RchiOBHm_Chr7g0239011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000636
Physical Location & Seq
Reverse (-)
64494775 .. 64495196
422 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21416

Sequence Viewer

Length: 369 bp
ATGGAGGAGTACACCATCAACCAAGCACCAGATCTGGCTTTGTGCCGACTCAAAGTCAATGATAAAGGAGGAGGAAGAAAAAAGAGGAAGAAGAGTTCTGATGAGACTAATGAGGATCAGAATGTGAGAAGCAAAAAGTGTTTGAAAAACCGAAAAGTTGAACCGAGAAGAGATCAAACTAGTTTCTTGGATCCTGAGGAGCAACAAGAAGGCAGTGCTTCCTTTGCTACTACTACTTCACAGCTAATTCTCTCTCCCTATCATCATGAAGATGATCAAGCGGTTCAGGTGGTTCCGGAGAACAATTACGATTATGACGAGCTGCAGCAGATCCTCTTTAGTGATGATGATTCTTATGGCTTCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

14.07

Weight (kDa)

4.83

Isoelectric Point (pI)

56.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 295
AciI CCGC 1 cut(s) 281
AclWI GGATC 4 cut(s) 123, 185, 198, 325
AfaI GTAC 1 cut(s) 11
AgsI TTSAA 2 cut(s) 145, 161
AhdI GACNNNNNGTC 1 cut(s) 53
AhlI ACTAGT 1 cut(s) 179
AloI GAACNNNNNNTCC 2 cut(s) 79, 111
AluBI AGCT 2 cut(s) 244, 322
AluI AGCT 2 cut(s) 244, 322
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 4 cut(s) 123, 185, 198, 325
Aor13HI TCCGGA 1 cut(s) 295
ApeKI GCWGC 2 cut(s) 322, 325
AxyI CCTNAGG 1 cut(s) 195
BamHI GGATCC 1 cut(s) 190
BbvI GCAGC 2 cut(s) 309, 337
BccI CCATC 1 cut(s) 23
BclI TGATCA 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 98
BcuI ACTAGT 1 cut(s) 179
BfaI CTAG 1 cut(s) 180
BfmI CTRYAG 1 cut(s) 323
BglII AGATCT 1 cut(s) 31
BisI GCNGC 2 cut(s) 323, 326
BlsI GCNGC 2 cut(s) 324, 327
BmeRI GACNNNNNGTC 1 cut(s) 53
BmiI GGNNCC 2 cut(s) 192, 294
BsaWI WCCGGW 1 cut(s) 295
Bse21I CCTNAGG 1 cut(s) 195
BseAI TCCGGA 1 cut(s) 295
BseMII CTCAG 1 cut(s) 186
BseRI GAGGAG 3 cut(s) 20, 84, 212
BseXI GCAGC 2 cut(s) 309, 337
BsiSI CCGG 1 cut(s) 296
BsmAI GTCTC 1 cut(s) 98
Bsp13I TCCGGA 1 cut(s) 295
Bsp143I GATC 6 cut(s) 31, 115, 172, 190, 274, 330
BspACI CCGC 1 cut(s) 281
BspCNI CTCAG 1 cut(s) 187
BspEI TCCGGA 1 cut(s) 295
BspHI TCATGA 1 cut(s) 265
BspLI GGNNCC 2 cut(s) 192, 294
BspMAI CTGCAG 1 cut(s) 327
BspPI GGATC 4 cut(s) 123, 185, 198, 325
BssMI GATC 6 cut(s) 31, 115, 172, 190, 274, 330
Bst6I CTCTTC 2 cut(s) 86, 163
BstDEI CTNAG 1 cut(s) 195
BstKTI GATC 6 cut(s) 34, 118, 175, 193, 277, 333
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 6 cut(s) 31, 115, 172, 190, 274, 330
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstSFI CTRYAG 1 cut(s) 323
BstV1I GCAGC 2 cut(s) 309, 337
BstX2I RGATCY 3 cut(s) 31, 190, 330
BstYI RGATCY 3 cut(s) 31, 190, 330
Bsu36I CCTNAGG 1 cut(s) 195
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 220
CciI TCATGA 1 cut(s) 265
Csp6I GTAC 1 cut(s) 10
CviAII CATG 1 cut(s) 266
CviJI RGCY 4 cut(s) 38, 244, 322, 360
