Rroxscaffold_3G00220090
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000636
Physical Location & Seq
Reverse (-)
2307948 .. 2309143
1196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00220090.1

Sequence Viewer

Length: 1137 bp
ATGGCTCTCTTAGATCAATTCATGACTCTGGATCAACTTGATGTGGGTGTGGTGAAGACGTTTCACCCTACTGAAGCTGAGTTGGTGGGTTTCTTTCTATTCAACAAGATTTCCATGGCCTCAAACCCAGGCAATCATATTCAGACCTTCCCTGAAATTTGTATATACGGCGAGACAGGCTTACCACCGTGGGAGATATGGAGGGTATATCAGCAATTCAAGTTTCCCCACCAAGATTTTCTCTACTTCTTCTCCTGGGCCAAGAAAGTGAGCCCCAACAAATCTCGCAACTCTCGCACGGTTGGCTCTGATGGAGGAACGTGGAGCGAGACGGAAGCCGGTAGGCCTGTGTATATCAGTGGAAGTGAAGAGGCGTTTGGGAAAGTCAGGAGGTTTCGGTATGAAAAGAACAAGGACAAAACGTTTGTGCATCACGCTGCTTGGTTGATGGAGGAGAGGAGGAAGAAAAAGAGGAAGAAGAGTTCTGATGAGACTAACGAGGATCAGAATGTGAGAAGCAAAAAGTGTTTGAAAAACCGAAAAGTTGAACCGAGAAGAGATCAAACTAGTTTCTTGGATCCTAAGGAGCAACAAGAAGGCAGTGCTTCCTTTGCTACTACTACTTCACAGCTAATTCTCTCTCCCTACCATCATGAAGATGATCAAGCGGTTCAGGTGGTTCCGGAGAACAATTACGATTATGACGAGCTGCAGCAGATCCTCTTTAGTGATGATGATTGTATGGATGAGAATCTAATGTTCTCTCCCACTATCTTGTTTGATGATGCTCAGCTTATGGCTTATGTTGATCGATCAATATCCAGTGAGCAACAACAACAACAAGATTCGGATTATTCACTTGCGCCGCAACAGCAATTGGAACCTGACAATAGGTGTCAAGAGGAGGACCAAATACAACAAGAAGATCAGCCCTCTTCCTCTCATTCTCATGAGCGGCAGCAGCTCATCGGTGATGACGATCTGATGATTTCTGGCCAACGTGACTATAATATTCCACTCGATAACGACTTCTTTTGGTCAGATGAATTTAATGGACTCTTGACTCATGAAGATCAGCTGGGAGCTCTGCCATGGTGGGAAACTGATGATCAGTTTCAGTATTCTGACATCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

378

Amino Acids

44.19

Weight (kDa)

4.64

Isoelectric Point (pI)

