 207, 1157
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 1 cut(s) 509
AfiI CCNNNNNNNGG 2 cut(s) 61, 526
AgsI TTSAA 4 cut(s) 27, 271, 643, 659
AhlI ACTAGT 1 cut(s) 677
AjnI CCWGG 1 cut(s) 178
AjuI GAANNNNNNNTTGG 2 cut(s) 411, 443
AloI GAACNNNNNNTCC 2 cut(s) 577, 609
AluBI AGCT 8 cut(s) 128, 536, 742, 820, 904, 1075, 1189, 1196
AluI AGCT 8 cut(s) 128, 536, 742, 820, 904, 1075, 1189, 1196
Alw21I GWGCWC 1 cut(s) 1198
Alw26I GTCTC 3 cut(s) 218, 374, 596
AlwI GGATC 7 cut(s) 72, 90, 537, 621, 683, 696, 823
Ama87I CYCGRG 1 cut(s) 306
Aor13HI TCCGGA 1 cut(s) 793
AoxI GGCC 3 cut(s) 168, 309, 1105
ApeKI GCWGC 6 cut(s) 488, 820, 823, 1066, 1069, 1072
ApoI RAATTY 2 cut(s) 207, 1157
ArsI GACNNNNNNTTYG 2 cut(s) 458, 490
AspLEI GCGC 1 cut(s) 976
AspS9I GGNCC 2 cut(s) 309, 1018
AsuC2I CCSGG 2 cut(s) 307, 308
AsuHPI GGTGA 3 cut(s) 107, 115, 1094
AvaI CYCGRG 1 cut(s) 306
AvaII GGWCC 1 cut(s) 1018
AxyI CCTNAGG 1 cut(s) 693
BalI TGGCCA 1 cut(s) 1107
BamHI GGATCC 1 cut(s) 688
BanII GRGCYC 2 cut(s) 326, 1198
BbsI GAAGAC 2 cut(s) 57, 113
Bbv12I GWGCWC 1 cut(s) 1198
BbvI GCAGC 6 cut(s) 475, 807, 835, 1078, 1081, 1084
BccI CCATC 3 cut(s) 356, 493, 521
BceAI ACGGC 1 cut(s) 235
BciT130I CCWGG 1 cut(s) 180
BciVI GTATCC 1 cut(s) 940
BclI TGATCA 2 cut(s) 772, 1219
BcnI CCSGG 2 cut(s) 307, 308
BcoDI GTCTC 3 cut(s) 218, 374, 596
BcuI ACTAGT 1 cut(s) 677
BfaI CTAG 4 cut(s) 47, 533, 678, 1130
BfmI CTRYAG 1 cut(s) 821
BfuI GTATCC 1 cut(s) 940
BisI GCNGC 7 cut(s) 489, 821, 824, 977, 1067, 1070, 1073
BlpI GCTNAGC 1 cut(s) 900
BlsI GCNGC 7 cut(s) 490, 822, 825, 978, 1068, 1071, 1074
Bme1390I CCNGG 3 cut(s) 180, 307, 308
Bme18I GGWCC 1 cut(s) 1018
BmeT110I CYCGRG 1 cut(s) 306
BmgT120I GGNCC 2 cut(s) 309, 1018
BmiI GGNNCC 3 cut(s) 690, 792, 993
BmrFI CCNGG 3 cut(s) 180, 307, 308
BmsI GCATC 2 cut(s) 490, 886
BpiI GAAGAC 2 cut(s) 57, 113
Bpu1102I GCTNAGC 1 cut(s) 900
BpuMI CCSGG 2 cut(s) 307, 308
Bsa29I ATCGAT 1 cut(s) 922
BsaBI GATNNNNATC 4 cut(s) 63, 861, 928, 1089
BsaJI CCNNGG 5 cut(s) 165, 178, 239, 306, 1202
BsaWI WCCGGW 2 cut(s) 526, 793
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 526
Bse118I RCCGGY 1 cut(s) 389
Bse1I ACTGG 1 cut(s) 933
Bse21I CCTNAGG 1 cut(s) 693
Bse8I GATNNNNATC 4 cut(s) 63, 861, 928, 1089
BseAI TCCGGA 1 cut(s) 793
BseBI CCWGG 1 cut(s) 180
BseCI ATCGAT 1 cut(s) 922
BseDI CCNNGG 5 cut(s) 165, 178, 239, 306, 1202
BseGI GGATG 1 cut(s) 862
BseJI GATNNNNATC 4 cut(s) 63, 861, 928, 1089