CviKI_1 RGCY 4 cut(s) 38, 244, 322, 360
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 1 cut(s) 195
DpnI GATC 6 cut(s) 33, 117, 174, 192, 276, 332
DpnII GATC 6 cut(s) 31, 115, 172, 190, 274, 330
DriI GACNNNNNGTC 1 cut(s) 53
Eam1104I CTCTTC 2 cut(s) 86, 163
Eam1105I GACNNNNNGTC 1 cut(s) 53
EarI CTCTTC 2 cut(s) 86, 163
Eco81I CCTNAGG 1 cut(s) 195
FaeI CATG 1 cut(s) 269
FaiI YATR 3 cut(s) 267, 315, 357
FatI CATG 1 cut(s) 265
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 2 cut(s) 323, 326
Fsp4HI GCNGC 2 cut(s) 323, 326
FspBI CTAG 1 cut(s) 180
GluI GCNGC 2 cut(s) 323, 326
HapII CCGG 1 cut(s) 296
Hin1II CATG 1 cut(s) 269
HinfI GANTC 2 cut(s) 48, 350
HpaII CCGG 1 cut(s) 296
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 2 cut(s) 100, 120
Hpy188III TCNNGA 3 cut(s) 194, 266, 296
Hpy8I GTNNAC 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 203
HpyCH4V TGCA 1 cut(s) 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 1 cut(s) 195
Hsp92II CATG 1 cut(s) 269
Kpn2I TCCGGA 1 cut(s) 295
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 6 cut(s) 31, 115, 172, 190, 274, 330
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 5 cut(s) 20, 42, 207, 272, 309
Lsp1109I GCAGC 2 cut(s) 309, 337
MaeI CTAG 1 cut(s) 180
MalI GATC 6 cut(s) 33, 117, 174, 192, 276, 332
MboI GATC 6 cut(s) 31, 115, 172, 190, 274, 330
MboII GAAGA 5 cut(s) 87, 100, 103, 180, 281
MflI RGATCY 3 cut(s) 31, 190, 330
MluCI AATT 2 cut(s) 246, 304
MlyI GAGTC 1 cut(s) 42
MnlI CCTC 6 cut(s) 62, 65, 78, 106, 190, 344
MroI TCCGGA 1 cut(s) 295
MslI CAYNNNNRTG 1 cut(s) 270
MspI CCGG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 224
NdeII GATC 6 cut(s) 31, 115, 172, 190, 274, 330
NlaIII CATG 1 cut(s) 269
NlaIV GGNNCC 2 cut(s) 192, 294
PagI TCATGA 1 cut(s) 265
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PfeI GAWTC 1 cut(s) 350
PkrI GCNGC 2 cut(s) 324, 327
PleI GAGTC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 42
PspN4I GGNNCC 2 cut(s) 192, 294
PstI CTGCAG 1 cut(s) 327
PsuI RGATCY 3 cut(s) 31, 190, 330
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
RseI CAYNNNNRTG 1 cut(s) 270
SatI GCNGC 2 cut(s) 323, 326
Sau3AI GATC 6 cut(s) 31, 115, 172, 190, 274, 330
SchI GAGTC 1 cut(s) 42
SetI ASST 3 cut(s) 246, 291, 324
SfcI CTRYAG 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 270
SpeI ACTAGT 1 cut(s) 179
Sse9I AATT 2 cut(s) 246, 304
SsiI CCGC 1 cut(s) 281
SspMI CTAG 1 cut(s) 180
TasI AATT 2 cut(s) 246, 304
TatI WGTACW 1 cut(s) 9
TfiI GAWTC 1 cut(s) 350
TscAI CASTG 1 cut(s) 220
TseI GCWGC 2 cut(s) 322, 325
TspDTI ATGAA 1 cut(s) 282
TspRI CASTG 1 cut(s) 220
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.