55.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 20 - 152 2.2e-15 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 955
AccIII TCCGGA 1 cut(s) 682
AciI CCGC 3 cut(s) 668, 866, 955
AclI AACGTT 1 cut(s) 422
AclWI GGATC 5 cut(s) 39, 510, 572, 585, 712
AcoI YGGCCR 1 cut(s) 994
AcsI RAATTY 2 cut(s) 156, 1046
AcuI CTGAAG 1 cut(s) 93
AgsI TTSAA 4 cut(s) 103, 220, 532, 548
AhlI ACTAGT 1 cut(s) 566
AjnI CCWGG 2 cut(s) 127, 254
AjuI GAANNNNNNNTTGG 2 cut(s) 360, 392
AloI GAACNNNNNNTCC 2 cut(s) 466, 498
AluBI AGCT 7 cut(s) 77, 631, 709, 793, 964, 1078, 1085
AluI AGCT 7 cut(s) 77, 631, 709, 793, 964, 1078, 1085
Alw21I GWGCWC 1 cut(s) 1087
Alw26I GTCTC 3 cut(s) 167, 323, 485
AlwI GGATC 5 cut(s) 39, 510, 572, 585, 712
Aor13HI TCCGGA 1 cut(s) 682
AoxI GGCC 4 cut(s) 117, 258, 344, 994
ApeKI GCWGC 5 cut(s) 437, 709, 712, 958, 961
ApoI RAATTY 2 cut(s) 156, 1046
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
AspLEI GCGC 1 cut(s) 865
AspS9I GGNCC 2 cut(s) 258, 907
AsuHPI GGTGA 3 cut(s) 56, 64, 983
AvaII GGWCC 1 cut(s) 907
AxyI CCTNAGG 1 cut(s) 582
BalI TGGCCA 1 cut(s) 996
BamHI GGATCC 1 cut(s) 577
BanII GRGCYC 2 cut(s) 275, 1087
BbsI GAAGAC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 1087
BbvI GCAGC 5 cut(s) 424, 696, 724, 970, 973
BccI CCATC 3 cut(s) 305, 442, 657
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 2 cut(s) 129, 256
BclI TGATCA 2 cut(s) 661, 1108
BcoDI GTCTC 3 cut(s) 167, 323, 485
BcuI ACTAGT 1 cut(s) 566
BfaI CTAG 1 cut(s) 567
BfmI CTRYAG 1 cut(s) 710
BisI GCNGC 7 cut(s) 438, 710, 713, 866, 956, 959, 962
BlpI GCTNAGC 1 cut(s) 789
BlsI GCNGC 7 cut(s) 439, 711, 714, 867, 957, 960, 963
Bme1390I CCNGG 2 cut(s) 129, 256
Bme18I GGWCC 1 cut(s) 907
BmgT120I GGNCC 2 cut(s) 258, 907
BmiI GGNNCC 3 cut(s) 579, 681, 882
BmrFI CCNGG 2 cut(s) 129, 256
BmsI GCATC 2 cut(s) 439, 775
BpiI GAAGAC 1 cut(s) 62
Bpu1102I GCTNAGC 1 cut(s) 789
Bsa29I ATCGAT 1 cut(s) 811
BsaBI GATNNNNATC 3 cut(s) 750, 817, 978
BsaJI CCNNGG 5 cut(s) 114, 127, 188, 255, 1091
BsaWI WCCGGW 1 cut(s) 682
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bse118I RCCGGY 1 cut(s) 338
Bse1I ACTGG 1 cut(s) 822
Bse21I CCTNAGG 1 cut(s) 582
Bse8I GATNNNNATC 3 cut(s) 750, 817, 978
BseAI TCCGGA 1 cut(s) 682
BseBI CCWGG 2 cut(s) 129, 256