BseLI CCNNNNNNNGG 2 cut(s) 61, 526
BseMII CTCAG 3 cut(s) 120, 684, 914
BseNI ACTGG 1 cut(s) 933
BseRI GAGGAG 4 cut(s) 518, 582, 710, 1028
BseXI GCAGC 6 cut(s) 475, 807, 835, 1078, 1081, 1084
BseYI CCCAGC 1 cut(s) 1189
BshFI GGCC 3 cut(s) 170, 311, 1107
BshVI ATCGAT 1 cut(s) 922
BsiHKAI GWGCWC 1 cut(s) 1198
BsiHKCI CYCGRG 1 cut(s) 306
BsiSI CCGG 4 cut(s) 307, 390, 527, 794
BslI CCNNNNNNNGG 2 cut(s) 61, 526
BsmAI GTCTC 3 cut(s) 218, 374, 596
BsmBI CGTCTC 1 cut(s) 374
BsnI GGCC 3 cut(s) 170, 311, 1107
BsoBI CYCGRG 1 cut(s) 306
Bsp1286I GDGCHC 2 cut(s) 326, 1198
Bsp13I TCCGGA 1 cut(s) 793
Bsp1720I GCTNAGC 1 cut(s) 900
Bsp19I CCATGG 2 cut(s) 165, 1202
BspACI CCGC 1 cut(s) 977
BspANI GGCC 3 cut(s) 170, 311, 1107
BspCNI CTCAG 3 cut(s) 121, 685, 913
BspDI ATCGAT 1 cut(s) 922
BspEI TCCGGA 1 cut(s) 793
BspHI TCATGA 5 cut(s) 39, 72, 763, 1060, 1177
BspLI GGNNCC 3 cut(s) 690, 792, 993
BspMAI CTGCAG 1 cut(s) 825
BspPI GGATC 7 cut(s) 72, 90, 537, 621, 683, 696, 823
BsrFI RCCGGY 1 cut(s) 389
BsrI ACTGG 1 cut(s) 933
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 5 cut(s) 165, 178, 239, 306, 1202
BssT1I CCWWGG 3 cut(s) 165, 239, 1202
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 2 cut(s) 352, 400
Bst6I CTCTTC 3 cut(s) 584, 661, 1051
BstDEI CTNAG 3 cut(s) 129, 693, 900
BstDSI CCRYGG 2 cut(s) 165, 1202
BstF5I GGATG 1 cut(s) 862
BstHHI GCGC 1 cut(s) 976
BstMAI GTCTC 3 cut(s) 218, 374, 596
BstMWI GCNNNNNNNGC 6 cut(s) 228, 345, 354, 722, 982, 1072
BstNI CCWGG 1 cut(s) 180
BstSCI CCNGG 3 cut(s) 178, 305, 306
BstSFI CTRYAG 1 cut(s) 821
BstV1I GCAGC 6 cut(s) 475, 807, 835, 1078, 1081, 1084
BstV2I GAAGAC 2 cut(s) 57, 113
BstX2I RGATCY 3 cut(s) 529, 688, 828
BstYI RGATCY 3 cut(s) 529, 688, 828
Bsu15I ATCGAT 1 cut(s) 922
Bsu36I CCTNAGG 1 cut(s) 693
BsuI GTATCC 1 cut(s) 940
BsuRI GGCC 3 cut(s) 170, 311, 1107
BsuTUI ATCGAT 1 cut(s) 922
BtgI CCRYGG 2 cut(s) 165, 1202
BtsCI GGATG 1 cut(s) 862
BtsI GCAGTG 1 cut(s) 718
BtsIMutI CAGTG 3 cut(s) 415, 718, 940
CciI TCATGA 5 cut(s) 39, 72, 763, 1060, 1177
CfoI GCGC 1 cut(s) 976
Cfr10I RCCGGY 1 cut(s) 389
Cfr13I GGNCC 2 cut(s) 309, 1018
Cfr9I CCCGGG 1 cut(s) 306
ClaI ATCGAT 1 cut(s) 922
Csp6I GTAC 1 cut(s) 508
CviAII CATG 7 cut(s) 40, 73, 166, 764, 1061, 1178, 1203
CviQI GTAC 1 cut(s) 508
DdeI CTNAG 3 cut(s) 129, 693, 900
EaeI YGGCCR 1 cut(s) 1105
Eam1104I CTCTTC 3 cut(s) 584, 661, 1051
EarI CTCTTC 3 cut(s) 584, 661, 1051
