Rmu_sc0002988.1_g000003
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002988.1
OG0000636
Physical Location & Seq
Forward (+)
13628 .. 14584
957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002988.1_g000003.1.cds

Sequence Viewer

Length: 957 bp
atgagcctggaagagcttgatgtgggggttgtgaaaacattccaccccactgattctgatttagtgggattctatctctacaacagaatcaaatccccaaccccaattggaggaaaacaaacattccctgagattgaaatatatggcaccacaggtttagccccgtgggatatatggagaatttacgaggcttccaaatttccacatcaagattatatctatttcttctcctcggttaagaagctgggttcccgctgttttcgcagaattggctgcgatgggggcacctggagcgagactgaatctgctaaacttgtccatgtcaatggaattgaagagccttatgggaagctaaggaaatttagatacaaaaacaacagagacagaggctgtgaacaccatgctgcttggttgatggatgaattcaccatcaaccaagcacccgatttggctttgtgccggctcaaactcaatgaaaaaggaggagcaagaaaaaagaggaagaagagttctgatgagactaatgaggatgagaatcacggaaagataatgtctttcaaaaaccgaaaacttgaaccgaaaagagttcaagttcaaaacaacatgtgtgagcaacaaaagggaagtgcctcatttagtactactagcactacacagcaactgcccccacaatgtgatgatcatgattactgtgtggatgagaacctagtgttctctccaactggcttggttgatgattatcatgacattttgaatagtgatcagtttatggcttctcttgatcaatggtatgaggaacaactacaacagtcttcggattcttcactactagtgccgcaacaacaagtagaacctaacatcagttgtaaggaacaacaacagcagcaagatgagcagaaattgccgccttctcccctcttgttcaccagcagcagctctgtggtggtcttgatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

318

Amino Acids

36.43

Weight (kDa)

5.57

Isoelectric Point (pI)