BseCI ATCGAT 1 cut(s) 811
BseDI CCNNGG 5 cut(s) 114, 127, 188, 255, 1091
BseGI GGATG 1 cut(s) 751
BseJI GATNNNNATC 3 cut(s) 750, 817, 978
BseMII CTCAG 2 cut(s) 69, 803
BseNI ACTGG 1 cut(s) 822
BseRI GAGGAG 3 cut(s) 467, 472, 917
BseXI GCAGC 5 cut(s) 424, 696, 724, 970, 973
BseYI CCCAGC 1 cut(s) 1078
BshFI GGCC 4 cut(s) 119, 260, 346, 996
BshVI ATCGAT 1 cut(s) 811
BsiHKAI GWGCWC 1 cut(s) 1087
BsiSI CCGG 2 cut(s) 339, 683
BsmAI GTCTC 3 cut(s) 167, 323, 485
BsmBI CGTCTC 1 cut(s) 323
BsnI GGCC 4 cut(s) 119, 260, 346, 996
Bsp1286I GDGCHC 2 cut(s) 275, 1087
Bsp13I TCCGGA 1 cut(s) 682
Bsp1720I GCTNAGC 1 cut(s) 789
Bsp19I CCATGG 2 cut(s) 114, 1091
BspACI CCGC 3 cut(s) 668, 866, 955
BspANI GGCC 4 cut(s) 119, 260, 346, 996
BspCNI CTCAG 2 cut(s) 70, 802
BspDI ATCGAT 1 cut(s) 811
BspEI TCCGGA 1 cut(s) 682
BspHI TCATGA 4 cut(s) 21, 652, 949, 1066
BspLI GGNNCC 3 cut(s) 579, 681, 882
BspMAI CTGCAG 1 cut(s) 714
BspPI GGATC 5 cut(s) 39, 510, 572, 585, 712
BsrBI CCGCTC 1 cut(s) 955
BsrFI RCCGGY 1 cut(s) 338
BsrI ACTGG 1 cut(s) 822
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 5 cut(s) 114, 127, 188, 255, 1091
BssT1I CCWWGG 2 cut(s) 114, 1091
Bst2UI CCWGG 2 cut(s) 129, 256
Bst4CI ACNGT 2 cut(s) 189, 301
Bst6I CTCTTC 4 cut(s) 363, 473, 550, 940
BstDEI CTNAG 4 cut(s) 10, 78, 582, 789
BstDSI CCRYGG 3 cut(s) 114, 188, 1091
BstF5I GGATG 1 cut(s) 751
BstHHI GCGC 1 cut(s) 865
BstMAI GTCTC 3 cut(s) 167, 323, 485
BstMWI GCNNNNNNNGC 6 cut(s) 177, 294, 303, 611, 871, 961
BstNI CCWGG 2 cut(s) 129, 256
BstSCI CCNGG 2 cut(s) 127, 254
BstSFI CTRYAG 1 cut(s) 710
BstV1I GCAGC 5 cut(s) 424, 696, 724, 970, 973
BstV2I GAAGAC 1 cut(s) 62
BstX2I RGATCY 2 cut(s) 577, 717
BstYI RGATCY 2 cut(s) 577, 717
Bsu15I ATCGAT 1 cut(s) 811
Bsu36I CCTNAGG 1 cut(s) 582
BsuRI GGCC 4 cut(s) 119, 260, 346, 996
BsuTUI ATCGAT 1 cut(s) 811
BtgI CCRYGG 3 cut(s) 114, 188, 1091
BtsCI GGATG 1 cut(s) 751
BtsI GCAGTG 1 cut(s) 607
BtsIMutI CAGTG 3 cut(s) 364, 607, 829
CciI TCATGA 4 cut(s) 21, 652, 949, 1066
CfoI GCGC 1 cut(s) 865
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 2 cut(s) 258, 907
ClaI ATCGAT 1 cut(s) 811
CviAII CATG 6 cut(s) 22, 115, 653, 950, 1067, 1092
DdeI CTNAG 4 cut(s) 10, 78, 582, 789
EaeI YGGCCR 1 cut(s) 994
Eam1104I CTCTTC 4 cut(s) 363, 473, 550, 940