Ecl136II GAGCTC 1 cut(s) 1196
Eco130I CCWWGG 3 cut(s) 165, 239, 1202
Eco24I GRGCYC 2 cut(s) 326, 1198
Eco47I GGWCC 1 cut(s) 1018
Eco53kI GAGCTC 1 cut(s) 1196
Eco57I CTGAAG 1 cut(s) 144
Eco81I CCTNAGG 1 cut(s) 693
Eco88I CYCGRG 1 cut(s) 306
EcoICRI GAGCTC 1 cut(s) 1196
EcoRII CCWGG 1 cut(s) 178
EcoT14I CCWWGG 3 cut(s) 165, 239, 1202
EcoT38I GRGCYC 2 cut(s) 326, 1198
ErhI CCWWGG 3 cut(s) 165, 239, 1202
Esp3I CGTCTC 1 cut(s) 374
FaeI CATG 7 cut(s) 43, 76, 169, 767, 1064, 1181, 1206
FatI CATG 7 cut(s) 39, 72, 165, 763, 1060, 1177, 1202
FbaI TGATCA 2 cut(s) 772, 1219
Fnu4HI GCNGC 7 cut(s) 489, 821, 824, 977, 1067, 1070, 1073
FokI GGATG 1 cut(s) 869
FriOI GRGCYC 2 cut(s) 326, 1198
Fsp4HI GCNGC 7 cut(s) 489, 821, 824, 977, 1067, 1070, 1073
FspBI CTAG 4 cut(s) 47, 533, 678, 1130
GlaI GCGC 1 cut(s) 975
GluI GCNGC 7 cut(s) 489, 821, 824, 977, 1067, 1070, 1073
GsaI CCCAGC 1 cut(s) 1193
HaeIII GGCC 3 cut(s) 170, 311, 1107
HapII CCGG 4 cut(s) 307, 390, 527, 794
HhaI GCGC 1 cut(s) 976
Hin1II CATG 7 cut(s) 43, 76, 169, 767, 1064, 1181, 1206
Hin6I GCGC 1 cut(s) 974
HinP1I GCGC 1 cut(s) 974
HinfI GANTC 6 cut(s) 76, 546, 862, 956, 1167, 1174
HpaII CCGG 4 cut(s) 307, 390, 527, 794
HphI GGTGA 3 cut(s) 107, 115, 1094
Hpy166II GTNNAC 1 cut(s) 510
Hpy188I TCNGA 8 cut(s) 195, 361, 598, 618, 961, 1095, 1153, 1237
Hpy8I GTNNAC 1 cut(s) 510
HpyAV CCTTC 2 cut(s) 208, 701
HpyCH4III ACNGT 2 cut(s) 352, 400
HpyCH4IV ACGT 4 cut(s) 110, 371, 473, 1111
HpyCH4V TGCA 2 cut(s) 481, 823
HpyF10VI GCNNNNNNNGC 6 cut(s) 228, 345, 354, 722, 982, 1072
HpyF3I CTNAG 3 cut(s) 129, 693, 900
HpySE526I ACGT 4 cut(s) 110, 371, 473, 1111
Hsp92II CATG 7 cut(s) 43, 76, 169, 767, 1064, 1181, 1206
HspAI GCGC 1 cut(s) 974
Kpn2I TCCGGA 1 cut(s) 793
Ksp22I TGATCA 2 cut(s) 772, 1219
LmnI GCTCC 3 cut(s) 375, 697, 1193
Lsp1109I GCAGC 6 cut(s) 475, 807, 835, 1078, 1081, 1084
LweI GCATC 2 cut(s) 490, 886
MaeI CTAG 4 cut(s) 47, 533, 678, 1130
MaeII ACGT 4 cut(s) 110, 371, 473, 1111
MaeIII GTNAC 1 cut(s) 1112
MfeI CAATTG 1 cut(s) 986
MflI RGATCY 3 cut(s) 529, 688, 828
MhlI GDGCHC 2 cut(s) 326, 1198
MlsI TGGCCA 1 cut(s) 1107
MluCI AATT 8 cut(s) 27, 68, 207, 266, 744, 802, 986, 1157
MluNI TGGCCA 1 cut(s) 1107
MlyI GAGTC 5 cut(s) 70, 540, 950, 1161, 1168
Mox20I TGGCCA 1 cut(s) 1107
MroI TCCGGA 1 cut(s) 793
MscI TGGCCA 1 cut(s) 1107
MseI TTAA 1 cut(s) 1161
MslI CAYNNNNRTG 2 cut(s) 768, 1059
Msp20I TGGCCA 1 cut(s) 1107