53.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 146, 284
AciI CCGC 3 cut(s) 253, 836, 905
AcsI RAATTY 4 cut(s) 180, 197, 359, 422
AdeI CACNNNGTG 1 cut(s) 674
AfaI GTAC 1 cut(s) 640
AfiI CCNNNNNNNGG 1 cut(s) 110
AflIII ACRYGT 1 cut(s) 603
AgsI TTSAA 7 cut(s) 137, 335, 559, 575, 590, 596, 754
AhlI ACTAGT 1 cut(s) 829
AjnI CCWGG 2 cut(s) 6, 287
AloI GAACNNNNNNTCC 2 cut(s) 493, 525
AluBI AGCT 4 cut(s) 16, 244, 352, 936
AluI AGCT 4 cut(s) 16, 244, 352, 936
Alw26I GTCTC 3 cut(s) 290, 375, 512
AlwNI CAGNNNCTG 2 cut(s) 390, 661
ApeKI GCWGC 5 cut(s) 273, 404, 883, 930, 933
ApoI RAATTY 4 cut(s) 180, 197, 359, 422
Asp700I GAANNNNTTC 1 cut(s) 38
AsuHPI GGTGA 2 cut(s) 418, 916
BaeGI GKGCMC 1 cut(s) 287
BanI GGYRCC 2 cut(s) 146, 284
BbsI GAAGAC 1 cut(s) 804
BbvI GCAGC 5 cut(s) 260, 391, 895, 942, 945
BccI CCATC 3 cut(s) 272, 409, 437
BciT130I CCWGG 2 cut(s) 8, 289
BclI TGATCA 3 cut(s) 679, 760, 781
BcoDI GTCTC 3 cut(s) 290, 375, 512
BcuI ACTAGT 1 cut(s) 829
BfaI CTAG 3 cut(s) 645, 707, 830
BisI GCNGC 7 cut(s) 274, 405, 836, 884, 905, 931, 934
BlsI GCNGC 7 cut(s) 275, 406, 837, 885, 906, 932, 935
BmcAI AGTACT 1 cut(s) 640
Bme1390I CCNGG 2 cut(s) 8, 289
BmiI GGNNCC 3 cut(s) 148, 250, 286
BmrFI CCNGG 2 cut(s) 8, 289
BpiI GAAGAC 1 cut(s) 804
BpmI CTGGAG 1 cut(s) 310
Bpu10I CCTNAGC 1 cut(s) 353
BsaBI GATNNNNATC 2 cut(s) 534, 738
BsaJI CCNNGG 2 cut(s) 164, 231
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse118I RCCGGY 1 cut(s) 459
Bse1I ACTGG 1 cut(s) 727
Bse8I GATNNNNATC 2 cut(s) 534, 738
BseBI CCWGG 2 cut(s) 8, 289
BseDI CCNNGG 2 cut(s) 164, 231
BseGI GGATG 3 cut(s) 424, 535, 703
BseJI GATNNNNATC 2 cut(s) 534, 738
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 727
BseRI GAGGAG 2 cut(s) 220, 498
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 5 cut(s) 260, 391, 895, 942, 945
BseYI CCCAGC 1 cut(s) 244
BshNI GGYRCC 2 cut(s) 146, 284
BsiSI CCGG 1 cut(s) 460
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 3 cut(s) 290, 375, 512
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 4 cut(s) 679, 760, 781, 951
BspACI CCGC 3 cut(s) 253, 836, 905
BspCNI CTCAG 1 cut(s) 121
BspHI TCATGA 2 cut(s) 682, 742
BspLI GGNNCC 3 cut(s) 148, 250, 286
BspQI GCTCTTC 2 cut(s) 6, 330
BspT107I GGYRCC 2 cut(s) 146, 284
BsrFI RCCGGY 1 cut(s) 459
BsrI ACTGG 1 cut(s) 727
BssAI RCCGGY 1 cut(s) 459
BssECI CCNNGG 2 cut(s) 164, 231
BssMI GATC 4 cut(s) 679, 760, 781, 951
Bst2UI CCWGG 2 cut(s) 8, 289
Bst4CI ACNGT 2 cut(s) 692, 810
Bst6I CTCTTC 3 cut(s) 6, 330, 500
BstAPI GCANNNNNTGC 1 cut(s) 901
BstC8I GCNNGC 1 cut(s) 461
BstDEI CTNAG 2 cut(s) 129, 353
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 3 cut(s) 424, 535, 703
BstKTI GATC 4 cut(s) 682, 763, 784, 954
BstMAI GTCTC 3 cut(s) 290, 375, 512
BstMBI GATC 4 cut(s) 679, 760, 781, 951
BstMWI GCNNNNNNNGC 6 cut(s) 261, 270, 282, 291, 892, 901
BstNI CCWGG 2 cut(s) 8, 289
BstNSI RCATGY 1 cut(s) 607
BstSCI CCNGG 2 cut(s) 6, 287
BstSLI GKGCMC 1 cut(s) 287
BstV1I GCAGC 5 cut(s) 260, 391, 895, 942, 945
BstV2I GAAGAC 1 cut(s) 804
BstXI CCANNNNNNTGG 1 cut(s) 326
BtgI CCRYGG 1 cut(s) 164
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 3 cut(s) 424, 535, 703
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 461
CaiI CAGNNNCTG 2 cut(s) 390, 661
CciI TCATGA 2 cut(s) 682, 742
Cfr10I RCCGGY 1 cut(s) 459
Csp6I GTAC 1 cut(s) 639
CviAII CATG 5 cut(s) 320, 401, 604, 683, 743
CviQI GTAC 1 cut(s) 639
DdeI CTNAG 2 cut(s) 129, 353
DpnI GATC 4 cut(s) 681, 762, 783, 953
DpnII GATC 4 cut(s) 679, 760, 781, 951
DraIII CACNNNGTG 1 cut(s) 674
Eam1104I CTCTTC 3 cut(s) 6, 330, 500
EarI CTCTTC 3 cut(s) 6, 330, 500
EcoRI GAATTC 1 cut(s) 422
EcoRII CCWGG 2 cut(s) 6, 287