EarI CTCTTC 4 cut(s) 363, 473, 550, 940
Ecl136II GAGCTC 1 cut(s) 1085
Eco130I CCWWGG 2 cut(s) 114, 1091
Eco147I AGGCCT 1 cut(s) 346
Eco24I GRGCYC 2 cut(s) 275, 1087
Eco47I GGWCC 1 cut(s) 907
Eco53kI GAGCTC 1 cut(s) 1085
Eco57I CTGAAG 1 cut(s) 93
Eco81I CCTNAGG 1 cut(s) 582
EcoICRI GAGCTC 1 cut(s) 1085
EcoRII CCWGG 2 cut(s) 127, 254
EcoT14I CCWWGG 2 cut(s) 114, 1091
EcoT38I GRGCYC 2 cut(s) 275, 1087
ErhI CCWWGG 2 cut(s) 114, 1091
Esp3I CGTCTC 1 cut(s) 323
FaeI CATG 6 cut(s) 25, 118, 656, 953, 1070, 1095
FatI CATG 6 cut(s) 21, 114, 652, 949, 1066, 1091
FbaI TGATCA 2 cut(s) 661, 1108
Fnu4HI GCNGC 7 cut(s) 438, 710, 713, 866, 956, 959, 962
FokI GGATG 1 cut(s) 758
FriOI GRGCYC 2 cut(s) 275, 1087
Fsp4HI GCNGC 7 cut(s) 438, 710, 713, 866, 956, 959, 962
FspBI CTAG 1 cut(s) 567
GlaI GCGC 1 cut(s) 864
GluI GCNGC 7 cut(s) 438, 710, 713, 866, 956, 959, 962
GsaI CCCAGC 1 cut(s) 1082
HaeIII GGCC 4 cut(s) 119, 260, 346, 996
HapII CCGG 2 cut(s) 339, 683
HhaI GCGC 1 cut(s) 865
Hin1II CATG 6 cut(s) 25, 118, 656, 953, 1070, 1095
Hin6I GCGC 1 cut(s) 863
HinP1I GCGC 1 cut(s) 863
HinfI GANTC 5 cut(s) 25, 751, 845, 1056, 1063
HpaII CCGG 2 cut(s) 339, 683
HphI GGTGA 3 cut(s) 56, 64, 983
Hpy188I TCNGA 8 cut(s) 144, 310, 487, 507, 850, 984, 1042, 1126
Hpy188III TCNNGA 9 cut(s) 22, 29, 388, 653, 683, 899, 950, 1060, 1067
HpyAV CCTTC 2 cut(s) 157, 590
HpyCH4III ACNGT 2 cut(s) 189, 301
HpyCH4IV ACGT 4 cut(s) 59, 320, 422, 1000
HpyCH4V TGCA 2 cut(s) 430, 712
HpyF10VI GCNNNNNNNGC 6 cut(s) 177, 294, 303, 611, 871, 961
HpyF3I CTNAG 4 cut(s) 10, 78, 582, 789
HpySE526I ACGT 4 cut(s) 59, 320, 422, 1000
Hsp92II CATG 6 cut(s) 25, 118, 656, 953, 1070, 1095
HspAI GCGC 1 cut(s) 863
Kpn2I TCCGGA 1 cut(s) 682
Ksp22I TGATCA 2 cut(s) 661, 1108
LmnI GCTCC 3 cut(s) 324, 586, 1082
Lsp1109I GCAGC 5 cut(s) 424, 696, 724, 970, 973
LweI GCATC 2 cut(s) 439, 775
MaeI CTAG 1 cut(s) 567
MaeII ACGT 4 cut(s) 59, 320, 422, 1000
MaeIII GTNAC 1 cut(s) 1001
MbiI CCGCTC 1 cut(s) 955
MfeI CAATTG 1 cut(s) 875
MflI RGATCY 2 cut(s) 577, 717
MhlI GDGCHC 2 cut(s) 275, 1087
MlsI TGGCCA 1 cut(s) 996
MluCI AATT 7 cut(s) 17, 156, 215, 633, 691, 875, 1046
MluNI TGGCCA 1 cut(s) 996
MlyI GAGTC 3 cut(s) 19, 1050, 1057
Mox20I TGGCCA 1 cut(s) 996
MroI TCCGGA 1 cut(s) 682
MscI TGGCCA 1 cut(s) 996
MseI TTAA 1 cut(s) 1050