MspA1I CMGCKG 1 cut(s) 1189
MspI CCGG 4 cut(s) 307, 390, 527, 794
MspR9I CCNGG 3 cut(s) 180, 307, 308
MunI CAATTG 1 cut(s) 986
MvaI CCWGG 1 cut(s) 180
MwoI GCNNNNNNNGC 6 cut(s) 228, 345, 354, 722, 982, 1072
NciI CCSGG 2 cut(s) 307, 308
NcoI CCATGG 2 cut(s) 165, 1202
NlaIII CATG 7 cut(s) 43, 76, 169, 767, 1064, 1181, 1206
NlaIV GGNNCC 3 cut(s) 690, 792, 993
NmuCI GTSAC 1 cut(s) 1112
PagI TCATGA 5 cut(s) 39, 72, 763, 1060, 1177
PcsI WCGNNNNNNNCGW 1 cut(s) 1086
PfeI GAWTC 1 cut(s) 862
PkrI GCNGC 7 cut(s) 490, 822, 825, 978, 1068, 1071, 1074
PleI GAGTC 5 cut(s) 70, 540, 950, 1161, 1168
PpsI GAGTC 5 cut(s) 70, 540, 950, 1161, 1168
Psp124BI GAGCTC 1 cut(s) 1198
Psp1406I AACGTT 1 cut(s) 473
Psp6I CCWGG 1 cut(s) 178
PspFI CCCAGC 1 cut(s) 1189
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 3 cut(s) 690, 792, 993
PspPI GGNCC 2 cut(s) 309, 1018
PstI CTGCAG 1 cut(s) 825
PsuI RGATCY 3 cut(s) 529, 688, 828
PvuII CAGCTG 1 cut(s) 1189
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
RseI CAYNNNNRTG 2 cut(s) 768, 1059
SacI GAGCTC 1 cut(s) 1198
SaqAI TTAA 1 cut(s) 1161
SatI GCNGC 7 cut(s) 489, 821, 824, 977, 1067, 1070, 1073
Sau96I GGNCC 2 cut(s) 309, 1018
SchI GAGTC 5 cut(s) 70, 540, 950, 1161, 1168
ScrFI CCNGG 3 cut(s) 180, 307, 308
SduI GDGCHC 2 cut(s) 326, 1198
SfaNI GCATC 2 cut(s) 490, 886
SfcI CTRYAG 1 cut(s) 821
SinI GGWCC 1 cut(s) 1018
SmaI CCCGGG 1 cut(s) 308
SmiMI CAYNNNNRTG 2 cut(s) 768, 1059
SpeI ACTAGT 1 cut(s) 677
Sse9I AATT 8 cut(s) 27, 68, 207, 266, 744, 802, 986, 1157
SsiI CCGC 1 cut(s) 977
SspI AATATT 1 cut(s) 1123
SspMI CTAG 4 cut(s) 47, 533, 678, 1130
SstI GAGCTC 1 cut(s) 1198
StyD4I CCNGG 3 cut(s) 178, 305, 306
StyI CCWWGG 3 cut(s) 165, 239, 1202
TaaI ACNGT 2 cut(s) 352, 400
TaiI ACGT 4 cut(s) 113, 374, 476, 1114
TaqI TCGA 1 cut(s) 922
TasI AATT 8 cut(s) 27, 68, 207, 266, 744, 802, 986, 1157
TatI WGTACW 1 cut(s) 507
TauI GCSGC 1 cut(s) 979
TfiI GAWTC 1 cut(s) 862
Tru1I TTAA 1 cut(s) 1161
Tru9I TTAA 1 cut(s) 1161
TscAI CASTG 3 cut(s) 415, 718, 940
TseFI GTSAC 1 cut(s) 1112
TseI GCWGC 6 cut(s) 488, 820, 823, 1066, 1069, 1072
Tsp45I GTSAC 1 cut(s) 1112
TspDTI ATGAA 6 cut(s) 28, 61, 468, 780, 1170, 1194
TspGWI ACGGA 1 cut(s) 398
TspMI CCCGGG 1 cut(s) 306
TspRI CASTG 3 cut(s) 415, 718, 940
VpaK11BI GGWCC 1 cut(s) 1018
XapI RAATTY 2 cut(s) 207, 1157
XmaI CCCGGG 1 cut(s) 306
XspI CTAG 4 cut(s) 47, 533, 678, 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.