FaeI CATG 5 cut(s) 323, 404, 607, 686, 746
FatI CATG 5 cut(s) 319, 400, 603, 682, 742
FauI CCCGC 1 cut(s) 260
FbaI TGATCA 3 cut(s) 679, 760, 781
Fnu4HI GCNGC 7 cut(s) 274, 405, 836, 884, 905, 931, 934
FokI GGATG 3 cut(s) 431, 542, 710
Fsp4HI GCNGC 7 cut(s) 274, 405, 836, 884, 905, 931, 934
FspBI CTAG 3 cut(s) 645, 707, 830
GluI GCNGC 7 cut(s) 274, 405, 836, 884, 905, 931, 934
GsaI CCCAGC 1 cut(s) 248
GsuI CTGGAG 1 cut(s) 310
HapII CCGG 1 cut(s) 460
Hin1II CATG 5 cut(s) 323, 404, 607, 686, 746
HinfI GANTC 6 cut(s) 53, 69, 87, 302, 535, 818
HpaII CCGG 1 cut(s) 460
HphI GGTGA 2 cut(s) 418, 916
Hpy166II GTNNAC 2 cut(s) 395, 924
Hpy188I TCNGA 4 cut(s) 58, 514, 817, 956
Hpy188III TCNNGA 5 cut(s) 209, 683, 743, 779, 949
Hpy8I GTNNAC 2 cut(s) 395, 924
HpyAV CCTTC 1 cut(s) 918
HpyCH4III ACNGT 2 cut(s) 692, 810
HpyF10VI GCNNNNNNNGC 6 cut(s) 261, 270, 282, 291, 892, 901
HpyF3I CTNAG 2 cut(s) 129, 353
Hsp92II CATG 5 cut(s) 323, 404, 607, 686, 746
KroI GCCGGC 1 cut(s) 459
KroNI GCCGGC 1 cut(s) 461
Ksp22I TGATCA 3 cut(s) 679, 760, 781
Kzo9I GATC 4 cut(s) 679, 760, 781, 951
LguI GCTCTTC 2 cut(s) 6, 330
LmnI GCTCC 2 cut(s) 291, 485
LpnPI CCDG 9 cut(s) 20, 138, 141, 230, 274, 301, 473, 708, 940
Lsp1109I GCAGC 5 cut(s) 260, 391, 895, 942, 945
MaeI CTAG 3 cut(s) 645, 707, 830
MalI GATC 4 cut(s) 681, 762, 783, 953
MboI GATC 4 cut(s) 679, 760, 781, 951
MboII GAAGA 7 cut(s) 23, 217, 347, 514, 517, 804, 813
MfeI CAATTG 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 8 cut(s) 105, 180, 197, 267, 330, 359, 422, 899
MmeI TCCRAC 1 cut(s) 743
MroNI GCCGGC 1 cut(s) 459
MroXI GAANNNNTTC 1 cut(s) 38
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 324
MspA1I CMGCKG 1 cut(s) 255
MspI CCGG 1 cut(s) 460
MspR9I CCNGG 2 cut(s) 8, 289
MunI CAATTG 1 cut(s) 105
MvaI CCWGG 2 cut(s) 8, 289
MwoI GCNNNNNNNGC 6 cut(s) 261, 270, 282, 291, 892, 901
NaeI GCCGGC 1 cut(s) 461
NdeII GATC 4 cut(s) 679, 760, 781, 951
NgoMIV GCCGGC 1 cut(s) 459
NlaIII CATG 5 cut(s) 323, 404, 607, 686, 746
NlaIV GGNNCC 3 cut(s) 148, 250, 286
NspI RCATGY 1 cut(s) 607
PagI TCATGA 2 cut(s) 682, 742
PciI ACATGT 1 cut(s) 603
PciSI GCTCTTC 2 cut(s) 6, 330
PdiI GCCGGC 1 cut(s) 461
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 6 cut(s) 53, 69, 87, 302, 535, 818
PkrI GCNGC 7 cut(s) 275, 406, 837, 885, 906, 932, 935
PscI ACATGT 1 cut(s) 603
Psp6I CCWGG 2 cut(s) 6, 287
PspFI CCCAGC 1 cut(s) 244
PspGI CCWGG 2 cut(s) 6, 287
PspN4I GGNNCC 3 cut(s) 148, 250, 286
PstNI CAGNNNCTG 2 cut(s) 390, 661
RsaI GTAC 1 cut(s) 640
RsaNI GTAC 1 cut(s) 639
RseI CAYNNNNRTG 1 cut(s) 324
SapI GCTCTTC 2 cut(s) 6, 330
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 7 cut(s) 274, 405, 836, 884, 905, 931, 934
Sau3AI GATC 4 cut(s) 679, 760, 781, 951
ScaI AGTACT 1 cut(s) 640
ScrFI CCNGG 2 cut(s) 8, 289
SduI GDGCHC 1 cut(s) 287
SetI ASST 8 cut(s) 18, 157, 246, 290, 354, 708, 856, 938
SmiMI CAYNNNNRTG 1 cut(s) 324
SpeI ACTAGT 1 cut(s) 829
Sse9I AATT 8 cut(s) 105, 180, 197, 267, 330, 359, 422, 899
SsiI CCGC 3 cut(s) 253, 836, 905
SspMI CTAG 3 cut(s) 645, 707, 830
StyD4I CCNGG 2 cut(s) 6, 287
TaaI ACNGT 2 cut(s) 692, 810
TasI AATT 8 cut(s) 105, 180, 197, 267, 330, 359, 422, 899
TatI WGTACW 1 cut(s) 638
TauI GCSGC 2 cut(s) 838, 907
TfiI GAWTC 6 cut(s) 53, 69, 87, 302, 535, 818
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 1 cut(s) 55
TseI GCWGC 5 cut(s) 273, 404, 883, 930, 933
TspDTI ATGAA 2 cut(s) 435, 489
TspGWI ACGGA 1 cut(s) 555
TspRI CASTG 1 cut(s) 55
XapI RAATTY 4 cut(s) 180, 197, 359, 422
XceI RCATGY 1 cut(s) 607
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 3 cut(s) 645, 707, 830
ZrmI AGTACT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.