MslI CAYNNNNRTG 2 cut(s) 657, 948
Msp20I TGGCCA 1 cut(s) 996
MspA1I CMGCKG 1 cut(s) 1078
MspI CCGG 2 cut(s) 339, 683
MspR9I CCNGG 2 cut(s) 129, 256
MunI CAATTG 1 cut(s) 875
MvaI CCWGG 2 cut(s) 129, 256
MwoI GCNNNNNNNGC 6 cut(s) 177, 294, 303, 611, 871, 961
NcoI CCATGG 2 cut(s) 114, 1091
NlaIII CATG 6 cut(s) 25, 118, 656, 953, 1070, 1095
NlaIV GGNNCC 3 cut(s) 579, 681, 882
NmuCI GTSAC 1 cut(s) 1001
PagI TCATGA 4 cut(s) 21, 652, 949, 1066
PceI AGGCCT 1 cut(s) 346
PcsI WCGNNNNNNNCGW 2 cut(s) 702, 975
PfeI GAWTC 2 cut(s) 751, 845
PkrI GCNGC 7 cut(s) 439, 711, 714, 867, 957, 960, 963
PleI GAGTC 3 cut(s) 19, 1050, 1057
PpsI GAGTC 3 cut(s) 19, 1050, 1057
Psp124BI GAGCTC 1 cut(s) 1087
Psp1406I AACGTT 1 cut(s) 422
Psp6I CCWGG 2 cut(s) 127, 254
PspFI CCCAGC 1 cut(s) 1078
PspGI CCWGG 2 cut(s) 127, 254
PspN4I GGNNCC 3 cut(s) 579, 681, 882
PspPI GGNCC 2 cut(s) 258, 907
PstI CTGCAG 1 cut(s) 714
PsuI RGATCY 2 cut(s) 577, 717
PvuII CAGCTG 1 cut(s) 1078
RseI CAYNNNNRTG 2 cut(s) 657, 948
SacI GAGCTC 1 cut(s) 1087
SaqAI TTAA 1 cut(s) 1050
SatI GCNGC 7 cut(s) 438, 710, 713, 866, 956, 959, 962
Sau96I GGNCC 2 cut(s) 258, 907
SchI GAGTC 3 cut(s) 19, 1050, 1057
ScrFI CCNGG 2 cut(s) 129, 256
SduI GDGCHC 2 cut(s) 275, 1087
SfaNI GCATC 2 cut(s) 439, 775
SfcI CTRYAG 1 cut(s) 710
SinI GGWCC 1 cut(s) 907
SmiMI CAYNNNNRTG 2 cut(s) 657, 948
SpeI ACTAGT 1 cut(s) 566
Sse9I AATT 7 cut(s) 17, 156, 215, 633, 691, 875, 1046
SseBI AGGCCT 1 cut(s) 346
SsiI CCGC 3 cut(s) 668, 866, 955
SspI AATATT 1 cut(s) 1012
SspMI CTAG 1 cut(s) 567
SstI GAGCTC 1 cut(s) 1087
StuI AGGCCT 1 cut(s) 346
StyD4I CCNGG 2 cut(s) 127, 254
StyI CCWWGG 2 cut(s) 114, 1091
TaaI ACNGT 2 cut(s) 189, 301
TaiI ACGT 4 cut(s) 62, 323, 425, 1003
TaqI TCGA 2 cut(s) 811, 1020
TasI AATT 7 cut(s) 17, 156, 215, 633, 691, 875, 1046
TauI GCSGC 2 cut(s) 868, 958
TfiI GAWTC 2 cut(s) 751, 845
Tru1I TTAA 1 cut(s) 1050
Tru9I TTAA 1 cut(s) 1050
TscAI CASTG 3 cut(s) 364, 607, 829
TseFI GTSAC 1 cut(s) 1001
TseI GCWGC 5 cut(s) 437, 709, 712, 958, 961
Tsp45I GTSAC 1 cut(s) 1001
TspDTI ATGAA 5 cut(s) 10, 417, 669, 1059, 1083
TspGWI ACGGA 1 cut(s) 347
TspRI CASTG 3 cut(s) 364, 607, 829
VpaK11BI GGWCC 1 cut(s) 907
XapI RAATTY 2 cut(s) 156, 1046
XspI CTAG 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.